BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27395.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942359 jgi|Araly1|942359|scaffold_602903.1 1550 0.0
> Ahg942359 jgi|Araly1|942359|scaffold_602903.1
Length=985
Score = 1550 bits (839), Expect = 0.0
Identities = 938/986 (95%), Gaps = 5/986 (1%)
Strand=Plus/Plus
Query 152 TTTCTTCAC-CCAGATAAAAAATGTCGCTCGTGAGAAGATTTCAAACAGTTCGTTCTTTA 210
||||||||| | | || ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 TTTCTTCACACTA-ATCAAAAATGGCGCTCGTAAGAAGATTTCAAACAGTTCGTTCTTTG 59
Query 211 TTGAAAACAGCTGGATCAAGAGAATCTTCTTCTCTTCCATTTAGGAATGGAAATGAGTTC 270
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 60 TTGAAAACAGCTGGATCAAGAGAATCTTCTTCTCTTCCATTTCGGAGTGGAAATGAGTCC 119
Query 271 TCTTTGATTCAAATTGGAGATGATTTCAGATTTGGTTGTTGGAGAAGCTATCATTCTTCT 330
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 TCTTTGATTCAAATTGGAGATGATTTCAGATTTGGGTGTTGGAGAAGCTATCATTCTTCT 179
Query 331 CTTTGTCACGTTCCTGAAGCTCATGGAAAAAGTGCGTATTCACGTTTATATGAAGG-C-C 388
|||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| | |
Sbjct 180 CTTTGTCAGGTTCCTGAAGCTCATGGAAAAAGTGTGTATTCACGTTTATATCAAGGCCAC 239
Query 389 -ACAGCGTCAATACACATTTGCTTCGATCTACAATGATTGCAGAGTTTTTGCCGTTTATG 447
||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 240 AACAACGCCAACACACATTTGCTTCGATCTACAATGATTGCAGAGTCTTTGCCGTTTACG 299
Query 448 AATGAAAAAAGGTCTGCTACAACGCAAGTTAAGGCTCCACCTCAGCTACAGAAAACGGGT 507
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 300 AACGAAAAAAGGTCTGCTACAACGCAAGTAAAGGCACCACCTCAGCTACAGAAAACGGGT 359
Query 508 GCTGTTAGAGTGTCGATGGTAAGTCCTGGATTTGTATATGAACCCTATGCGCTCCGGGAG 567
|| ||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 360 GCCGTTAGAGTGTCAATGGTAAGTCCTGGATTTGTATATGAGCCCTATGCACTCCAGGAG 419
Query 568 AAAATCTCGATTTGGCGGAGATGTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGAT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAATCTCGATTTGGCGGAGATGTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGAT 479
Query 628 TTTATACGGGAGCTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCG 687
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TTTATACGGGAGCTAAGAAGTGCCTACGCTATTGCTAAGTTAAGAAAGACTGGGTATTCA 539
Query 688 AAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGATTAATATTCAGATGGCC 747
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 AAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGATTAATATTCTGATGGCC 599
Query 748 AATGGTGAGAAGAAGACGATAAGGAAAAACGTAACTGAAAGAATGTACTCTGCACTGAAG 807
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 600 AATGGTGACAAGAAGACGATAAGGAAAAATGTAACTGAAAGAATGTATTCTGCACTGAAG 659
Query 808 AACGAAATTAAACAAAGAGAAGCCATGTGGGATGGTGTTTACTGGGAAATGGTTGAGCCG 867
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 AACGAAATTAAACAAAGAGAAGCCATGTGGGATGGTGTTTACTGGGAAATGATTGAGCCG 719
Query 868 GTTGTCAAAATCCGAACTTTACAAGCTCGACTGATTGGAATTGACCGGACGGACCTTAAG 927
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 720 GTTGTCAAGATCCGAACTTTACAAGCTCGACTGATCGGAATTGACCGGACAGACCTTAAG 779
Query 928 AAAGCATTTATACAACTGACACTCGAGTTTCTGACGAAGCAGAAATTTGAAGCATACGAT 987
|||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 780 AAAGCATTCATACAACTGACACTAGAGTTTCTGACAAAGCAGAAATTCGAAGCATACGAT 839
Query 988 GCAAAAGGCAATGTAGCAGCTGGAGATAAGAACAAAGAGGTGCTTGTACGTGACATATGG 1047
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 GCAAAAGGCAATGTAGTAGCTGGAGACAAGAACAAAGAGGTGCTTGTACGTGACATATGG 899
Query 1048 GTCTTTGAGAAGTCTCTTTTCCATACAGGAGCTTACTGGCGGCTCTGTGGCCGGATCAAA 1107
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCTTTGAGAAGTCCCTTTTCCATACAGGAGCTTACTGGCGGCTCTGTGGCCGGATCAAA 959
Query 1108 TTATGAAGTTTTGCAACATTGTGGAC 1133
||||||||| ||||||||||||||||
Sbjct 960 TTATGAAGTATTGCAACATTGTGGAC 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5