BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27320.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351756 jgi|Araly1|351756|fgenesh1_pg.C_scaffold_6002349 1624 0.0
Ahg477795 jgi|Araly1|477795|fgenesh2_kg.3__496__AT3G05120.1 933 0.0
> Ahg351756 jgi|Araly1|351756|fgenesh1_pg.C_scaffold_6002349
Length=1035
Score = 1624 bits (879), Expect = 0.0
Identities = 984/1036 (95%), Gaps = 2/1036 (0%)
Strand=Plus/Plus
Query 168 ATGGCTGGAAGTGAAGAAGTTAATCTTATTGAGAGCAAGACAGTGGTTCCTCTCAATACA 227
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTGGAAGTGAAGAAGTTAATCTTATTGAGAGCAAGACAGTGGTGCCTCTCAATACA 60
Query 228 TGGGTTCTAATATCCAACTTTAAGCTAGCTTACAATCTCCTGCGTCGCCCTGACGGAACT 287
|||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 TGGGTTTTGATATCCAACTTTAAGCTAGCCTACAATCTCCTGCGCCGCCCTGACGGAACT 120
Query 288 TTTAACCGTCATCTCGCAGAGTTTCTAGACCGGAAAGTCCCTGCAAATGCCAACCCTGTT 347
|||||||| || || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTTAACCGCCACCTTGCGGAGTTTCTAGACCGGAAAGTCCCTGCAAACGCCAACCCTGTT 180
Query 348 AATGGGGTCTTCTCTTTTGATGTGATCATCGATCGCCAAACTAATTTGCTTAGCAGAGTT 407
|||||||||||||| || ||||| ||||||||||||||||| ||| |||||||| ||||
Sbjct 181 AATGGGGTCTTCTCGTTCGATGTTATCATCGATCGCCAAACCAATATGCTTAGCCGAGTA 240
Query 408 TACAGACCAGCTGATGCTGG-CACTTCACCAAGTATTACTGATCTACAGAATCCTGTTGA 466
|||||||| ||| ||||||| | | |||| |||||||| ||||| |||||||| |||||
Sbjct 241 TACAGACCGGCTAATGCTGGTC-CCCCACCTAGTATTACCGATCTTCAGAATCCCGTTGA 299
Query 467 TGGTGAAATAGTGCCTGTTATTGTCTTCTTTCATGGTGGAAGCTTTGCACATTCTTCTGC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTGAAATAGTGCCTGTTATTGTCTTCTTTCATGGTGGAAGCTTTGCACATTCTTCTGC 359
Query 527 AAACAGTGCTATTTATGATACTCTTTGTCGTAGGCTTGTTGGTTTGTGTGGTGCTGTTGT 586
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 AAACAGTGCTATTTATGATACTCTTTGCCGTAGGCTTGTTGGTTTGTGTGGTGCTGTTGT 419
Query 587 TGTCTCTGTGAATTATCGTCGTGCACCAGAGAATCGATACCCTTGTGCTTATGATGATGG 646
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTCTCTGTGAACTATCGTCGTGCACCAGAGAATCGATACCCTTGTGCTTATGATGATGG 479
Query 647 ATGGGCTGTTTTGAAATGGGTCAACTCGAGTTCTTGGCTTAGAAGCAAGAAAGACTCAAA 706
|||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 480 CTGGGCTGTTTTGAATTGGGTCAACTCTAGTTCTTGGCTTAAAAGCAAGAAAGATTCAAA 539
Query 707 GGTTCGTATTTTCTTGGCGGGTGATAGCTCTGGGGGTAACATTGTGCATAATGTCGCGGT 766
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 GGTTCATATTTTCTTGGCGGGTGATAGCTCTGGGGGTAACATTGTGCATAATGTCGCACT 599
Query 767 AAGAGCGGTTGAGTCAAGGATCGATGTTTTGGGGAACATTTTGCTTAACCCTATGTTTGG 826
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGAGCGGTTGAGTCGGGGATCAATGTTTTGGGGAACATTTTGCTTAACCCTATGTTTGG 659
