BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27380.1
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489590 jgi|Araly1|489590|fgenesh2_kg.6__2724__AT5G27380.1 2601 0.0
> Ahg489590 jgi|Araly1|489590|fgenesh2_kg.6__2724__AT5G27380.1
Length=1874
Score = 2601 bits (1408), Expect = 0.0
Identities = 1708/1850 (92%), Gaps = 32/1850 (2%)
Strand=Plus/Plus
Query 54 GGCAGTGGCTGCTCTTCTCTCTCTTACTCATCATCTTCCACTTGCAATGCCACTGTTTTC 113
||||||| ||||||||||| |||||||| || |||||||||||| |||| || ||||
Sbjct 49 GGCAGTGTCTGCTCTTCTCCCTCTTACTTTTCTTCTTCCACTTGCTTTGCCTCTCATTTC 108
Query 114 TCTATTTCTTCTTCTCCATCATCTTCTTCTTCGCTGAAACTCAATCCAAGTA-GCTTCCT 172
|||| | ||||||||| | || |||||||||||||||||||||||||| | |||||||
Sbjct 109 TCTA--T-TTCTTCTCC-T--TCATCTTCTTCGCTGAAACTCAATCCAAG-ACGCTTCCT 161
Query 173 TTTCCAGAACCCTA-AAACTCTGAGAAATCAGTCACCTTTGAGGTGTGGGAGATCATTTA 231
|||||| ||||||| ||| ||||||||| ||| |||||||||||||||||||||| |
Sbjct 162 TTTCCATAACCCTAGAAA-TCTGAGAAAGCAGGCACCTTTGAGGTGTGGGAGATCCCTGG 220
Query 232 AGATGGAATCACAGAAACCCATTTTCGATTTGGAGAAATTAGATGATGAGTTTGTTCAGA 291
||||||||||| ||||||||||||||||| |||| | || |||||||| ||||||||||
Sbjct 221 AGATGGAATCAAAGAAACCCATTTTCGATGTGGACACGTTTGATGATGATTTTGTTCAGA 280
Query 292 AACTGGTTTACGATGCTCTCGTTTGGTCTTCTCTTCACGGACTCGTCGTTGGTGACAAAA 351
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 281 AACTGGTTTATGATGCTCTCGTTTGGTCTTCTCTTCACGGACTCGTCGTCGGTGACAAAA 340
Query 352 GTTATCAGAAATCAGGAAATGTTCCAGGGGTTGGATTGATGCACGCACCTATTGCATTGC 411
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 341 CTTACCAGAAATCAGGAAATGTTCCAGGGGTTGGATTGATGCACGCACCGATTGCATTGC 400
Query 412 TACCAACTGCATTCCCAGAAGCTTATTGGAAGCAAGCTTGTAATGTTACTCCTCTTTTCA 471
|||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct 401 TACCAACTTCATTCCCTGAAATTTATTGGAAGCAAGCTTGTGATGTTACTCCTATTTTCA 460
Query 472 ATGAATTGATTGATCGTGTTAGCTTGGATGGCAAATTCTTACAGGATAGTCTCTCTAGAA 531
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 461 ATGAATTGATTGATCGTGTTAGCTTGGATGGGAAGTTCTTACAGGATAGTCTCTCTAGAA 520
Query 532 CGAAGAAAGTTGATGTCTTTACATCTAGACTTCTTGACATTCACTCCAAGATGCTAGAAA 591
|||| |||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 521 CGAAAAAAGCTGACGTCTTTACATCTAGACTTCTCGACATTCACTCCAAGATGCTTGAAA 580
Query 592 GAAATAAGAAAGAGGACATTCGTTTGGGTTTACACCGGTTTGATTATATGCTTGACGAAG 651
|||| ||||||||||| |||||| ||||||| || |||||||||||||||||||||||||
Sbjct 581 GAAACAAGAAAGAGGATATTCGTCTGGGTTTGCAGCGGTTTGATTATATGCTTGACGAAG 640
Query 652 AAACAAATTCACTTCTTCAGATTGAGATGAATACTATCTCGTGTTCGTTTCCTGGCCTTA 711
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 641 AAACAAATTCACTTCTTCAGATTGAGATGAACACTATCTCTTGTTCGTTTCCAGGCCTTA 700
Query 712 GTCGTCTTGTTAGCCAGCTACATCAGTCATTGCTTCGATCTTATGGGGATCAGATTGGCA 771
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 701 GTCGTCTTGTTAGCCAGCTACACCAGTCATTGCTTCGATCTTATGGGGATCAGATTGGCA 760
Query 772 TAGACTCTGAACGTGTACCTATAAACACATCCACAATCCAATTTGCTGATGCATTGGCTA 831
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||
Sbjct 761 TAGACTCTGAACGTGTACCTAGAAATACATCCACAATCCAATTTGCTGATGCAATAGCTA 820
Query 832 AAGCTTGGTTGGAGTACAGTAACCCAAGAGCGGTAGTCATGGTAATTGTACAGCCAGAAG 891
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 821 AAGCTTGGTTGGAGTACAATAACCCAAGAGCGGTTGTCATGGTAATTGTACAGCCAGAAG 880
Query 892 AACGCAACATGTACGATCAACATTTGCTGAGCAGTATATTGAGAGAAAAGCATAATATAG 951
||||||||||||| |||||||||||||||||| | | || | | ||| |||||||
