BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27360.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326968 jgi|Araly1|326968|fgenesh1_pm.C_scaffold_6002188 1692 0.0
Ahg894704 jgi|Araly1|894704|Al_scaffold_0006_2700 1264 0.0
> Ahg326968 jgi|Araly1|326968|fgenesh1_pm.C_scaffold_6002188
Length=1425
Score = 1692 bits (916), Expect = 0.0
Identities = 1265/1433 (88%), Gaps = 26/1433 (2%)
Strand=Plus/Plus
Query 106 ATGGTGGTGG-AGAAAGAAAGAAGCATAGAAGAAAGGCTTTTGCAGCTCAAGAACCAAAA 164
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGTGGTGGAAG-AAGAAAGAAGCATAGAAGAAGGGCTTTTGCAGCTCAAGAACCAAAA 59
Query 165 CGACGATTCAGAATGTCGTATTACTGCTTGTGTTATCCTTAGTACTTTCATCGCTGTGTG 224
|||||||||||| |||||||||||||||||||||||| |||| ||||| |||| || ||
Sbjct 60 CGACGATTCAGAGTGTCGTATTACTGCTTGTGTTATCTTTAGCACTTTTGTCGCCGTTTG 119
Query 225 TGGTTCTTTCTCCTTTGGTGTCT-CT-CTTGGTTATACTTCAGGTGCAGAGATAGGAATT 282
||| || ||||| |||||||| | || | |||||||||||||||||| |||| |||| ||
Sbjct 120 TGGCTCCTTCTCTTTTGGTGT-TGCTAC-TGGTTATACTTCAGGTGCTGAGACAGGAGTT 177
Query 283 ATGAAGGACTTGGATCTTTCTATCGCGCAATTTTCAGCATTT-GCTTCATTATCCACTTT 341
|||||||||| |||||||||||||||||||||||||| ||| || ||||| |||||||
Sbjct 178 GTGAAGGACTTAGATCTTTCTATCGCGCAATTTTCAGCGTTTGGC-TCATTCGCCACTTT 236
Query 342 GGGAGCTGCAATTGGAGCTTTGTTTAGCGGTAAAATGGCGATCATCCTTGGCAGAAGAAA 401
|||||||||||||| || |||| |||||||||||||| || || |||||||||||
Sbjct 237 AGGAGCTGCAATTGGTGCACTGTTCAGCGGTAAAATGGCCATGGTCATTGGCAGAAGAGG 296
Query 402 AACAATGTGGGTGTCCGATCTCCTCTGTATCATTGGTTGGTTCTCCATCGCTTTCGCTAA 461
||||||||||| |||||| |||| || |||| ||||||| |||||||||||||||||||
Sbjct 297 GACAATGTGGGTCTCCGATATCCTATGCATCACTGGTTGGCTCTCCATCGCTTTCGCTAA 356
Query 462 GGATGTGATGTGGTTGAACTTCGGAAGAATCT-CCTCAGGGATAGGACTCGGCTTAATTA 520
||| ||| ||| | | |||||||||||||| | | ||||||||||| ||||||| | |
Sbjct 357 GGAAGTGGTGTTGCTAAACTTCGGAAGAAT-TACTTCAGGGATAGGTTTCGGCTTGACGA 415
Query 521 GCTATGTGGTACCTGTCTATATAGCAGAAATTTCACCAAAACATGTTCGTGGTACATTTA 580
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 416 GCTATGTGGTACCTGTCTATATAGCAGAAATTACGCCAAAACATGTTCGTGGTACATTTA 475
Query 581 CCTTTACAAATCAGCTCCTTCAAAACTCTGGACTCGCAATGGTTTATTTTTCTGGGAATT 640
| ||| |||| ||||| || |||||| |||||||||| ||| ||||||||| |||||| |
Sbjct 476 CGTTTTCAAACCAGCTTCTCCAAAACGCTGGACTCGCCATGATTTATTTTTGTGGGAA-T 534
Query 641 TTC-TCAACTGGAGGATATTGGCTTTATTAGGTGCTTTACCATGCTTCATTCAAGTAATC 699
||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTCATCAATTGGAGGACGTTGGCTTTATTAGGTGCTTTACCATGCTTCATTCAAGTAATC 594
Query 700 GGTTTATTCTTCGTACCAGAGTCCCCAAGATGGCTGGCAAAAGTTGGCTCC-GATAAAGA 758
||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||