Query 827 AGGGACCGAAAGAACGGAATCTGAGAAACGTTTGGATGGGAAGTACTTTGTTACGGTTAG 886
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 660 AGGGACCGAGAGAACGGAATCTGAGAAACGTTTGGATGGGAAATACTTTGTGACGGTTAG 719
Query 887 AGACCGAGATTGGTATTGGAGAGCGTTTCTTCCTGAGGGTGAAGACAGAGAGCATCCAGC 946
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 AGACCGCGATTGGTATTGGAGAGCGTTTCTTCCGGAGGGTGAAGACAGAGAGCATCCAGC 779
Query 947 GTGTAGCCCGTTTGGCCCGAGAAGCAAGAGTCTAGAAGGGTTGAGTTTCCCCAAGAGTCT 1006
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 GTGTAGCCCGTTTGGCCCGAGAAGCAAGAGTTTAGAAGGGTTGAGTTTCCCCAAGAGTCT 839
Query 1007 TGTCGTTGTAGCGGGTTTAGATTTGATTCAAGATTGGCAATTGAAGTACGCGGAAGGGCT 1066
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 GGTCGTTGTAGCGGGTTTAGATTTGATTCAAGATTGGCAATTGAAGTACGCGGAAGGACT 899
Query 1067 CAAGAAAGCGGGTCAAGAGGTGAAGCTTCTTTACTTGGAGCAAGCCACTATTGGCTTCTA 1126
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 900 CAAGAAAGCGGGTCAAGATGTGAAGCTTCTCTACTTGGAGCAAGCCACCATTGGCTTCTA 959
Query 1127 CTTATTGCCTAACAACAATCACTTCCATACCGTTATGGATGAGATAGCTGCATTTGTAAA 1186
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 CTTATTGCCTAACAACAATCACTTCCATACCGTTATGGACGAGATAGCTGCATTTGTAAA 1019
Query 1187 CGCAGAATGCCAATGA 1202
||||||||||||||||
Sbjct 1020 CGCAGAATGCCAATGA 1035
> Ahg477795 jgi|Araly1|477795|fgenesh2_kg.3__496__AT3G05120.1
Length=1666
Score = 933 bits (505), Expect = 0.0
Identities = 873/1046 (83%), Gaps = 44/1046 (4%)
Strand=Plus/Plus
Query 168 ATGGCTG-GAAGTGAAGAAGTTAATCTTATTGAGAGCAAG-ACAGTGGTTCCTCTCAATA 225
||||||| | || || ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 187 ATGGCTGCG-AGCGATGAAGTTAATCTTATTGAGAGC-AGAACAGTGGTTCCTCTCAATA 244
Query 226 CATGGGTTCTAATATCCAACTT-TAAGCTAGCTTACAATCTCCTGCGTCGCCCTGACGGA 284
|||||||||||||||||||||| ||| |||| |||||| ||||||||||||| || |||
Sbjct 245 CATGGGTTCTAATATCCAACTTCAAAG-TAGCCTACAATATCCTGCGTCGCCCCGATGGA 303
Query 285 ACTTTTAACCGTCATC-TCGCAGAGTTTCTAGACCGGAAAGTCCCTGCAAATGCCAACCC 343
|| |||||||| || | | || |||| ||||||||| |||||| ||||||| ||||| ||
Sbjct 304 ACCTTTAACCGACA-CTTAGCTGAGTATCTAGACCGTAAAGTCACTGCAAACGCCAATCC 362
Query 344 TGTTAATGGGGTCTTCTCTTTTGATGTGATCATCGATCGCCA-AACT-AAT-TTGCTTAG 400
||| ||||||| ||||| || ||||| | || ||||| | || | ||| || || ||
Sbjct 363 TGTGGATGGGGTGTTCTCGTTCGATGTCTTGATTGATCG-TAGAA-TCAATCTT-CTAAG 419
Query 401 CAGAGTTTACAGACCAGCTGATGC---T---G-GC-ACTTCACCAAGTATTACT-GATCT 451
||||| || ||||||||| |||| | | || || | || ||| || | |||||
Sbjct 420 TAGAGTCTATAGACCAGCTTATGCAGATCAAGAGCAAC--CTCCTAGTGTT-TTAGATCT 476
Query 452 AC-AGAATCCTGTTGATGGTGAAATAGTGCCTGTTAT-TGTCTTCTTTCATGGTGGAAGC 509
| |||| ||||||||||| || || || |||||||| | | ||||| ||||| || |||
