BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27410.1
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489585 jgi|Araly1|489585|fgenesh2_kg.6__2719__AT5G27410.1 2964 0.0
Ahg477806 jgi|Araly1|477806|fgenesh2_kg.3__507__AT3G05190.1 1759 0.0
> Ahg489585 jgi|Araly1|489585|fgenesh2_kg.6__2719__AT5G27410.1
Length=1982
Score = 2964 bits (1605), Expect = 0.0
Identities = 1806/1903 (95%), Gaps = 14/1903 (1%)
Strand=Plus/Plus
Query 45 ttttACATAAGTCCAAGA-T-TATCGTCTGGTTCTTGTTTATAAAGAGAAACACGGACTA 102
|||||||| ||||||||| | | ||| ||||||||||||||||||||| ||||||||| |
Sbjct 28 TTTTACATGAGTCCAAGATTCTCTCGGCTGGTTCTTGTTTATAAAGAGGAACACGGACAA 87
Query 103 AGGCAATAATAGTTTTGTTGAAG-TTGAGATTGATTTCAAAGGGATCGTCTTTAATGGAG 161
||||||||||||||| ||||||| | | ||| |||||||| |||||||||||||||||
Sbjct 88 AGGCAATAATAGTTTAGTTGAAGCGTCTGTTTGGTTTCAAAGCGATCGTCTTTAATGGAG 147
Query 162 GTGATACACGCATGGTCTGCTCCAAGATCACTCAGCACCACTCTCATGTACTCCTTTGCC 221
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 148 GTGATTCACGCATGGTCTGCTCCAAGATCACTCAGCACCACTCTTTTGTACTCCTTTGCC 207
Query 222 CAGAGAGATGACATTGAAGTGCTTGATGAGCCATTATACGCTGCGTTCCTCAAGTCTACG 281
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 208 CAGAGAGATGACATTGAAGTCCTCGACGAGCCATTATACGCTGCGTTCCTCAAGTCTACG 267
Query 282 GGTGTTGATAGGCCTTACAAAGATGAGCTTCTCTCTAAGATGGAGTGTGATGGAGAAAAG 341
|||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 268 GGTGTTGATAGGCCATACAGAGATGAGCTTCTCTCTAAAATGGAGTGTGATGGAGAAAAG 327
Query 342 GTGGTGAAGGATATCATTTATGGTCCAGGAAAGAAGAAATATAGGTTTTGTAAGCATATA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GTGGTGAAGGATATCATTTATGGTCCAGGAAAGAAGAAATATAGGTTTTGTAAGCATATA 387
Query 402 TCGAAACAGCGACTTCTTGGTTTGCCAAGTGAACTAATGAGTGAAGGGAAGCACTTTATA 461
|||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 388 TCGAAACAGCGACTTCTTGGTTTGCCGAGTGAACTAATGAGTAAAGGAAAGCACTTTATA 447
Query 462 TTGATACGCAATCCCCTCAACATATTGCCTTCTTTTGAGAAGATACACCCTTCATCGTTT 521
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 448 TTGATACGCAATCCCCTTAACATATTGCCTTCTTTTGAGAAGGTACACCCTTCATCGTTT 507
Query 522 CACGAATTGGGACTGGGAGAGTTAGTATCGATATACAGTGATCTCTGTCAGATGGGAACA 581
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CACGAATTGGGATTGGGAGAGTTAGTATCGATATACAGTGATCTCTGTCAGATGGGAACA 567
Query 582 CCACCAGCAATCATCGATGCAGATGAGCTCCAGCGAGATCCCGAGGCTACACTACGCAGT 641
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 568 CCACCAGCAATCATCGATGCAGATGAGCTCCAGCGAGATCCCGAGGTTACACTACGCAGT 627
Query 642 CTTTGTGATGACTTAGAGATCCCCTTTCAAGCCTCTATGCTTAAATGGGAGGCTGGTCCT 701
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 628 CTTTGCGATGACTTAGAGATCCCGTTTCAAGCCTCTATGCTTAAATGGGAGGCTGGTCCT 687
