BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27240.1
Length=3315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489601 jgi|Araly1|489601|fgenesh2_kg.6__2735__AT5G27240.1 4028 0.0
> Ahg489601 jgi|Araly1|489601|fgenesh2_kg.6__2735__AT5G27240.1
Length=3315
Score = 4028 bits (2181), Expect = 0.0
Identities = 3006/3384 (89%), Gaps = 138/3384 (4%)
Strand=Plus/Plus
Query 1 ATGGACTGGAATAAAGAAGAGGCATGTAGGGCAAAAACATTAGCAGAGGATAAGATGAAG 60
|||||||| ||||| |||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGACTGCAATAAGGAAGAGGCCTCTAGGGCAAAAACTTTAGCAGAGGATAAGATGAA- 59
Query 61 GAA-GGTGATTTTGTTGGGGCTCAGAAGCTTTTGTTGAAGGCTCAGAGTCTCTTT-TCAG 118
||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||| ||||
Sbjct 60 GAATGGTGATTTTGTTGGGGCACAAAAGCTTTTATTGAAGGCTCAGAGTCT-TTTCTCAG 118
Query 119 GTCTTGAGAGTTTACCACAAATGTTAGCTGTATGTGATGTCCATAATTCTGCCGAGAAGA 178
||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 119 GTCTTGAGACTTTACCACAAATGTTAGCCGTATGTGATGTCCATAATTCTGCTGAGAAGA 178
Query 179 AAATCAACTGTCTTGAAAACTGGTACGGTATTCTTCAAGTTATGCATTTTGCTGACGATG 238
|| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AACTCAACGGTCTTGAGAACTGGTACGGTATTCTTCAAGTTATGCATTTTGCTGACGATG 238
Query 239 CTACAATCAAGAAGCAGGTCAGGAAGCTCGCGTTGCTTCTCCATCCTGACAAAAACCAGT 298
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 239 CTACAATCAAGAAGCAGGTCAGGAAGCTTGCTTTGCTTCTCCATCCTGACAAAAATCAGT 298
Query 299 TCCCCGGTGCTGAGGCTGCTTTCAAGCTGGTTTGGGATGCTAGCAGATTTCTCGCTGACA 358
|||| ||||||||| ||||||||||| ||||||||||||| || |||||||| |||||||
Sbjct 299 TCCCTGGTGCTGAGTCTGCTTTCAAGTTGGTTTGGGATGCAAGTAGATTTCTTGCTGACA 358
Query 359 AGGATAAACGGTCTCAGTATGATATAAGGCGCAGAATCTATTTAC-GGTTGGCTACTAAC 417
||||||||||||||||||||||||||| ||| ||||||||||||| |||| |||| | ||
Sbjct 359 AGGATAAACGGTCTCAGTATGATATAAAGCGTAGAATCTATTTACGGGTT-GCTAGTTAC 417
Query 418 CAGTTGAAT---GCAAACTCTGGTCTACAATGTGCTGCTACAAACAGTGCCACTGATACA 474
||||||||| ||||||| |||||||||| || || | ||||| | || ||||
Sbjct 418 CAGTTGAATGCAGCAAACTATGGTCTACAA--TG-TG---C---CAGTGATAGTGTTACA 468
Query 475 TTTTGGACATGTTGTGAGCATTGTGGCTATAGGTATAAATATTTGAGAAAGTATGTGAAC 534
|||||||||||||||||||||||||| |||||||||| ||| |||| | |||||| |||
Sbjct 469 TTTTGGACATGTTGTGAGCATTGTGGTTATAGGTATAGATACTTGATAGAGTATGCGAAT 528
Query 535 ATTCTTCTG-AACTGTAACATTTGTCAAAGATCCTACATGGCCTACGACACTGGATTTAA 593
| ||||||| || |||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 529 ACTCTTCTGCAA-TGTACCAGTTGTCAAAGATCCTACATGGCCTACGACACGGGATTTAA 587
