BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27450.1
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489582 jgi|Araly1|489582|fgenesh2_kg.6__2716__AT5G27450.1 2037 0.0
> Ahg489582 jgi|Araly1|489582|fgenesh2_kg.6__2716__AT5G27450.1
Length=1405
Score = 2037 bits (1103), Expect = 0.0
Identities = 1229/1290 (95%), Gaps = 8/1290 (1%)
Strand=Plus/Plus
Query 1 AACACGATTCTCGTTGGCTTCAGACA-TTTTCCATCTTCTAGGTTTCTTTC-TTT-CTCA 57
|||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||
Sbjct 1 AACACGATTCTCGTTGGCTTGAGACATTTTTCCATCTTCTAGGTTTCTTTCTTTTGCTCA 60
Query 58 GCAATTTCCAGGAAAATGGAAGTGAAAGCTAGAGCTCCTGGGAAGATCATACTTGCAGGG 117
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCAATTTCCAGCAAAATGGAAGTGAAAGCTAGAGCTCCTGGGAAGATCATACTCGCAGGG 120
Query 118 GAACACGCTGTTGTTCATGGATCCACCGCTGTAGCTGCCGCCATTGATCTCTACACTTAC 177
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GAACACGCGGTTGTCCATGGATCCACCGCAGTAGCTGCCGCCATTGATCTCTACACTTAC 180
Query 178 GTTACTCTCCGCTTTCCTCTTCCATCAGCTGAGAACAATGATAGGCTTACACTTCAGCTC 237
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTACTCTCCGCTTTCCTCTTCAATCAGCTGAGAACAATGATAGGCTTACACTTCAGCTC 240
Query 238 AAGGACATTTCCTTGGAGTTTTCATGGTCCTTAGCCAGAATCAAAGAAGCGATTCCTTAT 297
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 241 AAGGACATTTCCTTGGAGTTTTCCTGGTCCTTGGCCAGAATCAAAGAAGCAATTCCTTAT 300
Query 298 GATTCAAGCACTCTCTGCCGTTCTACGCCGGCTTCATGTTCAGAGGAGACCCTTAAATCA 357
|||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 301 GATTCAAGCACTTTGTGCCGTTCTACGCCGACTTCATGTTCACAGGAGACCCTTAAATCA 360
Query 358 ATTGCAGTTTTGGTTGAAGAGCAAAATCTTCCAAAGGAAAAGATGTGGCTCTCCTCTGGG 417
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATTGCAGTTTTGGTCGAAGAGCAAAATCTTCCAAAGGAAAAGATCTGGCTCTCCTCTGGG 420
Query 418 ATCTCCACGTTTCTCTGGTTATACACCAGAATTATAGGGTTCAATCCGGCTACAGTAGTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCTCCACGTTTCTCTGGTTATACACCAGAATTATAGGGTTCAATCCGGCTACAGTAGTC 480
Query 478 ATTAACTCTGAGCTTCCATACGGGTCTGGCCTCGGTTCATCAGCAGCTTTATGTGTAGCT 537
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTAACTCTGAGCTTCCATATGGATCTGGCCTCGGTTCATCAGCAGCTTTATGTGTAGCT 540
Query 538 CTCACAGCTGCTCTCCTTGCTTCTTCTATTTCAGAGAAAACCCGTGGTAACGGTTGGTCA 597
||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 541 CTCACAGCTGCTCTCCTCGCTTCTTCTATTTCAGATAAAACCTGTGGTAATGGTTGGTCA 600
Query 598 TCTCTCGATGAAACCAATCTTGAGTTGCTAAATAAATGGGCTTTCGAAGGCGAAAAGATC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCTCGATGAAACCAATCTTGAGTTGCTAAATAAATGGGCTTTCGAAGGCGAAAAGATC 660
Query 658 ATCCATGGGAAACCTTCTGGGATAGACAACACCGTCAGTGCATACGGCAACATGATCAAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCCATGGGAAACCTTCTGGGATAGACAACACCGTCAGTGCATACGGCAACATGATCAAG 720
Query 718 TTCTGCTCAGGCGAGATAACTCGGTTACAATCCAACATGCCTCTGAGAATGCTAATTACC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCTGCTCAGGCGAGATAACTCGGTTACAATCCAACATGCCTCTGAGAATGCTAATTACC 780
Query 778 AACACTAGAGTTGGGCGAAACACAAAAGCTCTGGTCTCTGGTGTGTCACAGAGAGCGGTA 837
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 781 AACACTAGAGTTGGGCGGAACACAAAAGCCCTGGTCTCTGGTGTGTCACAGAGAGCGGCA 840
Query 838 AGACATCCTGATGCGATGAAGTCAGTGTTCAACGCCGTGGATTCTATAAGCAAAGAGCTC 897
|||||||| ||||||||||| || ||||||||||| ||||||||||||||| ||||||||
Sbjct 841 AGACATCCCGATGCGATGAACTCGGTGTTCAACGCTGTGGATTCTATAAGCCAAGAGCTC 900
Query 898 GCTGCGATCATTCAGTCTAAAGACGAGACCTCAGTTACAGAAAAAGAAGAGAGAATAAAA 957
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 901 GCTGCGATCATTCAATCTAAAGACGAGACCTCAGTTACAGAGAAAGAAGAGAGTATAAAA 960
Query 958 GAACTCATGGAGATGAACCAAGGTCTGCTCCTGTCAATGGGGGTTAGCCACAGCTCAATC 1017
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 961 GAACTCATGGAGATGAACCAAGGTCTGCTCCAGTCAATGGGGGTTAGCCACAGCTCGATT 1020
Query 1018 GAGGCTGTGATTCTAACCACGGTCAAGCACAAGCTTGTCTCCAAACTTACAGGAGCTGGT 1077
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 GAGGCTGTGATCCAAACCACGGTCAAGCACAAGCTTGTCTCCAAACTGACAGGAGCTGGT 1080
Query 1078 GGCGGCGGCTGCGTCCTCACTCTATTACCAACCGGGACGGTGGTGGACAAAGTGGTGGAG 1137
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1081 GGCGGCGGTTGCGTCCTCACTCTATTACCAACTGGAACGGTGGTGGACAAAGTGGTGGAG 1140
Query 1138 GAGCTCGAGTCCAGCGGTTTTCAGTGTTTCACGGCATTGATTGGTGGTAACGGAGCTCAG 1197
|||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 1141 GAGCTCGAATCCAGCGGTTTTCAGTGCTTCACGGCGTCAATTGGTGGTAACGGAGCTCAG 1200
Query 1198 ATTTGCTATTGATCAGGTC-GGAAAAATCATATTTGGCCTCTCACCATTCTTAAACTTGC 1256
||| | |||||| || | | |||||| |||||||||||||||||||||| ||||||||||
Sbjct 1201 ATTAGTTATTGA-CATGACTGGAAAA-TCATATTTGGCCTCTCACCATTTTTAAACTTGC 1258
Query 1257 TGAC--GTGTACGTCAAGAAGGCTGCAATT 1284
|||| |||||| |||||||||||||||||
Sbjct 1259 TGACTTGTGTACTTCAAGAAGGCTGCAATT 1288
Score = 75.0 bits (40), Expect = 1e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1304 TTTTTCTTATAAATGATGTGTTGAATGTAAAATTGCTTTATTA 1346
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1287 TTTTTCTTATAACTGATGTGTTGAATGTAAAATTGCTTTATTA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54583321085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5