Query 702 ATACCAGAAGATGGACTTTGGGCTCCATGGTGGTACGAGACTCTTCATAAATCAACAGGG 761
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 688 ATACCAGAAGATGGACTTTGGGCTCCATGGTGGTACAAGACTCTTCACAAATCAACGGGG 747
Query 762 TTCTCGTCGCCCCAGAAGTACCCTCAGACTTTCCCTTTAATGCATTACGATTTGCTGGAG 821
|| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TTTTCTTCTCCGAAGAAGTACCCTCAGACTTTCCCTTTAATGCATTACGATTTGCTGGAG 807
Query 822 CAATGTTTACCGCTGTACAACATTCTGAGGTGCCACATGAAGCACAAGTCATCGCTCTTG 881
|||||||||||||| ||||||||||| ||| ||||| |||||||||||||||| ||||||
Sbjct 808 CAATGTTTACCGCTATACAACATTCTCAGGCGCCACGTGAAGCACAAGTCATCTCTCTTG 867
Query 882 TCCAGCACCTTACCTCCTCCCAGTCTCCCAGTTCCTGAAAATGCTAAACTTCTTGCTTGG 941
|||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 868 ACCAGAACCTTAACTCCTCCCAGTCTCCCGGTTCCTGAAAATGCTAAACTTCTTGCTTGG 927
Query 942 GTTGGTGATGAGATTGTGCCACGAGAGATGGCGAAGGTTTCTGTTTTTGACTCGGTCGTG 1001
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 928 GTTGGTGATGAGATTGTACCACGTGAGATGGCAAAGGTTTCTGTTTTTGACTCGGTCGTG 987
Query 1002 CAAGGCGGTGACTCTGTATGGGAAGGTCTTCGTATATACAAAGGGAAAGTATTTAAGCTT 1061
||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 988 CAAGGTGGTGACTCTGTATGGGAAGGTCTTCGAATATATAAAGGAAAAGTATTCAAGCTT 1047
Query 1062 GAAGAACATCTAGACCGGTTGTCTGATTCCGCAAAGGCTCTGGCTTTCAACAATGTCCCA 1121
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1048 GAAGAACATCTAGACCGGTTGTCTGATTCAGCAAAGGCTCTGGCTTTCAACAATGTCCCA 1107
Query 1122 ACCCGCGAGGAGATAAAAGAAGCCATCTTCAGAACTCTCATAACCAATGGGATGTTTGAC 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 ACCCGCGAGGAGATAAAAGAAGCCATCTTCAGAACTCTCATAACCAATGGGATGTTTGAC 1167
Query 1182 AATACACATATAAGATTGTCTCTAACTCGAGGCAAAAAGGTCACATCTGGAATGAGCCCT 1241
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1168 AATACACATATAAGACTGTCTCTAACTCGAGGCAAAAAGGTCACTTCTGGAATGAGCCCT 1227
Query 1242 GCATTTAACCGTTATGGATGTACTTTGATCGTGCTTGCTGAATGGAAGCCTCCGGTATAT 1301
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1228 GCATTTAACCGTTATGGATGTACTTTGATCGTGCTTGCCGAATGGAAGCCTCCGGTATAT 1287
Query 1302 GACAATGATGGCGGAATTGTGCTGGTGACTGCAACTACACGCCGGAATTCACCCAACAAT 1361
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1288 GACAATGATGGCGGAATTGTGCTAGTGACTGCAACTACACGCCGCAATTCACCCAATAAT 1347
Query 1362 TTAGATTCCAAGATTCATCACAACAACCTCCTCAATAATATACTTGCAAAGATTGAAAGC 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 TTAGATTCCAAGATTCATCACAACAACCTCCTCAATAATATACTTGCAAAGATTGAAAGC 1407
Query 1422 AACAATGCCAACGTCGATGATGCAATCATGCTTGACAAGGATGGGTTTGTGTCTGAAACC 1481
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1408 AACAATGCCAAAGTCGATGATGCAATCATGCTTGACAAGGATGGATTTGTGTCTGAAACC 1467
