BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27420.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942355 jgi|Araly1|942355|scaffold_602899.1 1624 0.0
> Ahg942355 jgi|Araly1|942355|scaffold_602899.1
Length=1156
Score = 1624 bits (879), Expect = 0.0
Identities = 1069/1159 (92%), Gaps = 20/1159 (2%)
Strand=Plus/Plus
Query 26 TTTTGGGACTCCAGAACTAATAATGGATCCCATAAAACACATCTCTTTACCAGTTCTTGT 85
|||||||| |||||| |||| ||||||||||||||| || |||||||||| ||||||| |
Sbjct 2 TTTTGGGATTCCAGAGCTAACAATGGATCCCATAAAGCAAATCTCTTTACTAGTTCTTCT 61
Query 86 CTTGTTTCTACTATTATCCGTGTCGGCGGGTCAACCCGGAACCCCGGACCAGAGACA-TG 144
||| |||||||| ||||||| |||||||||||| |||||| |||| ||| |||| | ||
Sbjct 62 CTTCTTTCTACTTTTATCCGGGTCGGCGGGTCAGCCCGGATCCCCAAACCCGAGA-AGTG 120
Query 145 ACCCGTATGCTTACAGCGGCAGTCTAAGTCCAGCCATGGCTGTTGTCGTTGTAGTTGTCA 204
||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 121 ACCAATATGCTTACAGCGGCAGTCTTAGTCCCGCCATGGCTGTTGTCGTTGTAGTCGTCA 180
Query 205 TCGCAGCTCTCTTCTTCATGGGCTTCTTCACCGTCTATATACGTCACTGTACTGGCGCAG 264
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 181 TCGCAGCTCTCTTCTTTATGGGCTTCTTCACCGTCTACATACGCCACTGTACTGGCGCAG 240
Query 265 TAGACGGTAGCGTTACTCCTGCAGGAGGAGCTAGGAGGAGAGTGACGAACGCAACGGTTG 324
||||||| | |||||||||| |||||||||| ||||||||||| || ||||||||||| |
Sbjct 241 TAGACGGCAACGTTACTCCTACAGGAGGAGCGAGGAGGAGAGTAACAAACGCAACGGTGG 300
Query 325 CGCGTGGGTTAGACGCGGAGACGATCGAGACGTTTCCGACTTTTGTTTACTCAGAAGTGA 384
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 301 CGCGTGGGTTAGACGCGGAGACTATCGAGACGTTTCCGACTTTTGTATACTCGGAAGTGA 360
Query 385 AGACACAGAAGATTGGTAAAGGAGCGTTGGAGTGTGCGATTTGTTTGAATGAGTTTGAAG 444
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACTCAGAAGATTGGTAAAGGAGCGTTGGAGTGTGCGATTTGTTTGAATGAGTTTGAAG 420
Query 445 ACGATGAAACGCTGCGTCTGTTGCCTAAATGTGATCACGTGTTTCATCCTCATTGTATCG 504
|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 421 ACGACGAAACGCTGCGTTTGTTACCTAAATGTGATCACGTGTTTCATCCTCATTGTATAG 480
Query 505 GCGCGTGGCTTCAAGGTCACGTGACTTGTCCGGTTTGTCGGACTAATCTTGCTGAAC--- 561
||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 481 GCGCGTGGCTTGAAGGTCACGTGACTTGTCCGGTTTGTCGGACTAATCTCGCCGAACAGA 540
Query 562 AGA-CG--CC---TGAACCGGAAGTGGTGGTGGAAACCGATCTTGAGGCGCAGCAGCAAT 615
||| | || ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 541 AGATTGAACCGGTTGAACCGGAAGCGGTGGTGGAAATTGATCTTGAAGCGCAGCAGCAAG 600
Query 616 CGGCGGTTCCTGTACCGGTGGTGGAACTTCCACGTGTTAAA-TTCCCGAGGTCGCATACG 674
|||||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||||||||
Sbjct 601 CGGCGGTTCCTGAACCGGTGGTGGAACTACCACGTG-TAAATTTCTCGAGGTCGCATACG 659
Query 675 ACAGGG-CATTCGGTGGTTTTACCGGGAGAGAGTACCGACCGGTTTACGCTTAGAGTACC 733
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 AC-GGGTCATTCGGTGGTTTTACCGGGAGAAAGTACCGACCGGTTTACGCTTAGAGTACC 718
Query 734 GGAAGAATTAAGGAAGAAGATAATGGCGAATTGGAAATTGAACCGGTCGAATAGTGTTTT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGAAGAATTAAGGAAGAAGATAATGGCGAATTGGAAATTGAACCGGTCGAATAGTGTTTT 778
Query 794 TGTTTTACCGAGAGGAGGAAGCTCGAGGAGTGGTAAACAGGTTGACCGGTCGAGGGCTAA 853
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 779 TGTTCTACCGAGAGGAGGAAGCTCGAGGAGTGGTAAACCGGTTGACCGGTCGAGAGCTAA 838
Query 854 ATCGGACCGGTGGTTGTTCCGTAAAACTCCGTCGTTTCTATGGAGGAACCGGGATGATGG 913
||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 839 ATCGGACCGGTGGTTATTCCGTAAAACCCCGTCGTTTCTGTGGCGGAACCGGGATGATGG 898
Query 914 TTCGATTAGGCTAGGTGGTACCGGTAGTGTTAGAGGAAATTCAGTAACAAGTCCGAGCGG 973
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 899 TTCGATTAGGCTTGGTGGAACCGGTAGCGTTAGAGGAAATTCAGTAACAAGTCCGACCGG 958
Query 974 TGACTCGGTACGAGCAGACCGGTGGGCTTTTCTTAGAAACCCATCGTTTCTCTGGAGGAA 1033
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 TGACTCGGTACGAGCAGACCGGTGGGCTTTTCTAAGAAACCCATCGTTTCTCTGGAGGAA 1018
Query 1034 TACGACGCCGGTTCCTTCGCCGAGAGTTGAAGTCAATAATAAGGACGGTGAAGGAACATC 1093
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 TACGACGCCGGTTCCTTCGCCGAGAGTTGAAGTCAATAA---GGACGGTGAAGGAACATC 1075
Query 1094 GTCAGTTCAACATATCGGTACAGTTGGTTCAACTAGCGGTTCCCTTAGGCTACCGGTTTA 1153
||| |||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1076 GTCGGTTCAACATACCGGTACAGTTGGTTCAGCTAGCGGTTCCGTTAGATTACCGGTTTA 1135
Query 1154 GT-G-TTCGGTGATGTTTT 1170
|| | || |||||||||||
Sbjct 1136 GTTGGTTTGGTGATGTTTT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5