BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27460.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351743 jgi|Araly1|351743|fgenesh1_pg.C_scaffold_6002336 2065 0.0
> Ahg351743 jgi|Araly1|351743|fgenesh1_pg.C_scaffold_6002336
Length=1479
Score = 2065 bits (1118), Expect = 0.0
Identities = 1352/1464 (92%), Gaps = 20/1464 (1%)
Strand=Plus/Plus
Query 40 CGTTGCGGTTGCGAAGACGAGGTTCAACACCACCGGCGTAGTATCAAGGCTCGTGTCTTC 99
|||||| ||||||||||||||| ||| |||||| ||||||| |||||||||||||| |
Sbjct 10 CGTTGC-GTTGCGAAGACGAGGCTCACCACCACTGGCGTAG---CAAGGCTCGTGTCTAC 65
Query 100 ACTTGCAGATGGTTCGGACACGTCATCAGTCGCAAATCGGAATAGCTTGAAGGAGATACT 159
|||| |||| ||||||| ||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 66 TCTTGGAGATTGTTCGGATACGTCATCACTCGCACATCGGAATAGCTTGAAGGAGATTCT 125
Query 160 GAGAAAGAACGGTCCACGACGCAGCGTTACCTCTCTGCTTCAGGAACGGATCGATTCGGG 219
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 126 GAGAAAGAACGGTCCACGCCGCAGTGTTACCTCTCTGCTTCAGGAACGGATCGATTCGGG 185
Query 220 TCATGCCGTCTCTTTATCGGAGCTCCGATTGATTTCCAAGCGTCTCATTAGATCAAATCG 279
||| |||||| | ||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 186 TCACGCCGTCGCGTTATCGGAGCTCCGATTCATCTCCAAGCGTCTCATTAGATCTAATCG 245
Query 280 TTACGATCTCGCTCTCCAGATGATGGAGTGGATGGAGAATCAAAAAGATATTGAATTTAG 339
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 246 CTACGATCTCGCTCTCCAGATGATGGAGTGGATGGAGAATCAAAAAGAGATTCAATTTAG 305
Query 340 TGTTTATGACATTGCTCTTAGATTGGATTTGATCATCAAAACTCATGGCTTGAAACAAGG 399
|||| |||||||| |||||||||| || || ||||||||||||||||||||||||||||
Sbjct 306 TGTTGATGACATTTCTCTTAGATTAGAGTTAATCATCAAAACTCATGGCTTGAAACAAGC 365
Query 400 AGAGGAGTATTTTGAGAAGCTGCTACATAGTTCTGTGTC-TATGAGAGTAGCGAAATCGG 458
||||||||||||||||||||| ||| |||| |||| || | ||||||||||||||||||
Sbjct 366 AGAGGAGTATTTTGAGAAGCTACTAAATAGCTCTGCCTCGT-TGAGAGTAGCGAAATCGG 424
Query 459 CTTATCTTCCGCTTCTTCG-TGCTTATGTGAAGAATAAAATGGTTAAAGAAGCGGAAGCT 517
|||||||||| |||||||| | |||||||||||| |||||||||||||||| ||||| |
Sbjct 425 CTTATCTTCCTCTTCTTCGCAG-TTATGTGAAGAAGAAAATGGTTAAAGAAGGGGAAGTT 483
Query 518 CTAATGGAGAAGTTGAATGGATTAGGGTTTCTTGTTACTCCACACCCGTTTAACGAAATG 577
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 484 TTTATGGAGAAGTTGAATGGATTGGGGTTTCTTGTTACTCCACACCCGTTTAACGAAATG 543
Query 578 ATGAAGCTTTATGAAGCTAGTGGTCAGTATGAGAAAGTAGTTATGGTTGTTTCGATGATG 637
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 544 ATGAAGCTTTATGAAGCTAGTGGTCAGTATGAGAAAGTTGTTATGGTTGTTTCGATGATG 603
Query 638 AAAGGGAATAAGATACCAAGAAACGTTCTTTCGTATAATCTTTGGATGAATGCATGTTGT 697
|||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 604 AAAGTGAATAAGATACCGAGAAATGTTCTTTCGTATAATCTTTGGATGAATGCTTGTTGT 663
Query 698 GAAGTGTCTGGAGTTGCGGCTGTGGAAACGGTTTATAAGGAAATGGTTGGTGATAAGAGT 757