Query 1482 AATGCAACCAACATTTTCATGGTGAAGAAAGACCGAGTACTCACTCCTCACGCAGATTAT 1541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1468 AATGCAACCAACATTTTCATGGTGAAGAAAGACCGAGTACTCACCCCTCACGCAGATTAT 1527
Query 1542 TGTCTCCCCGGCATTA-CTCGAGCTACTGTGATGGAACTGGTGGTGAAAGAGAACTTTAT 1600
|||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1528 TGTCTCCCGGGCATTAGC-CGAGCTACTGTTATGGAACTGGTGGTGAAAGAGAACTTCAT 1586
Query 1601 CTTAGAAGAACGTAGAATCAGCTTGTCGGAATTCCATACAGCTGATGAGGTATGGACTAC 1660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 CTTAGAAGAACGTAGAATTAGCTTGTCGGAATTCCATACAGCTGATGAGGTATGGACTAC 1646
Query 1661 AGGAACTATGGGAGAACTCAGCCCGGTTGTGAAAATTGATGGGCGTGTGATCGGTGAAGG 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 AGGAACTATGGGAGAACTCAGCCCGGTTGTGAAAATTGATGGGCGTGTGATCGGTGAAGG 1706
Query 1721 AAAAGTAGGACCGGTAACAAGAAGACTTCAAAATGCTTACAAGAAACTGACGGATGGTTC 1780
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1707 AAAAGTAGGACCGGTAACAAGAAGACTGCAAAGTGCTTACAAGAAACTGACGGATGGTTC 1766
Query 1781 AGGTGTCCCAATACCTACTTACCAAGAAGTCAAGAACCTTGAACCATGTGTTTGATCGTA 1840
||| |||||||||||||||||||||||| | | ||||||||||||| || |||||
Sbjct 1767 AGGCGTCCCAATACCTACTTACCAAGAA--C-----C-TTGAACCATGTGTCTGGTCGTA 1818
Query 1841 GAACACGAATGGa-aaaaaaCATTGCATACGAGGAAAACGGCACGTATTTCAGAGGAAAG 1899
|||||||||||| ||||||||| |||||||| ||||||||||||| | ||||||||||
Sbjct 1819 GAACACGAATGGGTAAAAAACATGGCATACGAACAAAACGGCACGTAATACAGAGGAAAG 1878
Query 1900 CTGTGGTGTTTTACGTTTTTGAATAGAAAGTGCGTGCTGTTTT 1942
||||||||||||| | || ||||||||||||||||||||||||
Sbjct 1879 CTGTGGTGTTTTAAGATTGTGAATAGAAAGTGCGTGCTGTTTT 1921
> Ahg477806 jgi|Araly1|477806|fgenesh2_kg.3__507__AT3G05190.1
Length=1924
Score = 1759 bits (952), Expect = 0.0
Identities = 1437/1670 (86%), Gaps = 38/1670 (2%)
Strand=Plus/Plus
Query 158 GGAGGTGATACACGCATGGTCTGCTCCAAGATCACTCAGCACCA-CTCTCATGTACTCCT 216
||||||||| ||| |||||||||| |||||||| |||||||||| | |||||||||||||
Sbjct 39 GGAGGTGATTCACTCATGGTCTGCGCCAAGATCTCTCAGCACCAGC-CTCATGTACTCCT 97
Query 217 TTGCCCAGAGAGATGACATTGAAG-TGCTTGATGAGCCATTATACGCTGC-GTTCCTCAA 274
|||| ||||||||||||| ||||| || | || ||||| || || || || ||| | ||
Sbjct 98 TTGCTCAGAGAGATGACACTGAAGTTG-TCGACGAGCCGTTGTATGCAGCATTTCTTAAA 156
Query 275 GTCTACGGGTGTTGATAGGCCTTACAAAGATGAGCTTCTCTCTAAGATGGAGTGTGA-TG 333
| |||| |||||||||||||| |||| ||| ||| ||||||| ||||||||||| | ||
Sbjct 157 G-CTACAGGTGTTGATAGGCCATACAGAGACGAGGTTCTCTCCAAGATGGAGTG-CAGTG 214
Query 334 GAGA-AAAGGTGGTGAAGGATATCATTTATGG-TCCAGGAAAGAAGAAATATAGGTTTTG 391
|||| ||| || ||||| ||| |||| ||||| | | ||| ||||||||| ||| | |
