BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27350.1
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326968 jgi|Araly1|326968|fgenesh1_pm.C_scaffold_6002188 2283 0.0
Ahg894704 jgi|Araly1|894704|Al_scaffold_0006_2700 933 0.0
> Ahg326968 jgi|Araly1|326968|fgenesh1_pm.C_scaffold_6002188
Length=1425
Score = 2283 bits (1236), Expect = 0.0
Identities = 1363/1426 (96%), Gaps = 2/1426 (0%)
Strand=Plus/Plus
Query 292 ATGGTGATGGAGGAAGGAAGAAGCATAGAAGAAGGGCTTTTGCAGCTCAAGAACAAAAAC 351
|||||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGTGGTGGAAGAAGAAAGAAGCATAGAAGAAGGGCTTTTGCAGCTCAAGAACCAAAAC 60
Query 352 GACGATTCAGAGTGTCGTATTACTGCTTGTGTTATCCTTAGCACTTTTGTCGCCGTTTGT 411
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GACGATTCAGAGTGTCGTATTACTGCTTGTGTTATCTTTAGCACTTTTGTCGCCGTTTGT 120
Query 412 GGCTCCTTCTCTTTTGGTGTTGCTACTGGTTACACTTCAGGTGCTGAGACAGGAGTTATG 471
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 121 GGCTCCTTCTCTTTTGGTGTTGCTACTGGTTATACTTCAGGTGCTGAGACAGGAGTTGTG 180
Query 472 AAGGACTTGGATCTTTCTATCGCGCAATTTTCAGCTTTTGGCTCATTCGCCACTTTAGGA 531
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AAGGACTTAGATCTTTCTATCGCGCAATTTTCAGCGTTTGGCTCATTCGCCACTTTAGGA 240
Query 532 GCTGCAATTGGTGCACTGTTCTGCGGTAATCTGGCAATGGTCATTGGCAGAAGAGGGACA 591
||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct 241 GCTGCAATTGGTGCACTGTTCAGCGGTAAAATGGCCATGGTCATTGGCAGAAGAGGGACA 300
Query 592 ATGTGGGTCTCCGATTTCCTATGCATCACTGGTTGGCTCTCCATCGCTTTTGCTAAGGAA 651
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATGTGGGTCTCCGATATCCTATGCATCACTGGTTGGCTCTCCATCGCTTTCGCTAAGGAA 360
Query 652 GTAGTGTTGCTGAACTTCGGAAGAATCATTTCAGGGATAGGTTTCGGCTTGACGAGCTAT 711
|| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 361 GTGGTGTTGCTAAACTTCGGAAGAATTACTTCAGGGATAGGTTTCGGCTTGACGAGCTAT 420
Query 712 GTGGTACCTGTCTACATAGCAGAAATTACGCCAAAACATGTTCGTGGTACATTTACGTTT 771
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGGTACCTGTCTATATAGCAGAAATTACGCCAAAACATGTTCGTGGTACATTTACGTTT 480
Query 772 TCAAACCAGCTTCTTCAAAACGCTGGACTCGCCATGATTTATTTCTGTGGGAATTTCATC 831
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCAAACCAGCTTCTCCAAAACGCTGGACTCGCCATGATTTATTTTTGTGGGAATTTCATC 540
Query 832 ACTTGGAGGACGTTGGCTTTATTAGGTGCTTTACCATGCTTCATTCAAGTAATCGGTTTA 891
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATTGGAGGACGTTGGCTTTATTAGGTGCTTTACCATGCTTCATTCAAGTAATCGGTTTA 600
Query 892 TTCTTCGTGCCAGAGTCTCCAAGATGGCTGGCCAAAGTTGGCT-CCGATAAAGAACTAGA 950
|||||||| ||||||||||||||||||||||| |||||||| | | ||||||||||||||
Sbjct 601 TTCTTCGTACCAGAGTCTCCAAGATGGCTGGCAAAAGTTGG-TACAGATAAAGAACTAGA 659
Query 951 AAATTCACTGTTTCGGCTTAGAGGAAGAGATGCTGATATTTCACGTGAAGCCTCAGAAAT 1010
