BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27230.1
Length=3221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942381 jgi|Araly1|942381|scaffold_602925.1 3618 0.0
> Ahg942381 jgi|Araly1|942381|scaffold_602925.1
Length=3027
Score = 3618 bits (1959), Expect = 0.0
Identities = 2438/2667 (91%), Gaps = 41/2667 (2%)
Strand=Plus/Plus
Query 386 GAGAAGAAAGAGAAGGAGCTTTGTTTGATTGATGAGTCGATGAAAGCGAAACAGAGCGAG 445
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 373 GAGAAGAAGGAGAAGGAGCTTTGTTTGATTGACGAGTCGATGAGAGCGAAACAGAGCGAG 432
Query 446 TTTgagaagaaggagaaggattttgatttggaacagaaggcagaggttgagaagaggaaa 505
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 433 TTCGAGAAGAAGGAGAAGGAGTTTGATTTGGAACAGAAGGCAGAGTTTGAGAAGACGAAA 492
Query 506 agagaagTTGAACAGTTGGAGAAGTTTACGACGAGGATGGAATCGGTGGAGAGGGTTTCT 565
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 493 GGAGAAGTTGAACAATTGGAGAAGTTTACGACGAGGATGGAATCGGTGGAGAGGTTTTCT 552
Query 566 GATGAGAAGTTGATGGAACTTGGTTTGAGAGCAACAGAGCTTGAATTGAAGATGGAAGAA 625
|||||||||||||||||||||| | | ||||||| |||||||||| || | || |||||
Sbjct 553 GATGAGAAGTTGATGGAACTTGATGTCAGAGCAAAAGAGCTTGAAAAGATGGTGAAAGAA 612
Query 626 GTAGAGAAGCATAGAGAACGGATTGTCGCTGGAGATAAGTTGAGAGGTGAGTTTGAGCCA 685
||||||||||| |||||| |||||||||| |||| || |||||||| ||| |||||||||
Sbjct 613 GTAGAGAAGCAAAGAGAAGGGATTGTCGCCGGAGGTATGTTGAGAGATGAATTTGAGCCA 672
Query 686 TTGGTTTCGTTGTTGGCTAAGAACATGGGCTTAAGTGTGACAATGCCTGTAAAGTGTTCG 745
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 673 TTGGTTTCATTGTTGGCTAAGAACATGGGCTCAAGTGTGACAATGCCTGTAAAGTGTTC- 731
Query 746 A-CTTTATACCTGAACGAGAATGC---AGA-----T-GA-GA--TGGTTAAGAAAAACAC 792
| ||||||||||||| |||||||| ||| | || || ||||||||||||||||
Sbjct 732 AGCTTTATACCTGAAAGAGAATGCAAAAGATTTTGTAGATGATTTGGTTAAGAAAAACAC 791
Query 793 AGCCTTGGCGAGAATGGTTCCGTATTTGGATCCTGCAAAGGTGGTTTTGGATGCTATAGA 852
||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 792 AGCTTTGGCGAGAATGGTTCCGTATTTGGATCCGGCAAAGGTTATTTTGGATGCTGTAGA 851
Query 853 AGGGTCTTTTAAGGAATACTGGAAGAAAGATTTAGGAGAAGCTGATGATAGAGTAGTTAA 912
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 852 AGGGTCTTTTAAGGAATACTGGAATAAAGGTTTAGGAGAAGCTGATGATAGAGTAGTTAA 911
Query 913 TAGTTGGATTGTTCTGTTAGAGAATCTGATAAAGATGAATCTGAAAATCACACCGCAGGT 972
|||||| ||||||||||||||||||||| || ||||||||| || |||||||||| ||||
Sbjct 912 TAGTTGCATTGTTCTGTTAGAGAATCTGTTACAGATGAATCGGAGAATCACACCGGAGGT 971
Query 973 GAAACAGGAAGCGACTCCACTTGGGATTGCTTGGTTAGGCAAGGCTAAAGCCAATATGAA 1032
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 972 GAAACAGGAAGCGACTCAACTTGGGATTGATTGGTTAGGCAAGGAAAAAGCCAATCTGAA 1031
Query 1033 GAATGACCCCCCGCAGGTTTTTGGTTG-TGCGTTGTTTCTGGCTGCTTACGGTTTGGGC- 1090
||||| ||||| |||||| ||||| | |||||||||||||||||||||||| |||
