BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27370.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942361 jgi|Araly1|942361|scaffold_602905.1 832 0.0
> Ahg942361 jgi|Araly1|942361|scaffold_602905.1
Length=619
Score = 832 bits (450), Expect = 0.0
Identities = 537/579 (93%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCGTCGTTCATTAGATCGCTACCGTCTGCCGGAAACTTCGCCAACCTATTGCCG 60
||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||
Sbjct 22 ATGGAGGCGTCGTTCATTAGATCTCTACCCTCCGCCGGAAACTTCGCCAACCTCTTGCCG 81
Query 61 ACCGGGACCGCCCTCATATTCGAAACCCTACTACCGTCTTTCTCCAATGGCGGCGAGTGC 120
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 82 ACCGGAACCGCCCTCATATTCGAAACCCTACTACCGTCTTTCTCAAATGGCGGCGAGTGC 141
Query 121 AACAACAAACCCGTCAATAAACTCCTCACCATTACTCTCATCTCCTTTTGCGCCGCGGCT 180
||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 142 AACAATAAACCCGCCAATAAACTCCTCACCATTTCCCTCATCTCCTTTTGCGCCGCGGCT 201
Query 181 TGCTTCTTCTCCTCCTTCACCGACTCATATGTAGGCCAAGATGGCCGCATTTACTACGGA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TGCTTCTTCTCCTCATTCACCGACTCATATGTAGGCCAAGATGGCCGCATTTACTACGGA 261
Query 241 ATTGCCACCTCTAACGGTCTCCACATCCTCAACGACTATCC-AGACGAAGGTTATGATCC 299
||||||||||| ||||||||| ||||||||||||||||||| | | || |||||||||||
Sbjct 262 ATTGCCACCTCGAACGGTCTCTACATCCTCAACGACTATCCCA-AGGACGGTTATGATCC 320
Query 300 AGAGTCCGGCTTAACGGCTGATAAGAGAGAG-AGATATAAGCTCAGTTTTGTAGATTTCG 358
|| ||||||||||||||||| |||| | || ||||| ||||| |||||||| |||||||
Sbjct 321 GGAATCCGGCTTAACGGCTGACAAGAAA-AGGAGATACAAGCTGAGTTTTGTGGATTTCG 379
Query 359 TGCATGCTTTCGTGTCGGTTATCGTGTTCTTAGCGTTAGCCGTAGAGAGCTCGGATTTTC 418
|||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||
Sbjct 380 TGCATGCTTTCGTGTCAGTGGTCGTGTTCTTGGCGTTAGCCGTAGAGAGTTCGGATTTTC 439
Query 419 GGAGGTGTTTGCTCCCGGAGGACGATGAAAACAGTTGGGGTGGTCATTTTGTACTTATGA 478
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||
Sbjct 440 GGAGGTGTTTGCTCCCGGAGGGCGATGAAAACAGTTGGGGTGGTCATTTCGTACTTTTGA 499
Query 479 TCAAGTACTTTGCTGTTATGGTGTTGACAATGGCAAGCTTCTTCTTTGCTATCTTTCCCT 538
| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 500 TTAAGTATTTTGCGGTTATGGTGTTGACAATGGCGAGCTTCTTCTTTGCTATCTTTCCCT 559
Query 539 CAAAACGGAGAGGCATCGGA-ATTTCAGACATTCGTTGA 576
|||||||||||||||||||| || | ||||||||||||
Sbjct 560 CAAAACGGAGAGGCATCGGATATA-CGGACATTCGTTGA 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21061885128
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5