Query 594 TGAAGCACCATCTAAATCAAACACTGGTCAAAAAGAAGTTCAAAATCAGGGTCCCTGTAA 653
|| |||| ||| |||||||| ||||||||| ||||| |||| ||||||||| || |||||
Sbjct 588 TGGAGCATCATTTAAATCAAGCACTGGTCAGAAAGATGTTCGAAATCAGGGGCCGTGTAA 647
Query 654 CACATCCT-TGAATACAAATGGGGAGTCTATTGGTGCTCAACCAGGAAGTGTAGCAGCTG 712
||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 648 CACAT-CTGTGAATATAAATGCAGAGTCTACTGGTGCTCAACCAGGAAGTGTAGCAGCTG 706
Query 713 AGGTGGATAAGAAAGGAACTTTCAACAAGAAATTCAACAAGAGGAATGGTGGAGGTGAGA 772
||||||||||||||||||||||||| || |||||||||||| ||| || ||||||||||
Sbjct 707 AGGTGGATAAGAAAGGAACTTTCAATGAGGAATTCAACAAGAAGAACGGAGGAGGTGAGA 766
Query 773 GCaaaaaaaCTGAAGT-AAAAAACTCCAAAATAGAGACTGAATTCGTG-AG-G--A--AT 825
|||||| ||| | || ||||||| |||||| | || |||||| | || || | | |
Sbjct 767 TCAAAAAGACTCATGTAAAAAAAC-CCAAAAGAAAGGCTGAATCCATGAAGAGTTATGCT 825
Query 826 G-AT---G---A--T--G--AG--GA---AAAGATGAAGAGTGCAGCTAAACTACACAAG 867
| || | | | | || || ||||||||| ||||||||||||||||| |||
Sbjct 826 GAATCAAGTATACCTGAGAAAGACGAGGGAAAGATGAATAGTGCAGCTAAACTACAGAAG 885
Query 868 CCACATCCTGAGGTTACAGAACCTGAAATAGGCGCATCAAAATCTGTACCTGATGAGTCA 927
||||| ||||||| ||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 886 CCACAACCTGAGGCTACAGAACCCGAAATAGGTTTATCGAAATCTGTACCTGATGAGTCA 945
Query 928 GTTTCAAGGAGTGATGAAGCACCCTCTACGAGCAAGGACAAGAACAAGATGAAAAAAG-G 986
|||||||||||||| ||| ||||||||| |||||||||| |||||||| | |||||| |
Sbjct 946 ATTTCAAGGAGTGATCAAGTACCCTCTACAAGCAAGGACAGGAACAAGA-GGAAAAAGTG 1004
Query 987 TGTTGAGGAGAGTATTAATGTTGATGGTTCTGATTTTATTAAGGATAAAGCGTATTCAAA 1046
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1005 TGTTGAGGAGAGTATTAATGTTGATGGTTCTGATATTGTTAAGGATAAAGCGGATTCAAA 1064
Query 1047 AGATAATAATAAGAGGAAATCTCCAAGGAGAAGCCAACAAAGTTCTTACGCTGAGGAGGA 1106
||||||| |||| ||||||||||||||||| ||||||| ||||||| || | ||| |
Sbjct 1065 TGATAATAGTAAGTGGAAATCTCCAAGGAGATGCCAACAGAGTTCTTGGGC--A-GAGAA 1121
Query 1107 GAAAATCAGTGATAATTCCCTAGGCCCTCCaaaaaaaaGGTTAAGATCAAATGTCGGATT 1166
| | ||||||| | || |||||||||||||||||| |||||||||||| || ||
Sbjct 1122 GGTAGGCAGTGATGA-----TA-GCCCTCCAAAAAAAAGGTCAAGATCAAATGTTGGGTT 1175
Query 1167 GAAATCTGAACAAACTACAAGAAAAGGATTAGTAGGTGTTGGATCATCTAAACGTTTTGA 1226
|||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1176 AAAATCTGAGCAAACTACAAGAAAAGGATTAGTAGGTGTTGGATCATCTACACGTCGTGA 1235
Query 1227 TTCTGGTGGTGGTTCATCTGCCCCTTCATGTGCGTTTAAAAGAAAAGCTAAGAAATTTGT 1286
|||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 1236 TTCTGGTGGTGGTTCAACTGCCCCTTCATGTGTGTTTAATGGAAAAGCTAAGAAATTCGT 1295