|||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 660 AAATTCACTGCTTCGGCTTAGAGGGAGAGATGCTGATATGTCACGTGAAGCCTCGGAAAT 719
Query 1011 TCAAGTAATGACCAAAATGGTGGAAAATGATTCAAAGTCGAGTTTTTCAGATTTGTTCCA 1070
|||||| ||||||||| |||| ||||||||||||||||||||| |||| |||||||| ||
Sbjct 720 TCAAGTTATGACCAAACTGGTAGAAAATGATTCAAAGTCGAGTATTTCTGATTTGTTTCA 779
Query 1071 GAGAAAGTATAGATACACCCTCGTGGTAGGAATCGGGCTAATGTTGATACAACAATTCTC 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGAAAGTATAGATACACCCTCGTGGTAGGAATCGGGCTAATGTTGATACAACAATTCTC 839
Query 1131 AGGAAGTGCTGCTGTAATCTCTTATGCAAGTACCATTTTTAGAAAAGCTGGTTTTTCGGT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 840 AGGAAGTGCTGCTGTAATCTCTTATGCAAGTACCATTTTTAGAAAAGCTGGTTTTCCAGT 899
Query 1191 GGCCATTGGAACGACGATGCTAGGTATCTTCGTGATTCCAAAAGCCATGATTGGCCTCAT 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 GGCCATTGGAACGACGATGCTAGGTATCTTCGTGATTCCAAAAGCCATGATTGGTCTCAT 959
Query 1251 TCTTGTCGATAAATGGGGCAGACGTCCTCTCCTGATGACTTCAGCGTTTGGGATGAGCAT 1310
|||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||
Sbjct 960 TCTTGTCGATAAATGGGGCAGACGACCTCTGTTGTTGACTTCTGCGTTTGGGATGAGCAT 1019
Query 1311 GACTTGCATGCTACTTGGGGTCGCCTTCACATTACAGAAAATGCAATTGCTTTCGGAACT 1370
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 GACTTGCATGCTTCTTGGGGTCGCCTTCACATTACAGAAAATGCAATTGCTTTCGGAAGT 1079
Query 1371 AACTCCAATATTATCGTTTATATGCGTAATGATGTATATTGCAACTTATGCAATAGGCTT 1430
||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1080 AACTCCAGTATTATCGTTTATATGCGTTATGCTGTATATTGCAACTTATGCAATAGGCTT 1139
Query 1431 GGGAGGTCTACCTTGGGTAATTATGTCGGAGATATTTCCAATAAATATAAAAGTAACTGC 1490
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 GGGAGGCCTCCCTTGGGTAATTATGTCGGAGATATTTCCAATAAATATAAAAGTAACCGC 1199
Query 1491 AGGAAGTATAGTTACGTTAGTCTCATTTTCAAGTAGTTCAATCGTCACTTACGCTTTCAA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGGAAGTATAGTTACGTTAGTCTCATTTTCAAGTAGTTCAATCGTCACTTACGCTTTCAA 1259
Query 1551 CTTTCTGTTCGAATGGAGCACTCAAGGAACGTTTTTCATATTCGCGGGTATCGGTGGAGC 1610
|||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||| |||||
Sbjct 1260 CTTTCTGTTCGAGTGGAGCACTCAAGGAACATTTTTTATATTCGGGGGTATCGGCGGAGC 1319
Query 1611 AGCGTTGCTTTTTATATGGTTGCTCGTTCCAGAAACGAAAGGATTATCACTCGAAGAAAT 1670
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1320 AGCGTTGCTTTTTATATGGTTGCTCGTTCCAGAAACGAAAGGATTGTCACTTGAAGAAAT 1379
Query 1671 ACAAGTTTCACTTATTCATCAGCCCGATGAAAGAAATCAAACTTAA 1716
||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1380 ACAAGTTTCACTTATTCATCAGCCCGACGAAAGAAATCAAACATAA 1425
> Ahg894704 jgi|Araly1|894704|Al_scaffold_0006_2700
Length=1392