Sbjct 595 GGTTTATTCTTCGTACCAGAGTCTCCAAGATGGCTGGCAAAAGTTGG-TACAGATAAAGA 653
Query 759 ACTAGAAAATTCACTTCTTCGTCTTAgggggggAAATGCTGATATTTCACGTGAAGCCTC 818
||||||||||||||| ||||| ||||| ||| || |||||||||| ||||||||||||||
Sbjct 654 ACTAGAAAATTCACTGCTTCGGCTTAGAGGGAGAGATGCTGATATGTCACGTGAAGCCTC 713
Query 819 AGACATTGAAGTTATGACCAAAATGGTAGAAAATGATTCAAAGTCGAGTTTTTGTGATTT 878
|| ||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 714 GGAAATTCAAGTTATGACCAAACTGGTAGAAAATGATTCAAAGTCGAGTATTTCTGATTT 773
Query 879 GTTCCAGAGAAAATATAGATACACTCTCGTGGTAGGAATCGGGCTAATGTTGATACAACA 938
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 774 GTTTCAGAGAAAGTATAGATACACCCTCGTGGTAGGAATCGGGCTAATGTTGATACAACA 833
Query 939 ATTTTCAGGAAGTTCTGCAGTGCTCTCATATGCCAGTACCATTTT-ACGGAAAGCAGGTT 997
||| ||||||||| |||| || |||| ||||| ||||||||||| | | ||||| ||||
Sbjct 834 ATTCTCAGGAAGTGCTGCTGTAATCTCTTATGCAAGTACCATTTTTA-GAAAAGCTGGTT 892
Query 998 TTTCGGTGACCATTGGATCGACGCTACTAGGTCTCTTCATGATACCAAAAGCCATGATTG 1057
|| | ||| |||||||| ||||| | |||||| ||||| |||| ||||||||||||||||
Sbjct 893 TTCCAGTGGCCATTGGAACGACGATGCTAGGTATCTTCGTGATTCCAAAAGCCATGATTG 952
Query 1058 GTGTCATTCTTGTCGATAAATGGGGCAGACGGCCTCTCTTGTTGACTTCTGTATCTGGGA 1117
|| |||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||
Sbjct 953 GTCTCATTCTTGTCGATAAATGGGGCAGACGACCTCTGTTGTTGACTTCTGCGTTTGGGA 1012
Query 1118 TGTGCATAACTTCCATGCTTATTGGAGTCGCCTTCACATTACAGAAAATGCAATTGCTAC 1177
|| |||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1013 TGAGCATGACTTGCATGCTTCTTGGGGTCGCCTTCACATTACAGAAAATGCAATTGCTTT 1072
Query 1178 CGGA-GCTAACACCAGTATTCA-CGTTTATATGCGTTACGCTGTATATTGGAACTTATGC 1235
|||| | |||| |||||||| | ||||||||||||||| ||||||||||| |||||||||
Sbjct 1073 CGGAAG-TAACTCCAGTATT-ATCGTTTATATGCGTTATGCTGTATATTGCAACTTATGC 1130
Query 1236 TATAGGCTTGGGAGGCCTTCCTTGGGTAATTATGTCTGAGATATTTCCAATGAATATAAA 1295
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1131 AATAGGCTTGGGAGGCCTCCCTTGGGTAATTATGTCGGAGATATTTCCAATAAATATAAA 1190
Query 1296 AGTAACTGCAGGAAGTATAGTAACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTTA 1355
|||||| |||||||||||||| |||||||| |||| ||||||||||| |||||||||||
Sbjct 1191 AGTAACCGCAGGAAGTATAGTTACGTTAGTCTCATTTTCAAGTAGTTCAATCGTCACTTA 1250
Query 1356 TGCTTTCAACTTTCTGCTCGAGTGGAGCACTCAAGGAACATTTTACGTATTTGGAGC-AG 1414
||||||||||||||| ||||||||||||||||||||||||||| |||| || | |
Sbjct 1251 CGCTTTCAACTTTCTGTTCGAGTGGAGCACTCAAGGAACATTTTTTATATTCGGGGGTA- 1309
Query 1415 TCGGAGGA-CTAGCATTGCTTTTTATTTGGTTGCTCGTTCCGGAAACGAAAGGATTATCA 1473
|||| ||| | ||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1310 TCGGCGGAGC-AGCGTTGCTTTTTATATGGTTGCTCGTTCCAGAAACGAAAGGATTGTCA 1368
