BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27390.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942358 jgi|Araly1|942358|scaffold_602902.1 1188 0.0
> Ahg942358 jgi|Araly1|942358|scaffold_602902.1
Length=770
Score = 1188 bits (643), Expect = 0.0
Identities = 728/769 (95%), Gaps = 5/769 (1%)
Strand=Plus/Plus
Query 50 tcttcttcttcttcctcttctcatggccattctacttcactccctctctcttcATCCACC 109
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2 TCTTCTTCTTCTTCCTCTTCTCATGGCCATTCTACTTCACTCTCTCTCTCTTCATCCACC 61
Query 110 AAACCCTAAACCTCAAAACCCTTATAAACCCAAAATTCTCTCTTCTTCTGCTACCTTTCG 169
|||||||||||||| ||||||| |||||||||||||| ||||| ||| ||| || |||||
Sbjct 62 AAACCCTAAACCTCCAAACCCTAATAAACCCAAAATTGTCTCTCCTTTTGCAACTTTTCG 121
Query 170 GAGAGATGTGGTGCTTAGAACAGCATCACTCTGTTTCGTCTCCTTCATCTTTCAAAACCA 229
||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 122 GAGAGATGTGGTGCTTAGAACAGCATCTCTCTGTTTCGTCTCTTTCATCATTCAAAACCC 181
Query 230 AATTCCA-GAGTCATTAGCTGATCCTTTGAAGTCTACCAAACCGTTACGACTCGGCATTG 288
|||| || |||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct 182 AATT-CATGAGTCAATAGCCGATCCTTTGAAGTCTTCCAAACCGCTAAGACTCGGCATTG 240
Query 289 CGAACACTAAGTCTTGGTTCCAGTACTTTGGTAG-TGGGTTCGCTATTAGGGTTCCTCCT 347
| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 241 CCAACACTAAGTCTTGGTTCCAGTTCTTTGGT-GATGGGTTCGCTATTAGGGTTCCTCCT 299
Query 348 GACTTTGAAGACGTCAATGAGCCTGAGGATTACTCTGCGGGATTGTCTCTCTATGGTGAC 407
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 300 GACTTTGAAGACGTCAATGAGCCTGAGGATTACTCTGCGGGATTGTCACTCTATGGGGAC 359
Query 408 AAGGCAAAGCCACAAACTTTCGCCGCCCGGTTCCAAACTCCTGATGGATCAGAAGTTTTG 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGGCAAAGCCGCAAACTTTCGCCGCCCGGTTCCAAACTCCTGATGGATCAGAAGTTTTG 419
Query 468 AGTGTAGTCATTCGTCCTTCAAATCAACTTAAGATCACTTTCTTAGAGGCTAAAGATATA 527
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCGTAGTCATTCGCCCTTCAAATCAACTTAAGATCACTTTCTTAGAGGCTAAAGATATA 479
Query 528 TCTGATTTGGGATCATTGAAGGCAGCTGCAAGACTTTTTGTTCCAGGTGCGGCAACAATT 587
|| |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||
Sbjct 480 TCCGATTTGGGATCATTAAAGGCAGCTGCAAGACTCTTTGTTCCAGGTGCCGCGACTATT 539
Query 588 TACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGAAATTACTACTTCTAC 647
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 TACTCTGCTCGTACAATCAAGGTAAAGGAGGAAGAAGGTTTAAGAAATTACTACTTCTAC 599
Query 648 GAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGGTT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGGTT 659
Query 708 TATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAGTTGAAGCTCCGA 767
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 660 TATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAGTTAAAGCTTCGA 719
Query 768 TCTGCTGCCATTTCTTTCACTATTCTATAGTC-AAAAGGCAGCTTCTTC 815
|||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 720 TCTGCTGCCATTTCTTTCACAATCCTATAATCGAAAAGGCAGCTTCTTC 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5