BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27430.1
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942354 jgi|Araly1|942354|scaffold_602898.1 911 0.0
Ahg477810 jgi|Araly1|477810|fgenesh2_kg.3__511__AT3G05230.1 523 7e-148
> Ahg942354 jgi|Araly1|942354|scaffold_602898.1
Length=544
Score = 911 bits (493), Expect = 0.0
Identities = 523/538 (97%), Gaps = 0/538 (0%)
Strand=Plus/Plus
Query 74 AAACTCCGATTGAAAGAGGATGCATTCTTTTGGTTACAGAGCGAATGCTCTACTCACATT 133
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2 AAACTCCGATTGAAAGAGGATGCATTCTTTTGGTTACAGAGCCAATGCTCTGCTCACATT 61
Query 134 CGCCGTCACGATTCTAGCTTTCATTTGCGCGATTGCTTCCTTCTCTGATAACTTCAGTAA 193
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CGCCGTCACAATTCTAGCTTTCATTTGCGCGATTGCTTCCTTCTCTGATAACTTCAGTAA 121
Query 194 CCAAAATCCCTCTGCTCAGATCCAGATATTGAATATCAATTGGTTTCAGAAGCAACCTCA 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 122 CCAAAATCCCTCTGCTCAGATCCAGATATTGAATATCAATTGGTTTCAGAAGCAACCCCA 181
Query 254 TGGAAATGATGAGGTCAGCTTGACACTGAACATAACAGCTGACTTGCAGTCACTATTTAC 313
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 182 TGGAAATGATGAGGTCAGCTTGACACTGAACATAACAGCAGACTTGCAGTCACTTTTTAC 241
Query 314 TTGGAACACAAAGCAGGTATTTGCTTTTGTAGCAGCAGAGTATGAAACCTCCAAGAACGC 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTGGAACACAAAGCAGGTATTTGCTTTTGTAGCAGCAGAGTATGAAACCTCCAAGAACGC 301
Query 374 CCTGAATCAGGTTTCACTATGGGATGCCATAATACCAGAGAAAGAGCATGCCAAATTCTG 433
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 302 CCTCAATCAGGTTTCGCTATGGGATGCCATAATACCCGAGAAAGAGCATGCCAAATTCTG 361
Query 434 GATACAAATCTCAAACAAGTACCGTTTCATAGATCAGGGACATAACCTCCGAGGGAAGGA 493
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 362 GATACAAATCTCAAACAAGTACCGTTTCATAGATCAGGGACACAACCTCCGAGGGAAGGA 421
Query 494 CTTTAACTTGACATTGCACTGGCATGTCATGCCCAAGACAGGCAAGATGTTTGCTGACAA 553
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 422 CTTCAACTTGACATTGCACTGGCATGTTATGCCCAAGACGGGCAAGATGTTTGCTGACAA 481
Query 554 AATAGTTATGTCTGGTTATCGTTTACCTAATGCATACAGATGAAGATGAAGAGCCTCC 611
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 482 AATAGTTATGTCTGGTTATCGTTTACCCAATGCATACAGATGATGATGAAGAGCCTCC 539
> Ahg477810 jgi|Araly1|477810|fgenesh2_kg.3__511__AT3G05230.1
Length=802
Score = 523 bits (283), Expect = 7e-148
Identities = 439/513 (86%), Gaps = 16/513 (3%)
Strand=Plus/Plus
Query 92 GATGCATTCTTTTGGTTACAGAGCGAATGCTCTACTCACATTCGCCGTCAC-GATTCTAG 150
||||||| |||||||||||||||| |||||||| ||||| ||||| ||||| | || |
Sbjct 152 GATGCATACTTTTGGTTACAGAGCAAATGCTCTGCTCACGTTCGCAGTCACTG-CGCTTG 210
Query 151 CTTTCATTTGCGCGATTGCTTCCTTCTCTGATAACTTCAGTAACCAAAATCCCTCTGCTC 210
| ||||||||||| || ||||| ||||| || || ||||| ||||||||||||||||||
Sbjct 211 CATTCATTTGCGCAATCGCTTCTTTCTCGGACAAATTCAGCAACCAAAATCCCTCTGCTG 270
Query 211 AGATCCAGATA-TTGAATATCAATTGGTTTCAGAAGCAACCTCATGGAAATGATGAGGTC 269
||||||||||| || ||||| ||| ||||| |||||||| ||||||| ||||||||||||
Sbjct 271 AGATCCAGATACTT-AATATTAATCGGTTTAAGAAGCAATCTCATGGCAATGATGAGGTC 329
Query 270 AGCTTGACACTGAACATAACAGCTGACTTGCAGTCACTATTTACTTGGAACAC-AAAGCA 328
||||||||| || | ||| |||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 330 AGCTTGACATTGGATATATCAGCAGACTTGCAGTCACTATTTACTTGGAACACCAAA-CA 388
Query 329 GGTATTTGCTTTT-GTAGCAGCAGAGTATGAAACCTCC-AAGAACGCCCTGAATCAGGTT 386
||| |||| |||| |||||||| |||||||||||| || ||||| ||||||||||||||
Sbjct 389 GGTTTTTG-TTTTCGTAGCAGCCGAGTATGAAACC-CCGAAGAATTCCCTGAATCAGGTT 446
Query 387 TCACTATGGGATGCCATAATACCAGAGAAAGAGCATGCCAAATTCTGGATACAAATCTCA 446
|| |||||||||| || || || | || || |||||||||||| |||| ||| |||||
Sbjct 447 TCTTTATGGGATGCGATTATCCCTGCCAAGGAACATGCCAAATTCCGGATTCAAGTCTCA 506
Query 447 AACAAGTACCGTTTCATAGATCAGGGACATAACCTCCGAGGGAAG-GACTTTAACTTGAC 505
|||||||| |||||||| ||||||||||| || || || ||||| || || ||||||||
Sbjct 507 AACAAGTATCGTTTCATCGATCAGGGACAGAATCTTCG-GGGAAAAGAATTCAACTTGAC 565
Query 506 ATTGCACTGGCATGTCATGCCCAAGACAGGCAAGATGTTTGCTGACAAAATAGTTATGTC 565
||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| |
Sbjct 566 ATTACACTGGCATGTCATGCCCAAGACCGGGAAGATGTTTGCTGACAAGATAGTCATGCC 625
Query 566 TGGTTATC-GTTTACCTA-ATGCATACAGATGA 596
|||||| | ||||||| | ||||||||||||||
Sbjct 626 TGGTTA-CAGTTTACC-AGATGCATACAGATGA 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30727071102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5