Sbjct 477 -CGAGAAGCCTGTTGATGGCGACATTGTCCCTGTTATAT-TGTTCTTCCATGGAGGTAGC 534
Query 510 TTTGCACATTCTTCTGCAAACAGTGCTATTTATGATACTCTTTGTCGTAGGCTTGTTGGT 569
||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct 535 TTTGCTCATTCTTCTGCAAACAGTGCCATCTACGATACTCTTTGTCGCAGGCTTGTTGGT 594
Query 570 TTGTG-TGGTGCTGTTGTTGTCTCTGTGAATTATCGTCGTGCACCAGAGAATCGATACCC 628
||||| ||| |||||||||||||||||| ||||| |||||||| ||||||| ||||||
Sbjct 595 TTGTGCAAGTG-TGTTGTTGTCTCTGTGAACTATCGGCGTGCACCCGAGAATCCATACCC 653
Query 629 TTGTGCTTATGATGATGGATGGGCTG-TTTTGAAATGGGTCAACTCGAGTTCTTGGCTTA 687
|||||||||||||||||| ||| || | || || ||||| ||||| || |||||||||
Sbjct 654 TTGTGCTTATGATGATGGTTGGATTGCTCTT-AATTGGGTTAACTCAAGAGCTTGGCTTA 712
Query 688 GAA-GCAAGAAAGACTCAAAGGTTCGTATTTTCTTGGCGGGTGATAGCTCTGGG-GGTAA 745
|| |||||||||||||||||||| ||| ||| ||||||| |||||||| ||| |||||
Sbjct 713 -AATCCAAGAAAGACTCAAAGGTTCATATATTCCTGGCGGGGGATAGCTC-GGGAGGTAA 770
Query 746 CATTGTGCATAATGTCGCGGTAAGAGCGGTTGAGTCAAGG-ATCGATGTTTTGGGGAACA 804
||||| ||||||||| ||| ||| ||||| ||| || ||| |||||||||||||||||||
Sbjct 771 CATTGCGCATAATGTAGCGCTAAAAGCGGGTGAATC-AGGAATCGATGTTTTGGGGAACA 829
Query 805 TTTTGCTTAACCCTATGTTTGGAGGGACCGAAAGAACGGAATCTGAGAAACGTTTGGATG 864
|| |||| || ||||||||||| |||| || || ||||| ||||||||| |||||||||
Sbjct 830 TTCTGCTGAATCCTATGTTTGGTGGGAATGAGAGGACGGAGTCTGAGAAAAGTTTGGATG 889
Query 865 GGAAGTACTTTGTTACGGTTAGAGACCGAGATTGGTATTGGAGAGCGTTTCTTCCTGAGG 924
|||| |||||||| || ||||||||||| ||||||||||||| ||| ||||| |||||||
Sbjct 890 GGAAATACTTTGTGACAGTTAGAGACCGCGATTGGTATTGGAAAGCTTTTCTACCTGAGG 949
Query 925 GTGAAGACAGAGAGCATCCAGCGTGTAGCCCGTTTGGCCCGAGAAGC-AAGAGTC-TAGA 982
| ||||| ||||||||||||||||||| |||||| |||| || ||| || || | ||||
Sbjct 950 GAGAAGATAGAGAGCATCCAGCGTGTAATCCGTTTAGCCCAAG-AGCGAAAAG-CTTAGA 1007
Query 983 AGGGTTGAGTTTCCCCAAGAGTCTTGTCGTTGTAGCGGGTTTAGATTTGATTCAAGATTG 1042
||| ||||||||||||||||||||||| ||||| || ||||| |||||||||| ||||||
Sbjct 1008 AGGATTGAGTTTCCCCAAGAGTCTTGTGGTTGTCGCAGGTTTGGATTTGATTCGAGATTG 1067
Query 1043 GCAATTGAAGTACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTGAAGCTTCTTTACTT 1102
||| ||| ||||||||||||||||||||||||||||||||||| |||||| | | ||
Sbjct 1068 GCAGTTGGCTTACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTAAAGCTTATGCATTT 1127
Query 1103 GGAGCAAGCCACTATTGGCTTCTACTTATTGCCTAACAACAATCACTTCCATACCGTTAT 1162
||| |||| ||| |||| || ||| | |||||||| |||||||| ||||||| |||||
Sbjct 1128 AGAGAAAGCAACTGTTGGGTTTTACCTCTTGCCTAATAACAATCATTTCCATAATGTTAT 1187
Query 1163 GGATGAGATAGCTGCATTTGTAAACG 1188
||||||||| |||| ||||||||||
Sbjct 1188 GGATGAGATTTCTGCGTTTGTAAACG 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5