Query 1287 GGATTCTGGATATCAAGAAATCTCATCTGT-CAAAGACAAAGAGAGGGAAGTACGTAAAG 1345
||||||||||||||||||||||||| | | ||||||||||| ||| |||| | ||||||
Sbjct 1296 GGATTCTGGATATCAAGAAATCTCAGC-ATCCAAAGACAAAGTGAGAGAAGGATGTAAAG 1354
Query 1346 CAAGTGGAGAAGGGGTGGTTATGGAAGCAAAGATTGACAATAACCACAATCCTAATGAAA 1405
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 1355 AAAGTGGAGAAGGGGTGGTTATGGCAGCAAAGATTGACAATAACCACAATGCTAATGAGA 1414
Query 1406 ATCTTATTACAG-AGGATTTGCCTGATCCAGAGTTCAGTAATTTTGAACTGACAACAAGC 1464
| |||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1415 AGCTTATTAC-GCAGGATTCGCCTGATCCAGAGTTCAGTAATTTTGAACTGACGACAAGC 1473
Query 1465 TGTTTTGGTGTCAACCAGGTGTGGTCCATGTACGATCCGATTGATGGTATGCCTCGGTTG 1524
||||||| |||||||||||||||||| |||| ||||||| ||| |||||||||||||||
Sbjct 1474 TGTTTTGCTGTCAACCAGGTGTGGTCTTTGTATGATCCGACTGACGGTATGCCTCGGTTG 1533
Query 1525 TATGCTCGGATAGACAAAGTGTTGG-TTCCTGAGTTCAAGTTGTGGATTACGTGGATTGA 1583
|||||||||||||| |||||||||| || ||||||||||| |||||||||| ||||||||
Sbjct 1534 TATGCTCGGATAGAAAAAGTGTTGGATT-CTGAGTTCAAGCTGTGGATTACATGGATTGA 1592
Query 1584 CCCGCTTCAGGATAATAAAGATAACTCTATCCCCATTGCTTGTGGAATCTTTCAAGGTGG 1643
|||||| |||| || | |||||||||| ||||||||||||||||||||||||| |||
Sbjct 1593 CCCGCTACAGG---AT--A-ATAACTCTATTCCCATTGCTTGTGGAATCTTTCAAGTTGG 1646
Query 1644 GGGTTCAGAGGAAGAGAACGATCACTTAAAATTTTCTTGTCAGATGTTTCACTTAACTCG 1703
|| ||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1647 GGATTCAGCCGAAGAAAACGACCACTTAAAATTTTCTAGTCAGATGTTTCACTTAACTCG 1706
Query 1704 CAACAATAGCGTTGTCATATATCCAAGAAAGGGAGAAATTTGGGCAATTTTCAGAGGCTG 1763
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 CAACAATAGCATCGGCATATATCCAAGAAAGGGAGAAATTTGGGCAATTTTCAGAGGCTG 1766
Query 1764 GGATATCAGTTGGAGTGCTAGCTCAGAAAATCATAAACATCCTTATGAATATGAT-TTTG 1822
|||||||||||||| | | ||| || ||| ||| || | || || | || ||
Sbjct 1767 GGATATCAGTTGGA--G-T-GCT-AG---CTCAGAAA-AT-C--AT-AA-A-CATCCTTA 1811
Query 1823 TGGAAGTTTTGTCTAATTTTAACGATGAGAATGGCCTTGGAGTGGGCTTTCTGGGAA-AA 1881
| ||| | || ||||| || |||||||||||||| ||||||||||| ||
Sbjct 1812 T-GAA--TATG----ATTTT----AT-----TGGCCTTGGAGTGGTCTTTCTGGGAACAA 1855
Query 1882 GTTGAAGGGTTTGTTTCCCTCTTTCGCCAAGATGCACAGGATGGAGTTCTCCAACTTCAG 1941
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1856 GTGGAAGGGTTTGTTTCCCTCTTTCGCCAAGATGCACAGGATGGAGTCCT-CAACTTCAA 1914
Query 1942 ATTCCACCAAGCCAGATGCTCAGGTTTTCACATAAAGTCCCATCATTCAAAATGACTGGA 2001
