BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27260.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496320 jgi|Araly1|496320|fgenesh2_kg.8__2136__AT5G27260.1 712 0.0
Ahg924296 jgi|Araly1|924296|scaffold_105577.1 658 0.0
> Ahg496320 jgi|Araly1|496320|fgenesh2_kg.8__2136__AT5G27260.1
Length=879
Score = 712 bits (385), Expect = 0.0
Identities = 608/708 (86%), Gaps = 45/708 (6%)
Strand=Plus/Plus
Query 1 ATGGGAGATTCACAACCCaaaaaaagaaaaaaGGGGGATTATAATCCGTGGTCTCCAGAG 60
||||||||| || || || ||| || |||||||||| || | |||| |||||||||||||
Sbjct 1 ATGGGAGATGCAGAA-CC-AAAGAA-AAAAAAGGGGAATAACAATCTGTGGTCTCCAGAG 57
Query 61 GAGACTAAGCTGTTGGTGCAACTTCTTGTGGAAGGGATCAACAATAATTGGCGTGATTCT 120
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 GAGACTAAGCTGTTGGTACAACTTCTTGTGGAAGGGATCAATAATAATTGGCGTGATTCT 117
Query 121 AATGGCACAATCAGTAAATTAACCGTGGAAACGAAG-TTTATGCCGGAGATCAACAAAGA 179
||||| ||||| ||||||||||||||||| |||||| ||| | || || |||||||||||
Sbjct 118 AATGGTACAATGAGTAAATTAACCGTGGAGACGAAGATTT-TACCAGAAATCAACAAAGA 176
Query 180 GTTTTGTCGTTCAAAAAACTACAATCACTACTTAAGCAGAATGAAGTATTTAAAAATACA 239
|||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 177 GTTTCGTCGTTCAAAAAACTACAATCACTACCAAAGCAGAATGAAGTATTTAAAATTACA 236
Query 240 ATACCAAAGTTGTCTTGATCTTCAGCGTTTTAGTTCTGGTTTTGGTTGGGATCCTTTAAC 299
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 237 ATACCAAAGTTCTCTTGATCTTAAGCGTTTTAGTTCTGGTTTTGGTTGGGATCCTTCGAC 296
Query 300 AAAAAGATTTACGGCTTCTGATGAAGTTT-GGAGCGACTATCTAAAAGCACATCCGAACA 358
|||||||||||| ||| |||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 297 AAAAAGATTTACCGCTCCTGATGAAGTTTGGGA-CGATTATCTAAAAGCACATCCGAACA 355
Query 359 ATAAACAACTTCGTTATGATACATTTGAATTTTTTGACGAGTTGCAAATCATATTTGGGG 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 356 ATAAACAACTTCGTTATGATACATTTGAATTTTTTGAAGAGTTGCAAATCATATTTGGGG 415
Query 419 AAGGTGTTGCTACTGGAAAAAATGCAATTGGATTATGTGATAGTACGGATG--G-ACTTA 475
|||||||||||||||| ||||||||||||||||| |||||||||||||||| | | ||
Sbjct 416 AAGGTGTTGCTACTGGGAAAAATGCAATTGGATTGTGTGATAGTACGGATGCTGCAATTG 475
Query 476 CGTACAGAGCTGG-AG-A-GAATCCAAGAAA--AGAA-TATGTGGATGATTTT--GACAA 527
| | | | || || | | || || | | | || | || ||| || || || ||
Sbjct 476 -G-ATTGTG-TGATAGTACGGATGCACGTACGTACAAATCTGGGGA-GAATTCAAGAGAA 531
Query 528 CGTGTATGAGTA-TGATACT-ACAAC--TCATCATGAGTCATCGGAGCACTACGCACCAT 583
| |||| | | |||| | ||||| |||||| ||| ||| | | | || || |
Sbjct 532 -GAATATGTG-AGTGATTTTGACAACGGTCATCA-GAG-CATT--A-CGC-AC-CA---T 579
Query 584 TTATGTCTCATGGAACTTCAGAAAGTCCTA-AG-----CTTCCCCC-ACGTAAAAGAACA 636
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 580 TTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAAGCTTCCCCCCACGTAAAAGAACA 639
Query 637 AGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTT 684
||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 640 AGATCTGAGAGAAATACTTCACAAAAAGAAGAAAGTTCTATGATGGTT 687
Score = 276 bits (149), Expect = 2e-73
Identities = 178/192 (93%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 722 AAGAGAGGCAACAAAATGAAGTGGCACAGAAAAAGAA-TAACGTTTGGGATGCTATAAAA 780
||||||| |||||||| ||||||||||| ||||| || |||||||||||||||| |||||
Sbjct 688 AAGAGAGACAACAAAAAGAAGTGGCACAAAAAAAAAATTAACGTTTGGGATGCTCTAAAA 747
Query 781 GAAATTTCTGACTTGGATGAATGTATTCGTTACAAGGCACTTACGAAAATTTATCATTTG 840
||| |||| || ||||||||| ||||||||| |||||||||||| || ||||||||||||
Sbjct 748 GAAGTTTCAGATTTGGATGAACGTATTCGTTTCAAGGCACTTACCAAGATTTATCATTTG 807
Query 841 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGGATTCAAACC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGGATTCAAACC 867
Query 901 ATTATGGAATAA 912
| ||||||||||
Sbjct 868 AGTATGGAATAA 879
> Ahg924296 jgi|Araly1|924296|scaffold_105577.1
Length=587
Score = 658 bits (356), Expect = 0.0
Identities = 427/460 (93%), Gaps = 10/460 (2%)
Strand=Plus/Plus
Query 461 GTACGGATGGACTTACGTACAGAGCT-GGAGAGAATCCAAGAAAAGAATATGTGGA-TGA 518
||||||||| || |||||||| |||| ||| ||||| ||||| |||||||||| || |||
Sbjct 109 GTACGGATGCACGTACGTACAAAGCTGGGA-AGAATTCAAGAGAAGAATATGT-GAGTGA 166
Query 519 TTTTGACAACGTGTATGAGTATGATACTACAACTCATCATGAGTCATCGGAGCACTACGC 578
||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 167 TTTTGACAACGGGTATGAGTATGATACAACAACTCATCATGAGTCATCAGAGCATTACGC 226
Query 579 ACCATTTATGTCTCATGGAACTTCAGAAAGT-C--C---TAAGCTTCCCCCACGTAAAAG 632
|||||| |||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 227 ACCATTCATGTCTCATGGAACTTCAGAAAGTCCAACGGAGAAGCTTCCCCCACGTAAAAG 286
Query 633 AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTGTTAGCAG 692
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 287 AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTCTTAGCAG 346
Query 693 TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAATGAAGTGGCACAGAA 752
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 347 TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAAAGAAGTGGCACAAAA 406
Query 753 AAAGAATAACGTTTGGGATGCTATAAAAGAAATTTCTGACTTGGATGAATGTATTCGTTA 812
||| |||||||||||||||||| |||||||||||||||| |||||| || |||||||||
Sbjct 407 AAAAAATAACGTTTGGGATGCTCTAAAAGAAATTTCTGATTTGGATAAACGTATTCGTTT 466
Query 813 CAAGGCACTTACGAAAATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT 872
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CAAGGCACTTACCAAGATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT 526
Query 873 GGAAGAGAGGCTAGGATGGATTCAAACCATTATGGAATAA 912
||||||||||||||||||||||||||||| ||||||||||
Sbjct 527 GGAAGAGAGGCTAGGATGGATTCAAACCAGTATGGAATAA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5