Sbjct 1032 TAATGA---CCCGCGGGTTTTAGGTTGCT-TGTTGTTTCTGGCTGCTTACGGTTT-GGCT 1086
Query 1091 TCTCTGACTACTCA-TGGGGTGCTCTTAACCCTTGTAGAGCGGTTCCTTTTGTATGATCA 1149
||| |||||||| | || |||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1087 TCTGTGACTACT-AGTGAGGTGCTCTTAACCCTTTTAGAGCGCTTTCTTTTGTATGATCA 1145
Query 1150 TGCCCCAAAACTGTTTCGGCTTCTGGGGTTAGAAGAGAAGGTTTCTGGTGCGGTTGAAAC 1209
|||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 1146 TGCCCCGAAACTGTTTCGGCTTCTGGGGTTAGAAGATAAAGTTTTTGGTGCGGTTGAAAC 1205
Query 1210 GCTAAAGAAAAAGGAAGAGTATCTTGCAACACTGAAATTTATCTGTGAATTCCGGTTATA 1269
||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1206 GCTAAAGAAAAGGGATGAGTATCTCGCAACACTGAACTTTATCTGTGAATTCCGGTTATA 1265
Query 1270 CAAGCTTTGTCCAGGAGGAA--GACCAGGAGAACTTTTGATTGAATTCTTTGA-TTCCTC 1326
|||||||||||||||| || ||||||||||||||||| |||| ||| |||| ||||||
Sbjct 1266 CAAGCTTTGTCCAGGA--AATCGACCAGGAGAACTTTTGCTTGAGTTC-TTGATTTCCTC 1322
Query 1327 AGATAAAGCTGCCCGAGTGATTGCTGGGACTGGAACTTCAATGGAGGCGCAGAAAGCAAG 1386
| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1323 AAATAAAGCTGCCCAAGTGATTGCTGGGACTGGAACTTCGGTGGAGGCACAGAAAGCAAG 1382
Query 1387 GAGGGAGAAGAAAAAAGCTGATGCAGCCATGGCCATTAAGTACATCAAAGAGGCCAAAGC 1446
||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1383 GAGGGAGAAGAGAAGAGCTGATGCAGTCATGGCCATTAAGTACATCAAAGAGGTGAAAGC 1442
Query 1447 CGAGACTATGTTTCCTGCTAAAATTCTTAAAAGGTTGGCTGTAGTGAAGAACGATGAATC 1506
|||| |||||||||||||||||||||||||| | || |||| ||||||||||||||||
Sbjct 1443 TGAGAATATGTTTCCTGCTAAAATTCTTAAAAAGCTGATTGTACTGAAGAACGATGAATC 1502
Query 1507 AGCTCAGAGAGCAATGGAACCAGTTCAAAAAAGTTATGAAAAAAGACAGAGTACGACCAA 1566
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1503 AGCTCAGAGAGCAACGGAACCAGTTCATAAAAGTTATGACAAAAGACAGAGTACGACCAA 1562
Query 1567 AGGGGTAGAGAAATCTGAAGCTAAATCTAGTATTCCATATGAACAGAAGCATGTAATCAA 1626
|| ||||| |||| ||||||||||||||| || ||||||||||||||||| || ||| ||
Sbjct 1563 AGCGGTAGGGAAACCTGAAGCTAAATCTATTAGTCCATATGAACAGAAGCGTGAAATTAA 1622
Query 1627 ACGTCCAAGATTAACTGAACCAACAGCTCCTTCTCAGAATTTAACAGTGAAGCAGCCCGA 1686
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1623 ACGTCCAAGACTAACTGAACCAACAGCTCCTTCTCTGAATTTAACAGTGAAGCAGCCCGA 1682
Query 1687 GGTTGTGTGCGTTCCTACTGGGAAGCAAGTTAAAGAATCCGGCGCAGATCATCAGCCAGA 1746
|| ||||| || |||| |||| ||||| ||| ||||||| || | | |||||||||||||
Sbjct 1683 GGGTGTGTCCGCTCCTTCTGGTAAGCAGGTTGAAGAATCTGGAGTAAATCATCAGCCAGA 1742
Query 1747 CACCATAGCAACTCATCCATCAGGTACCGAAACC-AAGCTTAACATTCTCTCTGGTTCCA 1805
||| ||| ||||||||||| || |||| |||||| | || ||||||||||||||||||||
Sbjct 1743 CACTATAACAACTCATCCAGCAAGTACTGAAACCGAGGC-TAACATTCTCTCTGGTTCCA 1801
Query 1806 TTAAGGCGGACATGTTAAGGGAGCTAGTAGAAAAGCAACCTCTGAAGGAGAGTGAGGATC 1865
|||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 1802 TTAATGCGGACATGTTAAGGGAGCTAGTAGAAAAGAAACCTCTAAAGGAGAGTGAGGGTC 1861