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1915 ATTCCACCCAGCGAGATGCTCAGGTTTTCGCATAAAGTCCCATCATTCAAAATGACTGGA 1974
Query 2002 AAAGAGAGAGAAGGTGTTCCTCCTGGGTGCTTTGAATTAGATCCCGCTGCTTTACCAAAA 2061
|| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1975 AAGGAGAGAGAAGGTGTTCCTCCTGGGTGCTTTGAATTAGATACTGCTGCTTTACCAAAA 2034
Query 2062 GAATTGTTCGAGGTTTATGATTCTAAAGTTGATGTTGGGTTGGATAGAGAATTGCCGAAT 2121
||||| |||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2035 GAATTTTTCGAGGTTTGTGATTCTAAAGTTGATGTTGGGTTGGAGAGAGAAAGGCCGAAT 2094
Query 2122 GGTAAAACTGGTGGTCCTTTTCCTGAAGCTTCCAAGGTTGAAATGCAGGCAAACACTAC- 2180
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2095 GGCAAAACTGGTGGTCCTTTTCCTGAAGCTTCCAAGGTTGAAATGCAGGCAAATACTACT 2154
Query 2181 CAGAGAGAGCAGTCCATTTAAAAAGAAACGTCCAAAAGTCCATGATAATCATGGTTCATT 2240
| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2155 C-TAGAGAGCAGTCCAGTTAAAAAGAAACGTCCAAAAGTCCATGACAATCATGGTTCATT 2213
Query 2241 CTCCAAAGAATCTGATGGTAGACGCACTAATCATGAAAGGAACTCAGCGAAGGAGTCCAG 2300
|||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||
Sbjct 2214 CTCCAAAGAATCTGATGGTAGATGCACTAATCATGAAAAGAACTCAGTGAAGAAGTCCAG 2273
Query 2301 AAAGAGTGTCAAAGCAGTAGATGCCTTGAATCTGCGAAAATCTCCTCGTCTTTTGAGTGA 2360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2274 AAAGAGTGTCAAAGCAGTAGATGTCTTGAATCTGCGAAAATCTCCTCGTCTTTTGAGTGA 2333
Query 2361 AACAAACAGTCAAGCAAATTCAAGGTCAGGCCGACAAATAGCTGAGAAGAAGAGTGCTAA 2420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2334 AACAAACAGTCAAGCAAATTCAAGGTCAGGCCAACAAATAGCTGAGAAGAAGAGTGCTAA 2393
Query 2421 CAATGGTGAATCCTGTGGAAAGCCAGGTGGATTGTCTTTATCTGGTGAGA--A-G----- 2472
||||||||||| ||||||| ||| |||||| ||||||||||||||||||| | |
Sbjct 2394 CAATGGTGAATACTGTGGACAGCGAGGTGGGTTGTCTTTATCTGGTGAGAGGATGTCTAC 2453
Query 2473 ----ATG---TCTGAGAAGACTAT-----C--A-----CAAGAATGAGAAAAACACCTCA 2513
||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 2454 CCCAATGATATCTGAGAAGACTATCACAACGGATTCCTCAAGAATGAGAAAAACACCTCA 2513
Query 2514 GGATATACACAAACCGACAGTGAACGTAAAGAAACATGGAAGAAATGATGAGTCATTGTC 2573
|||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 2514 GGATATACACAAACCGACAGGGAACCTAAAGAAACATGGGAGAAATGATGAGTCATTGTC 2573
Query 2574 TCAGTCCAGGGGTGATGGTTTGCTGACTCAGTTAAATGGTAATATGAAAA-GCTCAGAAC 2632
||||||||||||| |||||||||| |||||||| ||||||| ||| |||| |||||||||
Sbjct 2574 TCAGTCCAGGGGTAATGGTTTGCTAACTCAGTTGAATGGTAGTAT-AAAATGCTCAGAAC 2632
Query 2633 CAGAGACTCGCGTGCCATCTAGTTGCAAAACCGTGAAAGAAAACACTTTTAACTTCGAGA 2692
