BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27440.1
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489583 jgi|Araly1|489583|fgenesh2_kg.6__2717__AT5G27440.1 1040 0.0
> Ahg489583 jgi|Araly1|489583|fgenesh2_kg.6__2717__AT5G27440.1
Length=779
Score = 1040 bits (563), Expect = 0.0
Identities = 713/784 (91%), Gaps = 16/784 (2%)
Strand=Plus/Plus
Query 2 AGAAGACAGAAATTGCGGTAATGACTCTTCTTCATCTG--A-CATCGCATCTCAGTAGGT 58
|||| ||||||||||||||||||||||||||||||||| | |||||||||||| | |||
Sbjct 1 AGAAAACAGAAATTGCGGTAATGACTCTTCTTCATCTGACATCATCGCATCTCAATGGGT 60
Query 59 TTCATTTTCTTAATCCACAAAAAAG-TCTGAGACTTTCATCAATTTCTCGAGTTTCT-TC 116
|||||||||||||||||||| |||| || || |||||||||||| |||||| |||| |
Sbjct 61 TTCATTTTCTTAATCCACAACAAAGTTC-GAAACTTTCATCAATATCTCGA--TTCTCTG 117
Query 117 T-TCGATTTCACATCGGACCCAGTTTCAAAGTTTGGTTCTTTGTGCAAAGAAGAGGAAAC 175
| |||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||
Sbjct 118 TGTCGATTTCACATCGAAACCAGTTCCAAAGTTTGGTTATTTGTGCAAAGAAGAGGAAAA 177
Query 176 AAAGAGTTGGGTATCGAAGAATCACGAGGTTTCTGTTCAATTCACTGTCTTTATTGGCAC 235
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||
Sbjct 178 AAAGAGTTGGGTATCGAAGAATCACGAGGTTTTTGTTCAATTCAATGTCTTTACTGCCAC 237
Query 236 CTAATCTCCAGATTTTACCACAGCCCTTGGATCTTGTCATTGCTGATTTGGGCGGCGTAG 295
||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 238 CTAATCTCCAGATTTTAACACAGCCGTCGGATCTTGTTATTGCTGATTTGGGCGGCGTAG 297
Query 296 ATggaggaggaggaggaagaggagggttagggttttggagaggatggggaagatttgatg 355
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGGAGGAGGAGGAAGAGGAGGAGGGTTAGGGTTTTGGAGAGGATGGGGAAGATTTGATG 357
Query 356 gatggagaaggaAAAAGAACAAAGTGCCAATTTTGGTTTTTGTTTGTGTGATTCTTTGGA 415
||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||
Sbjct 358 GATGGAGAAGGAAAAAGAACAGAGTACCAATTTTGGCTTTTGTTTGTGTGATTCTATGGG 417
Query 416 TTTATGGTTTTTGCAAAATCTCTGGGATAGAGATTAAGAGTGAATTGGTTTTGAAGGTTT 475
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 TTTATGGTTTCTGCAAAATCTCTGGGATAGAGATTAAGAGTGAATTGGTTTTGAAGCTTT 477
Query 476 TGGGGCTTTGTTTATTTGGTGTCACTGTGGTTAAAGAGTTGAAGAGAGAAGCTAGATTTT 535
|||| |||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 478 TGGGACTTTGTTTCTTTGGTGTCACTATGGTTCGAGAGTTGAAGAGAGAGGCTAGATTTT 537
Query 536 TGGTGTTTGGGTTTCTCTGCGTCGTTGCTTCATTGGTTTTTGGATACAAGAAAGAGAATT 595
|||| |||||||||||||| | |||||||||||||||||||||| |||||||||| |||
Sbjct 538 TGGTTTTTGGGTTTCTCTGTTTTGTTGCTTCATTGGTTTTTGGATTCAAGAAAGAGCATT 597
Query 596 TTGTGAAGTTAGCTTCAAGAGTTAGATCTTGTTCTTC---AGTTCTTC-TTGGTAATAAG 651
| ||||| ||||||| ||||||||||||| |||||| |||||||| ||| ||| |||
Sbjct 598 TGGTGAAATTAGCTTTGAGAGTTAGATCTTCTTCTTCTTCAGTTCTTCATTG-TAA-AAG 655
Query 652 -AGAAGTCGTAGAAGAGTGTAAATAGAGAGGAAGATTAGTGATTCTGTTGTTTACTCCAT 710
||||||||||||||||| | | ||||||||||||||| |||||||| ||||||||||||
Sbjct 656 GAGAAGTCGTAGAAGAGTTTGATTAGAGAGGAAGATTATTGATTCTGCTGTTTACTCCAT 715
Query 711 TATCTTTCAATTGAGAttttttttGCTAAACTTTGTTGAATTTGTCTGCAATTGGATTTG 770
||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||
Sbjct 716 TATCTTTCAATTGAGATTTCTTTTGCTAAACTTTGATGAATTTGTCTGTAATTGGATGTG 775
Query 771 ATGA 774
||||
Sbjct 776 ATGA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30345841932
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5