BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27400.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942357 jgi|Araly1|942357|scaffold_602901.1 1703 0.0
> Ahg942357 jgi|Araly1|942357|scaffold_602901.1
Length=1152
Score = 1703 bits (922), Expect = 0.0
Identities = 1076/1152 (93%), Gaps = 4/1152 (0%)
Strand=Plus/Plus
Query 8 GGAGCTTGACACGGTGAAGTCATGGCGGCGGAGACGGAGGCAGAATCACAGTACCTTAAT 67
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 1 GGAGCTTGACACGGCGAAGTCATGGCGGCGGAGACGGAGGCGGAGTCACAGTACCTTCAT 60
Query 68 GTACTCTCTGCTTTCCTCGCCATCGAACCGGTGGACTCCGTCATCACTCTCGCTAGAGGG 127
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 61 GTACTCTCTGCTTTCCTCGCCATGGAACCGGTGGACTCCGTTATCACTCTCGCTAGAGGG 120
Query 128 TGCACTGGAGGATCAATTACTGAGAACGCCCAGAGATTTTTCTGGGAAATTTGCGTTGAA 187
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 121 TGTACTGGAGGATCAATTACTGAGAACGCCCAGAGATTTTTCTGGGAAATTTGTGTTAAA 180
Query 188 GCTGCTGCGAATGGTAACGGATCATACGCGAAGAAGTTACTGAAGAAACTCATAAATGAA 247
||||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||
Sbjct 181 GCTGCTGCGAATGGTAATGCAACATATGCGAAGAAGTTACTGAAGAAACTCATAAATGAA 240
Query 248 GTTGAGTTAGAGAATGGTGAAGTATTGGATGAAGTGTATGAAGAGTATGCTCTTTACATG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGAGTTAGAGAATGGTGAAGTATTGGATGAAGTGTATGAAGAGTATGCTCTTTACATG 300
Query 308 TTAACTTCTAAGGAAGATATATTGGTGAAAGAAAACATAAGGATAACCAAATTCATTTCT 367
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 301 TTAACTTCTAAGGAAGATACATTGGTGAAAGAAAACATAAGGATTACCAAATTCATCTCT 360
Query 368 TTTCTTTTCCCTGAAGGTTCGTACAAACACCCGAGTTGTCCAAGGTCGAGGAAATTAGTT 427
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTCTATTCCCACAAGGTTCGTACAAACACCCGAGTTGTCCAAGGTCGAGGAAATTAGTT 420
Query 428 ATTCCGCTGCATTGTTCGTTGAACATGCTTGAAGGAGATACCGGGTGTTCCATCTGGCCA 487
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 ATTCCGCTGCAATGTTCGTTGAACATGCTTGAAGGAGATACTGGGTGTTCCATCTGGCCG 480
Query 488 TCGAGTCTGTTTCTGTCAGAATTTGTTTTGTCATTTCCAGAGTTATTCGCCAATAAAGCC 547
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 481 TCAAGTCTGTTTCTGTCAGAGTTTGTTCTGTCATTTCCAGAGTTATTCGCCAATAAATCC 540
Query 548 TGTTTTGAGGTTGGTTCTGGAGTTGGTATGGTCGGGATTTGCCTTGCACATGTAAAGGCC 607
||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 541 TGTTTTGAGGTTGGTTCCGGAGTTGGCATGGTCGGAATTTGCCTTGCACATGTGAAGGCC 600
Query 608 AAAGAGGTGATACTAACAGACGGAGATCTTTTAACTTTGTCTAACATGAAGCTTAATTTG 667
||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 601 AAAAAGGTGATACTAACAGATGGAGATCTCTTAACTCTGTCTAACATGAAGCTTAATTTG 660
Query 668 GAGAGAAATCACTTAAACTATGATGACGAGTTTCTCAAACAACCCGGAGAAGCTCAGAGT 727
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 661 GAGAGGAATCACTTAAACTATGATGACGAGTTGCTCAAACAACCTGGAGAAGCTCAGAGT 720
Query 728 ACACGAGTTAAATGCACTCATCTTCCATGGGAAACTGCATCGGAAAGTGAACTAAGCCAA 787
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||| || ||
Sbjct 721 ACACAAGTTAAATGCATTCATCTTCCGTGGGAAACTGCATCGGAAAGTGAACTGAGTGAA 780
Query 788 TATCGTCCAGATATTGTTCTAGGCGCAGATGTAATCTATGATCCGTCATGTCTCCCTCAT 847
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 TATCGTCCAGATATTATTCTAGGCGCAGATGTAATCTATGACCCGTCATGTCTCCCTCAT 840
Query 848 CTACTTCGGGTGCTAGTAGCCCTTTTAAAG-AACCCACCCAAAAGAGGA-AATGGCTCTC 905
|||||| |||| || ||||||||| ||| | || ||||| ||||||| | ||||||||||
Sbjct 841 CTACTTAGGGTTCTCGTAGCCCTTCTAA-GTAAACCACCAAAAAGAG-ACAATGGCTCTC 898
Query 906 TCGAGACTGAAGACAGAGACACGACACAAGAAGAACACAGTCCCGCGGTGGCTTATATCG 965
| |||||||||||||| |||||||||| | ||| |||||| ||| |||||||||||| |
Sbjct 899 TTGAGACTGAAGACAGTGACACGACACCACAAGGACACAGCCCCAAGGTGGCTTATATTG 958
Query 966 CATCTGTGATCCGCAATGTAGACACTTTTAATGTGTGCTTGACACTTGCAGACCAAATGG 1025
||||||| || ||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 959 CATCTGTAATTCGCAATGCAGACACTTTTAATGTGTTCTTGACACTTGTAGACCAAATGG 1018
Query 1026 ACCTTTCCATCACAGACGTGACCGCAGAACTTACGCCTCGCTTTGAGCTTTTACCATATA 1085
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1019 ACCTTTCCATCACAGACGTGACCGCAGAACTTAGGCCTCCCTTCGAGCTTTTACCATATA 1078
Query 1086 TGCATTCGTATGACCGCTCAACCGTTCGGCTCTTCTCCATATCCTCCAGATAATGTAATT 1145
||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 1079 TGCATTCATATGACCGCTCAAGCGTTCGGCTCTTTTCCATATCCTCCAGATGATGTAATT 1138
Query 1146 CTTTCAGAAGCA 1157
||||||||||||
Sbjct 1139 CTTTCAGAAGCA 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5