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2633 CAGAGACTCGTGTTCCATCCAGTTGCAAAACCGTGAAAGAAAACACTTTTAACTTCGAGA 2692
Query 2693 ACCAGAGATCATGGGACAAATTCCAGATTGATCAAATATGGGCTATTTACAGCAATGACA 2752
|||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 2693 ACCAGAGATCTTGGGACAAGTTCCAGATTGATCAAATATGGGCCATTTATAGCAATGACG 2752
Query 2753 AAGGGAGTCCCAGAAAGTATGCTCAGATCAAGAAAATCGACACAAGTCCTGAATTCAAGT 2812
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2753 AAGGGATTCCCAGAAAGTATGCTCAGATCAAGAAAATCGACACAAGTCCTGAATTCAAGT 2812
Query 2813 TACATGTAGCACCTCTAGAGCTGTATCGCCCTCCAATACACATGCCACGCCCAGTGTGCT 2872
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2813 TACATGTAGCACCTCTAGAGCTGTATCGCCCTCCAATACACATGCCACGCCCCGTGTGCT 2872
Query 2873 GTGGCCGCTTCAAGTTGAAAACCGGTAAAGCCGAAGTATATGTACCTAGCAGCTTCTCAC 2932
|||| |||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 2873 GTGGGCGCTTCAAGTTGAAAACCGGTAAAGCAGAAATATTTGTACCTAGCAGCTTCTCAC 2932
Query 2933 ATCAGGTTAAAGCTGTCAAGACTAAGAAGAACAGATTCGAAGTATACCCAGGGAAGGGTG 2992
||||||||||||| || ||| |||||| ||||||||||||||||||||| ||||||||||
Sbjct 2933 ATCAGGTTAAAGCCGTGAAGGCTAAGAGGAACAGATTCGAAGTATACCCGGGGAAGGGTG 2992
Query 2993 AGATCTGGGCTCTGTACAAGAACTGCAACACAAGAGATTATACTGAGACGGAAGAACTTG 3052
||||||||||||||||||||||||| || || | ||||| | |||| || ||||||||||
Sbjct 2993 AGATCTGGGCTCTGTACAAGAACTGGAATACCACAGATTGTGCTGATACTGAAGAACTTG 3052
Query 3053 AGATTGTAGAAGTAGTGGAAACCGACGAGCAGAGGATACAAGCAATGACTTT-GACTGCT 3111
||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||
Sbjct 3053 AGATTGTAGAAGTAGTGGAAACCGACGAGCAAAGGATACAAGCGATG-CTTTTGACTGCT 3111
Query 3112 AAAGGGTTTAACAACAAGCCTCTATACAGAAGGAGTGAAGAGTCAAACGCAAGTTTTATT 3171
|||| |||||||||||||||||| ||| |||| ||| |||||||||| |||||| || |
Sbjct 3112 AAAGAGTTTAACAACAAGCCTCTCTACGGAAGTAGTCAAGAGTCAAATGCAAGTCTTGTA 3171
Query 3172 GACATTCCAAAGACTGAAGTGTGTCGATTCTCGCATCAGATTCCTGCGTTTAGACACGAG 3231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 3172 AACATTCCAAAGACTGAAGTGTGTAGATTCTCGCATCAGATTCCTGCGTTTAGACATGAG 3231
Query 3232 AGTAGAGCGACACGGTTTGGAGATGGCCAATACTGGGAGCTTGACCTTAAAGCAGTTTTG 3291
|| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 3232 AGAAGAGCGACTCGGTTTGGAGATGGCGAATACTGGGAGCTTGACCTGAAAGCAGTTAGG 3291
Query 3292 GGTCTCAACTTAAAGAACCCATAG 3315
||||||||||||||||||||||||
Sbjct 3292 GGTCTCAACTTAAAGAACCCATAG 3315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125133300024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5