Sbjct 881 AACGCAACATGTATGATCAACATTTGCTGAGC-----A--G-GA-ACACGCACAATATAG 931
Query 952 TTGTCATCAGGAAGACTCTAGCAGAAGTCGAAAAAGAAGGGAGTGTACAAGAGGATGAAA 1011
| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 932 TAGCCATCAGGAAGACTCTAGCAGAAGTCGAAACTGAAGGGAGTGTACAAGAGGATGGAA 991
Query 1012 CCCTTATTGTTGGCGGCCAAGCAGTCGCAGTGGTTTATTTCAGATCTGGCTATACTCCTA 1071
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 992 CCCTTATTGTTGGCGGCCAAGCGGTCGCGGTGGTTTATTTCAGATCTGGCTATACTCCCA 1051
Query 1072 ATGATCATCCGTCTGAATCAGAATGGAATGCTAGGCTGCTTATTGAGGAGTCTTCAGCTG 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1052 ATGATCATCCGTCTGAATCAGAATGGAATGCTAGGCTGCTTATTGAGGAGTCTTCAGCGG 1111
Query 1132 TCAAATGCCCGAGCATAGCTTACCATTTAACTGGCTCCAAGAAAATCCAGCAAGAACTGG 1191
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1112 TCAAATGCCCGAGTATAGCTTACCATTTAACTGGCAGCAAGAAAATCCAGCAAGAACTGG 1171
Query 1192 CTAAACCAGGTGTTCTCGAGAGGTTTCTGGACAACAAAGAGGACATTGCTAAGCTGAGGA 1251
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1172 CAAAACCAGGTGTTCTCGAGAGGTTTCTGGACAACAAAGAGGACATTGCTAAGATGAGGA 1231
Query 1252 AATGCTTTGCTGGGCTTTGGAGCTTGGATGACTCAGAAATTGTCAAGCAGGCTATCGAAA 1311
|||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1232 AATGCTTTGCGGGGCTTTGGAGCTTGGATGACCCAGAAATCGTCAAGCAGGCAATCGAAA 1291
Query 1312 AACCCGGATTGTTTGTTATGAAGCCTCAGAGAGAAGGCGGAGGAAACAACATCTATGGAG 1371
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AACCCGGATTGTTCGTTATGAAGCCTCAGAGAGAAGGCGGAGGAAACAACATCTATGGAG 1351
Query 1372 ATGATGTGAGGGAAAATCTTTTGAGACTGCAGAAAGAAGGAGAGGAAGGAAACGCTGCGT 1431
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1352 ATGATGTGAGGGAAAATCTTTTGAGACTGCAGAAAGAAGGAAAGGACGGAAACGCTGCGT 1411
Query 1432 ATATCCTGATGCAGAGGATATTCCCAAAAGTCTCAAACATGTTCTTGGTGCGAGAAGGCG 1491
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1412 ATATCCTGATGCAGAGGATATTCCCAAAGGTCTCAAACATGTTCTTGGTGCGAGAAGGCG 1471
Query 1492 TTTACCATAAGCATCAAGCTATATCAGAACTCGGTGTCTATGGTGCTTACCTCAGGAGCA 1551
|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1472 TTTACCATAAAAATCAAGTTATATCAGAACTTGGTGTCTATGGTGCTTACCTCAGGAACA 1531
Query 1552 AAGACGAA-GTTATAGTAAACGAGCAGAGTGGTTATCTAATGCGCACGAAGATCGCA-TC 1609
||||| || |||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1532 AAGAC-AACGTTATAGTTAACGAGCAGAGTGGTTATCTAATGCGCACAAAGATCG-AGTC 1589
Query 1610 ATCAGATGAAGGCGGCGTTGCAGCTGGTTTTGGAGTCTTGGACAGCATATATCTGATTTG 1669
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1590 ATCAGATGAAGGCGGCGTTGCAGCTGGTTTTGGAGTCTTGGACAGCATTTATCTGAATTG 1649
Query 1670 AGATGGATAACATTCACAACCATCTTGATCAGTTTTTCTTCTGGTTTATTCCTTCTTCTT 1729
||||| || |||| |||||||||| |||||| | ||||| |||||| |||||| || ||
Sbjct 1650 AGATGAATCACATGCACAACCATCCTGATCAATCTTTCTGCTGGTTCGTTCCTTTTTGTT 1709
Query 1730 CT-CTTCTTGCTTGTTAAAGATTTGTGTATTAAT-CATGAAGATCAATAAGACT--AGGC 1785
|| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1710 CTTCTTCTTGCTTGTTAAAGATTTGTGTATTAATTCATGAAGGTCAATAAGACTCTAGGC 1769
Query 1786 AAAGCTCTTTACAATTCTTTCCACAGGACCGCAAAGCCTACATTGCTTATTGTTATTTTT 1845
||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1770 AAAGCTCTT-ACAATTCTTTCCATAGGACCGCAAAGCATACATTGCTTATTGTTATTTT- 1827
Query 1846 AGACCGTGTGAGATGATTACTCGTTTATAAAGATCATGAATTGAATAAGA 1895
||||||||||||| ||| ||||||||| | |||||||||| ||||||||
Sbjct 1828 AGACCGTGTGAGACGATCACTCGTTTA-A--GATCATGAATGGAATAAGA 1874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71762021580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5