BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27280.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489599 jgi|Araly1|489599|fgenesh2_kg.6__2733__AT5G27280.1 937 0.0
> Ahg489599 jgi|Araly1|489599|fgenesh2_kg.6__2733__AT5G27280.1
Length=801
Score = 937 bits (507), Expect = 0.0
Identities = 700/787 (89%), Gaps = 37/787 (5%)
Strand=Plus/Plus
Query 55 GATCAACCATGGAAGCTACCTCTCTAAGCTCTGCAGCAACAATCATCTCCTCCTCATCTT 114
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 GATCAACCATGGAAGCCACCTCTCTAAGCTCTGCAGCAACAATCATCTCCTCCTCATCTT 83
Query 115 CCCCACTCTCCATATTCTCTCCAAAGAAGCGAACAGACTCATCACCTCCCCCGAGAATCG 174
| ||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 84 CACCACTCTCCATCTTCTCTCCCAAGAAGAGAACAGACTCATCACCTTCCCCGAGAATCG 143
Query 175 TCCGTCTCTCGAACAAGAAGGAAGACAAAGATTACGATC-CGCAACATTCCGAATCGAAC 233
|||||||||| || ||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 144 TCCGTCTCTCCAAGAAGAAGGAAGACAAAGATTACGATCTC-CAACAATCCGAATCGAAT 202
Query 234 TCATCAA-------G-C-CTCTTCCGGAATCGAACTCTCTCCAATGATGAAGCAATGGGA 284
||||||| | | |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 203 TCATCAAGCCTCGTGCCTCTCTTCCGAAATCGAACTCTCTCCAATGATGAGGCAATGGGA 262
Query 285 CTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGACAACCGGTTCCGGTATGGAAGGACCG 344
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 263 TTGGTGTTGAGTGCAGCTTCGGTTAAAGGCTGGACAACTGGTTCCGGTATGGAAGGACCG 322
Query 345 TCTCTACCGGCTAAAACCGATACAGACACGGTTTCCACATTTCCATGGTCATTATTCACT 404
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||
Sbjct 323 TCTCTACCGGCTAAACCCGATACAGAGACGGTTTCAACGTTTCCATGGTCATTATTCACG 382
Query 405 AAATCGCCTCGTAGGCGAATGCGTGTTGCTTTCACTTGTAACGTATGTGGGCAAAGAACT 464
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 383 AAATCGCCTCGTAGGCGAATGCGTGTTGCATTCACTTGTAACGTCTGTGGGCAAAGAACT 442
Query 465 ACAAGAGCTATTAATCCTCATGCTTACACTGATGGCACTGTCTTCGTGCAGTGTTGTGGA 524
|||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct 443 ACAAGAGCTATTAATCCTCATGCTTACACTGACGGAACCGTCTTCGTGCAGTGTTGCGGA 502
Query 525 TGTAATGTGTTTCATAAGCTGGTCGATAATCTCAACTTGTTTCATGAGGTTAAGTATTAT 584
|| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 503 TGCAATGTGTTCCATAAGCTGGTGGATAATCTCAATTTGTTTCATGAGGTTAAGTATTAT 562
Query 585 GTGAGCAGCTCGAGCTTCGATTACACCGATGCTAAGTGGGATGTTAGCGGCTTGAATCTT 644
||||||||||| |||||| | || | ||||||||||||||||||||||| |||||||||
Sbjct 563 GTGAGCAGCTCAAGCTTCAACTATAGAGATGCTAAGTGGGATGTTAGCGGTTTGAATCTT 622
Query 645 TTCGATGATGAGGA---TGATGAT-A-A-TG---------CTGGTGATAGCAATGATGTC 689
|||||||||||||| ||||||| | | || ||||||||||||| || |||
Sbjct 623 TTCGATGATGAGGAGGATGATGATGATAATGATAATGATGCTGGTGATAGCAAAGACGTC 682
Query 690 TTTCCTTTGTAAAGAACCTTTCTACAATATCTTTGTTATATATCTGTAT-ATAGCTACCT 748
|| |||||||||||| |||||||||| | | | || || ||||||| | ||| || ||
Sbjct 683 TTCCCTTTGTAAAGAGCCTTTCTACAGT--CAT-GTGAT-TATCTGTGTTATA--TATCT 736
Query 749 -TGTCATATCATCTTGGTGTGAA-TAACATTTGGAAGTAATAAATTGGTCATATAGCTCA 806
||| ||| ||||||||||| || ||||||| |||| |||||||||||| ||||||||||
Sbjct 737 GTGT-ATA-CATCTTGGTGTCAAATAACATTCGGAAATAATAAATTGGTTATATAGCTCA 794
Query 807 TGTTCTG 813
|||||||
Sbjct 795 TGTTCTG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5