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CAAGTGTCTGGTGTTGCGGCTGTGGAAACGGTTTATAAGGAAATGGTTGGTGATAAGAGT 723
Query 758 GTTGAAGTTGGGTGGAGTTCGTTGTGTACTTTAGCTAATGTTTATATTAAGAGT-GGTTT 816
||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 724 ATTGAAGTTGGGTGGAGTTCGTTGTGTACTTTGGCTAATGTTTATATTAAGGGTCGGTTT 783
Query 817 TGATGAGAAGGCTAGGTTGGTGCTTGAGGATGCGGAAAAGATGTTGAATAGAAGTAATAG 876
||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 784 -GATGAGAAGGCTAAGTTGGTTCTTGAGAATGCGGAAAAGATGTTGAATAGAAGTAATAG 842
Query 877 GCTTGGATATTTCTTTCTTATCACGCTTTATGCGTCTTTAGGGAATAAGGAAGGAGTTGT 936
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GCTTGGATATTTCTTCCTTATCACGCTTTATGCGTCTTTAGGGAATAAGGAAGGAGTTGT 902
Query 937 TCGTTTGTGGGAAGTTTCTAAATCGGTTTGTGGTAGGATTAGTTGTGTGAACTACATATG 996
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 903 TCGTTTGTGGGAAGCTTCTAAATCGGTTTGTGGTAGGATTAGTTGTGCGAATTACATATG 962
Query 997 TGTATTGTCGTCTTTGGTGAAAACT-GGTGATCTTGAAGAGGCTGAAAGGGTGTTTAGTG 1055
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 963 TGTATTGTCGTCTTTGGTGAAAA-TAGGTGGTCTTGAAGAGGCTGAAAGGGTGTTTAGTG 1021
Query 1056 AGTGGGAGGCTCAATGTTTTAACTATGATGTTAGGGTCTCCAATGTTCTTTTGGGTGCTT 1115
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AGTGGGAGGCTGAATGCTTTAACTATGATGTTAGGGTCTCCAATGTTCTTTTGGGTGCTT 1081
Query 1116 ATGTGCGTAATGGAGAAATCCGGAAAGCCGAGTCATTGCATGGTTGTGTGTTGGAGAGAG 1175
|||||||||||||| ||||||||||||| ||||||||||| | |||| ||||| |||
Sbjct 1082 ATGTGCGTAATGGACAAATCCGGAAAGCTGAGTCATTGCACGCCCGTGTATTGGATCGAG 1141
Query 1176 GAGGT-ACTCCAAACTACAAGACCTGGGAAATCTTAATGGAGGGATGGGTGAAATGTGAG 1234
||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 1142 GAGGTGA-TCCAAACTACAAGACTTGGGAAATCCTAATGGAGGGATGGGTGAAATGTCA- 1199
Query 1235 AA-TATGGAGAAAGCCATTGATGCTATGCACCAAGTGTTTGTACTAATGAGGCGG-TGTC 1292
|| ||||||||||||||||| |||||||||||||| ||||| |||||||| | || || |
Sbjct 1200 AAGTATGGAGAAAGCCATTGTTGCTATGCACCAAGCGTTTGAACTAATGAAG-GGATGCC 1258
Query 1293 ATTGGAGGCCATCCCATAACATCGTCATGGCGATTGCCGAGTACTTTGAGAAAGAGGAGA 1352
||||||| ||||| || ||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 1259 ATTGGAGACCATCGCAAAACATTGTCATGGCGATTGCCAAGTACTTTGAGAAAGAGGGGA 1318
Query 1353 AAATTGAAGAAGCAA-CTGCATATGTTAGAGATTTGCATCGTCTTGGTCTTGCAAGCTTA 1411
||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1319 AAATTGAAGAAGCAAACA-CATATATTAGAGATTTGCATCATCTTGGTCTTGCAAGCTTA 1377
Query 1412 CCATTATACAGATTGTTACTTAGAATGCATGAACATGCCAAAAGACCAGCTTATGATATC 1471
|| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 1378 CCGTTATATAGATTGTTACTTAGAATGCATGAACATGCCCAAAGACCAGCTTTTGACATC 1437
Query 1472 TATGAAATGATGAAGTTGGACAAA 1495
||||||||||||||||||||||||
Sbjct 1438 TATGAAATGATGAAGTTGGACAAA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5