Score = 933 bits (505), Expect = 0.0
Identities = 716/816 (88%), Gaps = 22/816 (3%)
Strand=Plus/Plus
Query 291 GATGGT-GATGGAGGAAGGAAGAAGCATAGAAGAAGGGCTTTTGCAGCTCAAGAACAAAA 349
|||||| || |||| ||| ||||||||| || ||| |||||||||||||||||||| |||
Sbjct 3 GATGGTGGA-GGAGAAAGAAAGAAGCATTGAGGAAAGGCTTTTGCAGCTCAAGAACCAAA 61
Query 350 ACGACGATTCAGAGTGTCGTATTACTGCTTGTGTTATCCTTAGCACTTTTGTCGCCGTTT 409
||||||||||||| |||||||| |||||||||||||||||| | ||||| ||||| || |
Sbjct 62 ACGACGATTCAGATTGTCGTATCACTGCTTGTGTTATCCTTGGTACTTTCGTCGCTGTGT 121
Query 410 GTGGCTCCTTCTCTTTTGGTGT-TGCTAC-TGGTTACACTTCAGGTGCTGAGACAGGAGT 467
||||||||||||| |||||||| | || | |||||| |||||||||||||||| |||| |
Sbjct 122 GTGGCTCCTTCTCCTTTGGTGTCT-CT-CTTGGTTATACTTCAGGTGCTGAGATAGGAAT 179
Query 468 TATGAAGGACTTGGATCTTTCTATCGCGCAATTTTCAGCTTTTGGC-TCATTCGCCACTT 526
|||||||||||||| |||| | ||||||||||||||||| || || |||||| ||||||
Sbjct 180 TATGAAGGACTTGGGTCTTACAATCGCGCAATTTTCAGC-ATTCGCTTCATTCTCCACTT 238
Query 527 TAGGAGCTGCAATTGGTGCACTGTTCT-GCGGTAATCTGGCAATGGTCATTGGCAGAAGA 585
| ||||||||||||||||| |||| | ||||||| |||| || || |||||||||||
Sbjct 239 TGGGAGCTGCAATTGGTGCTTTGTT-TAGCGGTAAAATGGCGATCATCCTTGGCAGAAGA 297
Query 586 GGGACAATGTGGGTCTCCGATTTCCTATGCATCACTGGTTGGCTCTCCATCGCTTTTGCT 645
|||||||||||||||||| |||| ||||||| ||||||| ||||||||||||| |||
Sbjct 298 AAAACAATGTGGGTCTCCGATCTCCTCTGCATCATTGGTTGGTTCTCCATCGCTTTCGCT 357
Query 646 AAGGAAGTAG-TGTTGCTGAACTTCGGAAGAATCAT-TTCAGGGATAGGTTTCGGCTTGA 703
||||| || | | | | ||||||||||||||||| | ||||| ||||| ||||| | |
Sbjct 358 AAGGATGT-GATCTGGTTGAACTTCGGAAGAATC-TCCTCAGGAATAGGACTCGGCCTAA 415
Query 704 CGAGCTATGTGGTACCTGTCTACATAGCAGAAATTACGCCAAAACATGTTCGTGGTACAT 763
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 416 TTAGCTATGTGGTACCTGTCTATATAGCAGAAATTTCCCCAAAACATGTTCGTGGTACAT 475
Query 764 TTACGTTTTCAAACCAGCTTCTTCAAAACGCTGGACTCGCCATGATTTATTTCT-GTGGG 822
|||| ||| |||| ||||||||||||||| |||||||||||||| ||||||| | | |||
Sbjct 476 TTACCTTTACAAATCAGCTTCTTCAAAACTCTGGACTCGCCATGGTTTATTTTTCG-GGG 534
Query 823 AA-TTTCATC-ACTTGGAGGACGTTGGCTTTATTAGGTGCTTTACCATGCTTCATTCAAG 880
|| |||| || || ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 535 AATTTTC-TCAAC-TGGAGGAAATTGGCTCTATTAGGTGCTTTACCATGCTTCATTCAAG 592
Query 881 TAATCGGTTTATTCTTCGTGCCAGAGTCTCCAAGATGGCTGGCCAAAGTTGGCTCC-GAT 939
||||||||||||||||||| |||||||| |||||||||||||| |||||||| | | |||
Sbjct 593 TAATCGGTTTATTCTTCGTACCAGAGTCCCCAAGATGGCTGGCAAAAGTTGG-TACAGAT 651
Query 940 AAAGAACTAGAAAATTCACTGTTTCGGCTTAGAGGAAGAGATGCTGATATTTCACGTGAA 999
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 652 AAAGAACTAGAAAATTCACTGCTTCGGCTTAGAGGGAGAGATGCTGATATTTCACGTGAA 711