Query 1866 TCTCAAATGCTCTCAAATGCACACCAGATCCAGCAAAGCTTTTTCTAGACACATCCATGG 1925
|||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1862 TCTCCAATGCTCTGAAATGCACACCAGATCCAGCAAAGCTTGTTCTAGACACATCCATGG 1921
Query 1926 CTTTGTGTCCTACAAACACCGAAGGAGGATACGAGTTCAAGATGCTGATTACTTCAGCTA 1985
|| | |||||||||||| |||| || ||||||||||||||| ||||| ||||| |||||
Sbjct 1922 CTCTATGTCCTACAAACGCCGAGGGGGGATACGAGTTCAAGCTGCTGGTTACTACAGCTT 1981
Query 1986 GCTGCTCCTTATTGTTGAATCAGCTGAAGAAGCTCCTGCCTAAAATTGGACATCCTGTGA 2045
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 GCTGCTCCTTATTGTTGGATCAGCTGAAGAAGCTCCTGCCTAAAATTGGACATCCTGTGA 2041
Query 2046 AAGGCGATGCGAAGAAACTTGCCGTTTACTGGAAAGATAAAATTGCAAAGAGCAAAAGAG 2105
||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 2042 AAGGCGATGCGAAGAAACTTGCCATTTACTGGAAAGATAAGATTTCAAAGAGCAAAAGAG 2101
Query 2106 ATCAATTAGAAGTCATCTGCTTCCTACAGTTTCTTGGTATCTTTGGAATTGTGTCAGAGT 2165
|| |||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 2102 ATGAATTGGAAGTCATTTGCTTTCTACAGTTTCTGGGTATCTTCGGAATTGTGTCAGAGT 2161
Query 2166 TCAAGGCTGATGACCTTCTTGGTCTACTGGATAATTCTTATTGGCAAACTGTGTCTCCTG 2225
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2162 TCAAGGCTGATGACCTTCTTGGTCTACTGGACAATTCTTATTGGCAAACTGTATCTCCTG 2221
Query 2226 ATCTTTGCCAGTTTCTCGGGTTGGACGACGCCATTCCAGGTTTCATTCAAAATCTCATAA 2285
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2222 ATCTTTGCCAGTTTCTCGGGTTGGACAAGGCCATTCCAGGTTTCATTCAAAATCTCATAA 2281
Query 2286 AAACTGGACATCGTATCAAGGCAATAGACTACATATACTCATTTGGTATGGTCCATAGAT 2345
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 AAACTGGACATCGAATCAGGGCAATAGACTACATATACTCATTTGGTATGGTCCATAGAT 2341
Query 2346 TCCAACCTGTATCCGCTATCATAAACGATTCCTTGAGGATTACAAAGGAATCTGCAGAGA 2405
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2342 TCCAACCTGTATCCGCTATTATAAACGATTCCTTGAGGATTATAAAGGAATCTGCAGAGA 2401
Query 2406 AGTCGTATAGAGAAGCCAAGAACGAATCTACAACGCAGGTTGCAGCCATAGACAGACAGG 2465
||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
Sbjct 2402 AGTCGTATAGAGAAGCCAATAACGAATCTGCAAAGCAGGTTGCAGCCATAGACAGACAAG 2461
Query 2466 TTAGAGCACTAAGAGCCGCCATTAAATGCATATCGTGTCATAAACTCGAATCAGAGTTCC 2525
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2462 TTAGAGCACTTAGAGCCGCCATTAAATGCATATCGTGTCACAAACTTGAATCAGAGTTCC 2521
Query 2526 AACTCGGAGACCTTGAAGAACAAATCAAGTCGCTTTTGAAGCTCAGAAGAAACACT-TCT 2584
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 2522 AACTCGGAGACCTCGAAGAACAAATCAAGTCGCTTTTGAAGCTTAGAAGAAACACAGT-T 2580
Query 2585 AATGGATCTGGATCCGGATCCGCATCGTCCAAACCCGATTCGACAATCAAACAATCTCAG 2644
| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2581 AGTGGATCTGAATCCGGATCCGCATCGTCCAAACCTGATTCGACAATCAAACAATCTCAG 2640