Query 1474 CTTGAAGAAATACAAGCTTCGCTTATTCGTGAGCCCGATAGAAT-AAATCAAA 1525
|||||||||||||||| ||| ||||||| | ||||||| ||| ||||||||
Sbjct 1369 CTTGAAGAAATACAAGTTTCACTTATTCATCAGCCCGAC-GAAAGAAATCAAA 1420
> Ahg894704 jgi|Araly1|894704|Al_scaffold_0006_2700
Length=1392
Score = 1264 bits (684), Expect = 0.0
Identities = 767/808 (95%), Gaps = 2/808 (0%)
Strand=Plus/Plus
Query 103 ATGATGGTGGTGGAGAAAGAAAGAAGCATAGAAGAAAGGCTTTTGCAGCTCAAGAACCAA 162
|||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGATGGTGGAGGAGAAAGAAAGAAGCATTGAGGAAAGGCTTTTGCAGCTCAAGAACCAA 60
Query 163 AACGACGATTCAGAATGTCGTATTACTGCTTGTGTTATCCTTAGTACTTTCATCGCTGTG 222
|||||||||||||| |||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 61 AACGACGATTCAGATTGTCGTATCACTGCTTGTGTTATCCTTGGTACTTTCGTCGCTGTG 120
Query 223 TGTGGTTCTTTCTCCTTTGGTGTCTCTCTTGGTTATACTTCAGGTGCAGAGATAGGAATT 282
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TGTGGCTCCTTCTCCTTTGGTGTCTCTCTTGGTTATACTTCAGGTGCTGAGATAGGAATT 180
Query 283 ATGAAGGACTTGGATCTTTCTATCGCGCAATTTTCAGCATTTGCTTCATTATCCACTTTG 342
||||||||||||| |||| | |||||||||||||||||||| |||||||| |||||||||
Sbjct 181 ATGAAGGACTTGGGTCTTACAATCGCGCAATTTTCAGCATTCGCTTCATTCTCCACTTTG 240
Query 343 GGAGCTGCAATTGGAGCTTTGTTTAGCGGTAAAATGGCGATCATCCTTGGCAGAAGAAAA 402
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGCTGCAATTGGTGCTTTGTTTAGCGGTAAAATGGCGATCATCCTTGGCAGAAGAAAA 300
Query 403 ACAATGTGGGTGTCCGATCTCCTCTGTATCATTGGTTGGTTCTCCATCGCTTTCGCTAAG 462
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 ACAATGTGGGTCTCCGATCTCCTCTGCATCATTGGTTGGTTCTCCATCGCTTTCGCTAAG 360
Query 463 GATGTGATGTGGTTGAACTTCGGAAGAATCTCCTCAGGGATAGGACTCGGCTTAATTAGC 522
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 361 GATGTGATCTGGTTGAACTTCGGAAGAATCTCCTCAGGAATAGGACTCGGCCTAATTAGC 420
Query 523 TATGTGGTACCTGTCTATATAGCAGAAATTTCACCAAAACATGTTCGTGGTACATTTACC 582
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 TATGTGGTACCTGTCTATATAGCAGAAATTTCCCCAAAACATGTTCGTGGTACATTTACC 480
Query 583 TTTACAAATCAGCTCCTTCAAAACTCTGGACTCGCAATGGTTTATTTTTCTGGGAATTTT 642
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 481 TTTACAAATCAGCTTCTTCAAAACTCTGGACTCGCCATGGTTTATTTTTCGGGGAATTTT 540
Query 643 CTCAACTGGAGGATATTGGCTTTATTAGGTGCTTTACCATGCTTCATTCAAGTAATCGGT 702
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCAACTGGAGGAAATTGGCTCTATTAGGTGCTTTACCATGCTTCATTCAAGTAATCGGT 600
Query 703 TTATTCTTCGTACCAGAGTCCCCAAGATGGCTGGCAAAAGTTGGCTCC-GATAAAGAACT 761
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 601 TTATTCTTCGTACCAGAGTCCCCAAGATGGCTGGCAAAAGTTGG-TACAGATAAAGAACT 659
Query 762 AGAAAATTCACTTCTTCGTCTTAgggggggAAATGCTGATATTTCACGTGAAGCCTCAGA 821