Sbjct 215 GAGATAAA-GTTGTGAAAGATGTCATATATGGAT-CTGGATCGAAGAAATACCGGTATCG 272
Query 392 TAAGCATATATCGAAACAGCGACTTCTT-GGTTTGCCAAGTGAACTAATGAGTGAAGGGA 450
||||||||| ||||| ||||| ||| || |||||| |||||||||| ||||| |||| |
Sbjct 273 TAAGCATATCTCGAAGCAGCGGCTT-TTCGGTTTGTCAAGTGAACTGATGAGAAAAGGAA 331
Query 451 AGCACTTTATATTGATACGCAATCCCCTCAACATATTGCCTTCTTTTGAGAAGATACACC 510
||||||| ||||||||||| ||||| || |||||| ||||||| ||||||||| ||||||
Sbjct 332 AGCACTTCATATTGATACGAAATCCTCTTAACATACTGCCTTCCTTTGAGAAGGTACACC 391
Query 511 CTTCATCGTTTCACGAATTGGGAC-TGGGAGAGTTAGTATCGATATACAGTGATCTCTGT 569
|| ||||||||| |||||| || | |||| || ||||| ||||| |||||||||||||||
Sbjct 392 CTCCATCGTTTCTCGAATTAGG-CTTGGGGGAATTAGTGTCGATCTACAGTGATCTCTGT 450
Query 570 CAGATGGGAACACCACCAGCAATCATCGATGCAGATGAGCTCCAGCGAGATCCCGAGGCT 629
|||||||||| |||||||||| |||||||||| |||||||| |||| |||||||||| ||
Sbjct 451 CAGATGGGAATACCACCAGCAGTCATCGATGCGGATGAGCTTCAGCAAGATCCCGAGACT 510
Query 630 ACACTACGCAGTCTTTGTGATGACTTAGAGATCCCCTTTCAAGCCTCTATGCTTAAATGG 689
||||||||| ||||||||||||| || ||||| || |||||||| ||||||| |||||||
Sbjct 511 ACACTACGCGGTCTTTGTGATGATTTGGAGATTCCATTTCAAGCGTCTATGCGTAAATGG 570
Query 690 GAGGCTGGTCCTATACCAGAAGATGGACTTTGGGCTCCATGGTGGTACGAGACTCTTCAT 749
| |||||||||||| ||||||||||| | ||||| |||||||||||| ||| | | ||
Sbjct 571 AATGCTGGTCCTATAGCAGAAGATGGAGTATGGGCACCATGGTGGTACAAGAGTGTGCAC 630
Query 750 AAATCAACAGGG-TTCTCGTCGCCCCAGAAGTACCCTCAG-ACTTTCCCTTTAAT-GCAT 806
||||||| ||| ||||| || || ||||||| |||| | | |||||||| | |||
Sbjct 631 GAATCAAC-GGGTTTCTCATCTCCAAAGAAGTATCCTC-GTTCATTCCCTTT-GTCGCAC 687
Query 807 TACGATTTGCTGGAGCAATGTTTACCGCTGTACAACATTCTGAGGTGCCACATGAAGCAC 866
|||||||||||||||||| || ||||||| ||||||||||| ||| ||||| ||||||||
Sbjct 688 TACGATTTGCTGGAGCAAAGTCTACCGCTTTACAACATTCTCAGGAGCCACGTGAAGCAC 747
Query 867 AAG-TCATCGCTCTTGTCCAG-CACCTTACCTCCTCCCAGTCTCCCAGTTCCTGAAAATG 924
|| || || |||||| || | |||| ||| |||| |||||||||||||||||||| |
Sbjct 748 -AGCTCCTCCCTCTTGAGTAGTC-CCTTGCCTGCTCCTAGTCTCCCAGTTCCTGAAAACG 805
Query 925 CTAAACTTCTTGCTTGGGTTGGTGATGAGATTGTGCCACGAGAGATGGCGAAGGTTTCTG 984
| ||||||||||| ||||| ||||| |||||| |||| || |||||||| ||||||||||
Sbjct 806 CAAAACTTCTTGCATGGGTCGGTGACGAGATTTTGCCTCGTGAGATGGCAAAGGTTTCTG 865
Query 985 TTTTTGACTCGGTCGTGCAAGGCGGTGACTCTGTATGGGAAGGTCTTCGTATATACAAAG 1044
||||||||||||| || |||||||||||||| ||||||||||| ||||| || ||| |||
Sbjct 866 TTTTTGACTCGGTTGTACAAGGCGGTGACTCGGTATGGGAAGGACTTCGGATTTAC-AAG 924
Query 1045 GGAAAG-TATTTAAGCTTGAAGAACATCTAGACCGGTTGTCTGATTCCGCAAAGGCTCTG 1103
|||||| |||| |||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 925 GGAAAGATATTCAAGCTTGAAGAACATCTAGATCGGTTGTTTGATTCAGCAAAGGCTCTG 984