Query 2645 ACGGCAAAACCACCAACTGTAGCAGAGGTTGCTCCTGTTACTAGCAACATACCTTTGGAA 2704
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 2641 ACGGCAAAACCACCAACTGTAGTAGAGGTTGCTTCTGTCACTAGCAACATACCTTTGGAA 2700
Query 2705 CCTTCAACAGAAGCTGCATCCTCCTCTGCGAGCAAACCGTTTTCAA--A-GAAGAATAAG 2761
|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 2701 CCTTCAACAGAAGCTGCATCCTCCTCTGTGAGCAAACCGTTTTCAACGAAGAAGAATAAG 2760
Query 2762 AGAGGGAAAAAACGCAGCATGTCAGGAAACAATCAGAGCTCAGGACACATTGCTTCGCAC 2821
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct 2761 AGAGGGAAAAAACGCAGCCTGTCAGGAAACAATCAGAGCTCAGGACATGTTGCGTCGCAC 2820
Query 2822 ACAAGCAATCACTATCCCAGCCATGACTATTCCCTGAATCAAAGACTAACGTGGCCGGTC 2881
|| |||||||||| ||||| ||||||||||||| |||||||||||| ||| |||||||||
Sbjct 2821 ACGAGCAATCACTTTCCCAACCATGACTATTCCTTGAATCAAAGACAAACTTGGCCGGTC 2880
Query 2882 GACAACTACGACAGAGGTTTCACCGGATTTCCTAACCCCGACTACAATAATAACCAATGG 2941
||||||||||||||||||||||||||||||| | | | ||||||||| ||||||| |||
Sbjct 2881 GACAACTACGACAGAGGTTTCACCGGATTTC--A-CGCAGACTACAATTATAACCAGTGG 2937
Query 2942 GGACAACCAGAGGGA-CCTCAATTTTACCATCTTTATCAACCGCTAGATCCTCGCTACAG 3000
|||||||||||||| || ||||||||||| | ||||||||| || |||||| ||||||
Sbjct 2938 AGACAACCAGAGGGATCC-CAATTTTACCAACATTATCAACCTTTAAATCCTCACTACAG 2996
Query 3001 GAACTACTAGCCGCTACTTTACTATTA 3027
||||| ||||||||| ||||||| |||
Sbjct 2997 GAACTTCTAGCCGCTCCTTTACTTTTA 3023
Score = 505 bits (273), Expect = 1e-141
Identities = 323/345 (94%), Gaps = 11/345 (3%)
Strand=Plus/Plus
Query 132 TTATTAGGGTTTTATTGTTAACGAGTAGCTTGATGGAGAAGGTAACGAGTGGCTTAGAGC 191
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2 TTATTAGGGTTTTATTGTTAATGGGTAGCTTGATGGAGAAGGTAACGAGTGGCTTAGAGC 61
Query 192 TTGTTGATATAAGCAAGCGTAACTTCCGCAAAACCCTAGAATCTCTCCAAGAAGGTGCTC 251
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTGTTGATTTAAGCAAGCGTAACTTCCGCAAAACCCTAGAATCTCTCCAAGAAGGTGCTC 121
Query 252 ATTCGCTTCTTCTACTTACAATTCAATGGAAAGAGATCGAATCGTATTTCGATTCCACGA 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 122 ATTCGCTTCTTCTACTTACAATTCAATGGAAAGAGATCGAATCGTATTTCGATTCCACCA 181
Query 312 GAAGCGTCCTCGAGGAACGAGCCAAGGAGCTAGAAGCGTTGGAGGAATCGATAAAGGTTA 371
||| ||||||||||||||||||||||||| | | |||||||||||| | |||||
Sbjct 182 GAAACGTCCTCGAGGAACGAGCCAAGGAG-T-------T-GGAGGAATCGATGATGGTTA 232
Query 372 AAGCTTTGGAATTGGAGAAGAAAGAGAAGGAGCTTTGTTTGATTGATGAGTCGATGAAAG 431
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 233 AAGCTTTGGAATTGGAGAAGAAGGAGAAGGAGCTTTGTTTGATTGATGAGTCGATGAAAG 292
Query 432 CGAAACAGAGCGAGTTTgagaagaaggagaaggat-tttgatttg 475
|||||||||||||| | ||||||||||||||||| |||| ||||
Sbjct 293 CGAAACAGAGCGAGCTCGAGAAGAAGGAGAAGGAGCTTTG-TTTG 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121555888162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5