BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27290.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942373 jgi|Araly1|942373|scaffold_602917.1 1720 0.0
> Ahg942373 jgi|Araly1|942373|scaffold_602917.1
Length=1070
Score = 1720 bits (931), Expect = 0.0
Identities = 1025/1070 (96%), Gaps = 7/1070 (1%)
Strand=Plus/Plus
Query 41 ACAAAATCCTTTATTGCTGAATGGTTATGTTGTTACATAGTGTGGGACTAATTCCATGTT 100
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ACAAAATCCTTCATTGCTGAATGGTTATGTTGTTACATAGTGTGGGACTACTTCCATGTT 60
Query 101 CAAACCAACAAAAGTCTTTTCTCTTCCATAGTTATTACCGTTACAGATGCATAGTTTGTT 160
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CAAACCCACAAAAGTCTTTTGTCTTCCATAGTTATTACAGTTACAGATGCATAGTTTGTT 120
Query 161 CATCTGAAACAG-GTTTGTCCATAAGAAGACAAGCT-TTGGAGCAAGTTGATTCTAAGTT 218
|||||||||||| | ||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 121 CATCTGAAACAGCG-TTGTCCACAAGAAGACAAG-TGTTGGAGCAAGTTGATTCTAAGTT 178
Query 219 GTCTAGTGGAGACGAAAGAGCTGCATTGTCTCTTGTCAAAGATCTCCAAGGAAAACCTGA 278
||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 179 GTCTAGTGGAGACGAGAGAGCTGCACTGTCCCTTGTCAAAGATCTCCAAGGAAAACCTGA 238
Query 279 TGGCCTTCGATGTTTTGGCGCTGCAAGGCAGGTGCCTCAGAGACTCTACACGTTGGAGGA 338
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGGGCTTCGATGTTTTGGAGCCGCAAGGCAGGTGCCTCAGAGACTCTACACGTTGGAGGA 298
Query 339 ACTGAAACTGAATGGTATTAACGCAGCTTCACTTCTCTCGCCAACAGATACAACGCTTGG 398
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 299 ACTAAAACTGAATGGTATTAACGCAGCTTCACTTCTCTCACCAACAGATGCAACGCTTGG 358
Query 399 CTCCATCGAAAGAAACCTTCAGATCGCAGCTGTCTCAGGGGGAATAGTTGCTTGGAAAGC 458
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 359 CTCCATCGAAAGAAACCTTCAGATCGCCGGTGTCTCAGGGGGAATAGTTGCTTGGAAAGC 418
Query 459 CTTTGACTTGAGTTCTCAACAGCTTTTCTTTCTTACTCTTGGGTTTATGTTCCTGTGGAC 518
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 419 CTTTGACTTGAGTTCTCAACAGCTTTTGTTTCTTTCTCTTGGGTTTATGTTCCTGTGGAC 478
Query 519 TTTGGATTTGGTCTCTTTTAATGGCGGAATTGGGAGTTTGGTTCTTGATACAACTGGTCA 578
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 TTTGGATTTGGTCTCATTTAATGGCGGAATTGGGAGTTTGGTTCTTGATACAATTGGTCA 538
Query 579 TACGTTTAGCCAACGATACCATAACAGAGTTGTTCAGCACGAAGCGGGTCATTTCTTGGT 638
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 539 TACGTTTAGCCAACGATACCATAACAGAGTTGTTCAACACGAAGCAGGTCATTTCTTGGT 598
Query 639 GGCCTACTTAGTCGGGATTCTACCACGCGGATACACGCTCTCTAGCCTTGAAGCTTTACA 698
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 GGCCTACTTGGTCGGGATTCTACCACGCGGATACACGCTCTCAAGCCTTGAAGCTTTACA 658
Query 699 GAAAGAAGGATCTCTCAACATTCAAGCTGGCTCAGCTTTTGTAGACTATGAATTCCTTGA 758
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 659 GAAAGAAGGATCTCTCAACATTCAAGCTGGTTCAGCCTTTGTAGACTATGAATTCCTTGA 718
Query 759 AGAAGTTAATTCTGGAAAAGTCTCCGCTACGATGCTGAACAGATTCTCATGCATTGCTCT 818
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 719 AGAAGTTAATTCTGGAAAAGTCTCCGCAACCATGCTGAACAGATTCTCATGCATTGCTCT 778
Query 819 GGCTGGTGTAGCAACAGAATATCTCCTGTATGGTTATGCTGAAGGAGGCCTTGACGATAT 878
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 779 TGCTGGTGTAGCAACAGAATATCTCTTGTATGGTTATGCTGAAGGCGGCCTTGACGATAT 838
Query 879 CAGCAAGTTAGATGGTTTGGTGAAGAGTTTGGGGTTCACACAGAAGAAAGCGGACTCGCA 938
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAGCAAGTTGGATGGTTTGGTGAAGAGTTTGGGGTTCACACAGAAGAAAGCGGACTCGCA 898
Query 939 GGTGAGGTGGTCAGTCCTTAACACCATACTGCTACTACGTCGCCATGAGATAGCTCGATC 998
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 GGTGAGGTGGTCAGTCCTTAACACCATACTGCTATTACGTCGCCATGAGATAGCTCGATC 958
Query 999 GAAGCTCGCGCAGGCTATGTCCAAAGGAGAATCTGTCGGATCTTGTATCCAAATCATCGA 1058
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 959 CAAGCTCGCGCAGGCTATGTCCAAAGGAGAATCTGTCGGATCTTGTATCGAAGTCATCGA 1018
Query 1059 AGATTCTATCGATCCTTCTGATATCTAGAAATACAT-G-CT-CTCATCTA 1105
|||||||||||||||||||||||||||||||||||| | || ||| ||||
Sbjct 1019 AGATTCTATCGATCCTTCTGATATCTAGAAATACATTGTCTTCTCTTCTA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5