Query 1000 GCCTCAGAAATTCAAGTAATGACCAAAATGGTGGAAAATGATTCAAAGTCGAGTTTTTCA 1059
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 712 GCCTCAGACATTCAAGTAATGACCAAAATAGTAGAAAATGATTCAAAGTCGAGTTTTTGT 771
Query 1060 GATTTGTTCCAGAGAAAGTATAGATACACCCTCGTG 1095
|||||||| ||||||||||||||||| || ||||||
Sbjct 772 GATTTGTTTCAGAGAAAGTATAGATATACTCTCGTG 807
Score = 643 bits (348), Expect = 0.0
Identities = 507/584 (87%), Gaps = 10/584 (2%)
Strand=Plus/Plus
Query 1129 TCAGGAAGTGCTGCTGTAATCTCTTATGCAAGTACCATTTTTAGAAAAGCTGGTTTTTCG 1188
||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 811 TCAGGAAGTTCTGCTGTACTCTCTTATGCAAGTACCATTTTAAGAAAAGCTGGTTTTTCG 870
Query 1189 GTGGCCATTGGAACGACGA-TGCTAGGTATCTTCGTGATTCCAAAAGCCATGATTGGCCT 1247
||| || ||||| |||| | ||||||| ||||| |||| ||||||||||||||||| |
Sbjct 871 GTGACCGTTGGATCGAC-ACTGCTAGGCCTCTTCATGATACCAAAAGCCATGATTGGTGT 929
Query 1248 CATTCTTGTCGATAAATGGGGCAGACGTCCTCTCCTGATGACTTCAGCGTTTGGGATGAG 1307
||||||||| ||||||||||||||||| |||||| || ||||||| | | ||||||| |
Sbjct 930 CATTCTTGTTGATAAATGGGGCAGACGGCCTCTCTTGTTGACTTCTGTATCTGGGATGTG 989
Query 1308 CATGACTTGCATGC-TACTTGGGGTCGCCTTCACATTACAGAAAATGCAATTGCTTTCG- 1365
|| |||| ||||| || |||| |||||||||||||||||||||||||||||||| |
Sbjct 990 TATAACTTCCATGCTTA-TTGGAGTCGCCTTCACATTACAGAAAATGCAATTGCTA-CAA 1047
Query 1366 GAACTAACTCCAATATT-ATCGTTTATATGCGTAATGATGTATATTGCAACTTATGCAAT 1424
|||||||||||| |||| | ||||||||||||| | | ||||||||| ||||| ||||||
Sbjct 1048 GAACTAACTCCAGTATTCA-CGTTTATATGCGTTACGCTGTATATTGGAACTTTTGCAAT 1106
Query 1425 AGGCTTGGGAGGTCTACCTTGGGTAATTATGTCGGAGATATTTCCAATAAATATAAAAGT 1484
|||| ||||||| || ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1107 AGGCATGGGAGGCCTTCCTTGGGTAATTATGTCCGAGATATTTCCAATGAATATAAAAGT 1166
Query 1485 AACTGCAGGAAGTATAGTTACGTTAGTCTCATTTTCAAGTAGTTCAATCGTCACTTACGC 1544
||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 1167 AACAGCAGGAAGTATAGTTACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTTACGC 1226
Query 1545 TTTCAACTTTCTGTTCGAATGGAGCACTCAAGGAACGTTTTTCATATTCGCGGGTATC-G 1603
||||||||||||| |||| ||||||||||||||||| |||| | |||| | ||| | | |
Sbjct 1227 TTTCAACTTTCTGCTCGAGTGGAGCACTCAAGGAACATTTTACGTATTTG-GGGCAACCG 1285
Query 1604 GTGGAGCAGCGTTGCTTTTTATATGGTTGCTCGTTCCAGAAACGAAAGGATTATCACTCG 1663
| |||| ||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct 1286 GAGGAGTAGCATTGCTTTTTATTTGGTTGCTCGTTCCGGAAACAAAAGGATTGTCACTTG 1345
Query 1664 AAGAAATACAAGTTTCACTTATTCATCAGCCCGATGAAAGAAAT 1707
|||||||||||| ||| ||||||| ||| || || | || ||||
Sbjct 1346 AAGAAATACAAGCTTCGCTTATTCGTCAACCTGACGGAATAAAT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895075300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5