|||||||||||| ||||| ||||| ||| || ||||||||||||||||||||||||||||
Sbjct 660 AGAAAATTCACTGCTTCGGCTTAGAGGGAGAGATGCTGATATTTCACGTGAAGCCTCAGA 719
Query 822 CATTGAAGTTATGACCAAAATGGTAGAAAATGATTCAAAGTCGAGTTTTTGTGATTTGTT 881
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 CATTCAAGTAATGACCAAAATAGTAGAAAATGATTCAAAGTCGAGTTTTTGTGATTTGTT 779
Query 882 CCAGAGAAAATATAGATACACTCTCGTG 909
|||||||| |||||||| |||||||||
Sbjct 780 TCAGAGAAAGTATAGATATACTCTCGTG 807
Score = 881 bits (477), Expect = 0.0
Identities = 547/582 (94%), Gaps = 0/582 (0%)
Strand=Plus/Plus
Query 940 TTTTCAGGAAGTTCTGCAGTGCTCTCATATGCCAGTACCATTTTACGGAAAGCAGGTTTT 999
||||||||||||||||| || ||||| ||||| |||||||||||| | ||||| ||||||
Sbjct 808 TTTTCAGGAAGTTCTGCTGTACTCTCTTATGCAAGTACCATTTTAAGAAAAGCTGGTTTT 867
Query 1000 TCGGTGACCATTGGATCGACGCTACTAGGTCTCTTCATGATACCAAAAGCCATGATTGGT 1059
||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 868 TCGGTGACCGTTGGATCGACACTGCTAGGCCTCTTCATGATACCAAAAGCCATGATTGGT 927
Query 1060 GTCATTCTTGTCGATAAATGGGGCAGACGGCCTCTCTTGTTGACTTCTGTATCTGGGATG 1119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GTCATTCTTGTTGATAAATGGGGCAGACGGCCTCTCTTGTTGACTTCTGTATCTGGGATG 987
Query 1120 TGCATAACTTCCATGCTTATTGGAGTCGCCTTCACATTACAGAAAATGCAATTGCTACCG 1179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TGTATAACTTCCATGCTTATTGGAGTCGCCTTCACATTACAGAAAATGCAATTGCTACAA 1047
Query 1180 GAGCTAACACCAGTATTCACGTTTATATGCGTTACGCTGTATATTGGAACTTATGCTATA 1239
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1048 GAACTAACTCCAGTATTCACGTTTATATGCGTTACGCTGTATATTGGAACTTTTGCAATA 1107
Query 1240 GGCTTGGGAGGCCTTCCTTGGGTAATTATGTCTGAGATATTTCCAATGAATATAAAAGTA 1299
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1108 GGCATGGGAGGCCTTCCTTGGGTAATTATGTCCGAGATATTTCCAATGAATATAAAAGTA 1167
Query 1300 ACTGCAGGAAGTATAGTAACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTTATGCT 1359
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1168 ACAGCAGGAAGTATAGTTACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTTACGCT 1227
Query 1360 TTCAACTTTCTGCTCGAGTGGAGCACTCAAGGAACATTTTACGTATTTGGAGCAGTCGGA 1419
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1228 TTCAACTTTCTGCTCGAGTGGAGCACTCAAGGAACATTTTACGTATTTGGGGCAACCGGA 1287
Query 1420 GGACTAGCATTGCTTTTTATTTGGTTGCTCGTTCCGGAAACGAAAGGATTATCACTTGAA 1479
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1288 GGAGTAGCATTGCTTTTTATTTGGTTGCTCGTTCCGGAAACAAAAGGATTGTCACTTGAA 1347
Query 1480 GAAATACAAGCTTCGCTTATTCGTGAGCCCGATAGAATAAAT 1521
|||||||||||||||||||||||| | || || ||||||||
Sbjct 1348 GAAATACAAGCTTCGCTTATTCGTCAACCTGACGGAATAAAT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5