Query 1104 GCTTTC-AACAATGTCCCAACCCGCGAGGAGATAAAAGAAGCCATCTTCAGAACTCTCAT 1162
|||||| || ||||| ||| | || || |||||||||||||| |||||||||||||||||
Sbjct 985 GCTTTCGAA-AATGTTCCAGCGCGTGAAGAGATAAAAGAAGCAATCTTCAGAACTCTCAT 1043
Query 1163 AACCAATGGGATGTTTGACAATACACATATAAGATTGTCTCTAACTCGAGGCAAAAAGGT 1222
||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1044 AACCAATGGTATGTTTGACAATACACATATCAGGCTGTCTCTAACTCGAGGCAAAAAGGT 1103
Query 1223 CACATCTGGAATGAGCCCTGCATTTAACCGTTATGGATGTACTTTGATCGTGCTTGCTGA 1282
|| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 1104 AACTTCTGGAATGAGCCCTGCATTTAATCGATATGGATGTACTTTAATCGTGCTTGCGGA 1163
Query 1283 ATGGAAGCCTCCGGTATATGACAATGATGGCGGAATTGTGCTGGTGACTGCAACTACACG 1342
||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1164 ATGGAAGCCTCCGGTGTATGACAATGATGGTGGAATTGTGCTGGTGACCGCAACCACACG 1223
Query 1343 CCGGAATTCACCCAACAATTTAGATTCCAAGATTCATCACAACAACCTCCTCAATAATAT 1402
|| || || || || ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1224 TCGCAACTCGCCTAATAATTTGGATTCCAAGATTCATCACAACAACCTTCTCAATAACAT 1283
Query 1403 ACTTGCAAAGATTGAAAGCAACAATGCCAACGTCGATGATGCAATCATGCTTGACAAGGA 1462
||| |||||||||||||| ||||| | || | || ||| || || ||||||||||||||
Sbjct 1284 ACTAGCAAAGATTGAAAGTAACAACACGAATGCCGCTGACGCCATTATGCTTGACAAGGA 1343
Query 1463 TGGGTT-TGTGTCTGAAACCAATGCAACCAACATTTTCATGGTGAAGAAAGACCGAGTAC 1521
| |||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1344 T-GGTTATGTGTCTGAAACCAATGCAACCAACATTTTCATGGTGAAGAAAGGCTGTGTAC 1402
Query 1522 TCACTCCTCACGCAGATTATTGTCTCCCCGGCATTACTC-GAGCTACTGTGATGGAACTG 1580
| ||||||||||||||||| |||||||| ||||| || | ||||||| || ||||||||
Sbjct 1403 TTACTCCTCACGCAGATTACTGTCTCCCTGGCATAAC-CAGAGCTACCGTCATGGAACTT 1461
Query 1581 GTGGTGAAAGAGAACTTTATCTTAGAAGAACGTAGAATCAG-CTTGTCGGAATTCCATAC 1639
||||||||||||||||| |||||||||||| | |||||||| || || ||||| |||||
Sbjct 1462 GTGGTGAAAGAGAACTTCATCTTAGAAGAAAGAAGAATCAGTCTC-TCCGAATTTCATAC 1520
Query 1640 AGCTGATGAGGTATGGACTACAGGAACTATGGGAGAACTCAGCCCGGTTGTGAAAATTGA 1699
||| |||||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1521 AGCCGATGAGGTATGGACAACTGGAACTATGGGGGAACTAAGCCCGGTTGTGAAAATCGA 1580
Query 1700 TGGGCGTGTGATCGGTGAAGGAAAAGTAGGACCGGTAACAAGAAGACTTCAAAATGCTTA 1759
||| || ||||| ||||| |||||||| ||||||||||| |||| ||| ||||| |||||
Sbjct 1581 TGGACGCGTGATTGGTGACGGAAAAGTTGGACCGGTAACGAGAACACTGCAAAACGCTTA 1640
Query 1760 CAAGAAACTGACGGATGG-TTCAGGTGTCCCAATACCTACTTACCAAGAA 1808
|||||||||||| || || ||||||||| |||||||||||||||||||||
Sbjct 1641 CAAGAAACTGACAGA-GGATTCAGGTGTGCCAATACCTACTTACCAAGAA 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80865590135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5