BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27470.1
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489579 jgi|Araly1|489579|fgenesh2_kg.6__2713__AT5G27470.1 2431 0.0
Ahg942350 jgi|Araly1|942350|scaffold_602894.1 1421 0.0
Ahg314052 jgi|Araly1|314052|fgenesh1_pm.C_scaffold_1002832 981 0.0
Ahg331078 jgi|Araly1|331078|fgenesh1_pm.C_scaffold_8000421 713 0.0
> Ahg489579 jgi|Araly1|489579|fgenesh2_kg.6__2713__AT5G27470.1
Length=1573
Score = 2431 bits (1316), Expect = 0.0
Identities = 1498/1584 (95%), Gaps = 20/1584 (1%)
Strand=Plus/Plus
Query 34 CAAATTTCTGTGTCTGCTTTTGATTCACAGAGAAGGAGCAGGAAAGATGTTGGATATCAA 93
||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 1 CAAATTTCTGTTTCTGCTTTTGATTCACAGAGAAAGAGCCCGAAA-ATGTTGGATATCAA 59
Query 94 TCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGCAACGCCGGAG 153
||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 60 TCTATTTCGTGAAGAAAAAGGGAACAATCCGGAGATTATCAGAGAATCGCAACGCCGGAG 119
Query 154 ATTTGCCAGCGTTGAAATCGTCGATGAGATCATTAAGCTGGACAAGGAATGGCGTCAGCG 213
|||||||||||||||| |||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 120 ATTTGCCAGCGTTGAAGTCGTGGATGAGATCATTAAACTCGACAAAGAATGGCGTCAGCG 179
Query 214 TCAATTTGAAGTTGATAGCTTCA-GAAAGGAGTTCAACAAGCTCAATAAGCAAGTGGCGC 272
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 180 TCAATTTGAAGTTGATAGCTTCAGGAAA-GAGTTCAACAAGCTCAATAAGCAAGTGGCGC 238
Query 273 AGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAGAAAAACAAAC 332
||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct 239 AGCTCAAAATTAAAAAAGAAGATGCCACTGAGATTATTCAACAGACCGAGAAAAACAAAC 298
Query 333 AAGATTCTACTGCAAAGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT 392
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGATTCTACCGCAAAGGAGGCGGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT 358
Query 393 TGGAGCA-AGTTGGTAATTTGGTCCATGATTCTGTTCC-AGTTGATAAGGACGAGGCTAA 450
||||| | ||||||||| ||| | ||||| |||||||| | |||||||||||||||||||
Sbjct 359 TGGAG-ACAGTTGGTAACTTGATTCATGACTCTGTTCCTA-TTGATAAGGACGAGGCTAA 416
Query 451 TAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAA 510
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 TAATCTTGTCATTAAACTGTGGGGTGAAAAGCGGCTTTCTACGCCTGGTCTGAAGCTGAA 476
Query 511 AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT 570
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAACCATGTGGATCTCGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT 536
Query 571 CGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTAT 630
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 537 CGCTGGAGCCAGAGGCTTTTTCTTAAAAGGAGATGGATTGATGCTTAACCAAGCTCTTAT 596
Query 631 CAACTTTGGGTTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTT 690
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 CAACTTTGGGCTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAGCCTCCTTTTTT 656
Query 691 CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA 716
Query 751 CAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTG 810
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 CAAGGTGACTGGTGAAGGAGATGACAAATACCTTATTGCAACTGCTGAGCAGCCTCTTTG 776
Query 811 TGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA 870
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCATACCATCTTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA 836
Query 871 CTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTTCCG 930
||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 837 CTCGTCCTGCTTTAGAAAAGAAGCTGGTTCGCATGGAAGAGACACTCTTGGTATTTTCCG 896
Query 931 TGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTC 990
|||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||
Sbjct 897 TGTTCACCAGTTTGAGAAGATTGAACAGTTTTGCATCACCAGTCCTAATGAGAATGCCTC 956
Query 991 GTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGCTAAAACT 1050
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 957 GTGGGAAATGCTCGATGAGATGATGAAGAACTCAGAAGATTTTTACCAAGCGCTAAAGCT 1016
Query 1051 TCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAAAAGTA 1110
||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 1017 TCCATACCAAATCGTGTCGATAGTCTCTGGAGCATTGAACGATGCAGCAGCCAAAAAGTA 1076
Query 1111 CGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATTCAGGGAGCTTGTGTCTTGTTCCAA 1170
|| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 1077 TGACTTGGAAGCTTGGTTTCCTTCGTCGGAGACTTTCAGAGAGCTTGTGTCCTGTTCCAA 1136
Query 1171 CTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGTCAGAAAAAGAGCAATGA 1230
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1137 CTGTACAGACTACCAGGCTCGAAGGCTTGAGATTAGATACGGTCAGAAAAAGAGCAATGA 1196
Query 1231 GCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTACTGCAACAGAGAGGACCAT 1290
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 GCAGACAAAGCAGTATGTGCATATGCTGAATTCAACACTTACTGCAACAGAGAGGACCAT 1256
Query 1291 TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTGAGGTTCTGCA 1350
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1257 TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATCCCTGAGGTTCTGCA 1316
Query 1351 GCCGTTTATGGGCGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC 1410
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GCCGTTTATGGGTGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC 1376
Query 1411 CAAAGGGAAGAAATCGAAAGCTTGATTGATGTATTGATTCAGATTAACGACTCTTCTGTT 1470
||||||||||||||||||||||| |||| | |||| || |||||||||||||||||||
Sbjct 1377 CAAAGGGAAGAAATCGAAAGCTTAATTGTTATATT-AT---GATTAACGACTCTTCTGTT 1432
Query 1471 TTCTTGAAATTGATGAAACACTTCGATAAA-TTTCTTTACTTTGTGGAAtt-tttttGGA 1528
|||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 1433 TTCTTGAAATTGATGAAACACTTCGATAAAGTTTCTTTATTTTGTGGAATCGTTTTTGGA 1492
Query 1529 CTTC-TGTTATTTTACCAGGACCGTT-ATTTATCATCTGATTTCT-GCTAGTA-TTTGTT 1584
||| |||||||||||||||||| || |||||||||||||||||| | ||||| ||| ||
Sbjct 1493 -TTCCTGTTATTTTACCAGGACCTTTTATTTATCATCTGATTTCTTG-TAGTAGTTT-TT 1549
Query 1585 CCTTTTGTTTGGCGAATCATTGTT 1608
|||||| |||||||||||||||||
Sbjct 1550 CCTTTTCTTTGGCGAATCATTGTT 1573
> Ahg942350 jgi|Araly1|942350|scaffold_602894.1
Length=1346
Score = 1421 bits (769), Expect = 0.0
Identities = 1139/1316 (87%), Gaps = 32/1316 (2%)
Strand=Plus/Plus
Query 84 TGGATATCAATCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGC 143
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 22 TGGATATCAATCTATTTCGTGAAGAAAAAGGTAACAATCCAGAGATCATTAAAGAATCGC 81
Query 144 AACGCCGGAGATTTGCCAGCGTTGAAATCGTCGATGAGATCATT-AAGCTGGACAAGGAA 202
|||||||||||||| ||| ||||| | || || ||||| ||| ||| | ||||| |||
Sbjct 82 AACGCCGGAGATTTTCCAATGTTGATGTTGTTGACGAGATTATTCAAG-TTGACAAAGAA 140
Query 203 TGGCGTCAGCGTCAATTTGAAGTTGATAGCTTCAGAAAGGAGTTCAACAAGCTCAATAAG 262
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 141 TGGCGTCAGCGTCAATTTGAAGTTGATAGCTTCAGAAACGAGTTCAACAAGCTGAATAAA 200
Query 263 CAAGTGGCGCAGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAG 322
|| ||||| ||||| |||||| |||| ||||||| |||||||||||| ||||| |||
Sbjct 201 CACGTGGCTCAGCTAAAAATTGCTAAAGCTGATGCGACTGAGATTATTCAGCAAACAGAG 260
Query 323 AAAAACAAACAAGATTCTACTGCAA-AGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTT 381
||||||||||| || |||| || | || ||| ||||||||||||||||| |||| ||||
Sbjct 261 AAAAACAAACAGGACGCTACCGCGAGAG-AGGTTGAAGTTCGTGAAGCTTTTGCTACTTT 319
Query 382 GAAAGCCAAGTTG--GAGCAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAG 439
| ||||||| ||| || || |||| ||| |||| ||||| || |||||| ||||||||
Sbjct 320 GCAAGCCAAATTGTTGA-CAT-TTGGAAATCTGGTTCATGACTCGGTTCCATTTGATAAG 377
Query 440 GACGAGGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGT 499
|||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 378 GACGAGGCAAATAATCTTGTGATTAAACTGTTCGGTGAAAAGCGGTTTTCTACACCTGAT 437
Query 500 CTGAAGCTGAAAAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGA 559
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 438 CTGAAGCTGAAAAACCATGTGGATCTCGTTGAGCTTCTCGGTATTGCAGATACCAAAAGA 497
Query 560 GGTGCTGAAATCGCTGGAGCAAGAGGCTT-TTTCTTGAAAGGAGATGGTTTGATGCTTAA 618
|||||||| || ||||||| ||||| || |||||| |||||| |||| ||| ||||||
Sbjct 498 GGTGCTGATATTGCTGGAGGGAGAGG-TTATTTCTTAAAAGGATTTGGTGTGAGGCTTAA 556
Query 619 CCAAGCTCTTATCAACTTTGGGTTA-ACTTTCTTGAAAAAGAGAGGATTCACAGGATTG- 676
|||||||||||||||||||| | || ||| | ||| || | |||||||| || | ||
Sbjct 557 CCAAGCTCTTATCAACTTTGCGCTAGACTCT-TTGGAAGATAGAGGATTTAC-GCCTTTA 614
Query 677 CAACCTCCTTTTTTCATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTC 736
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 615 CAACCTCCGTTTTTCATGAGGAAGGATGTTATGGCCAAATGCGCACAATTGGCTCAGTTT 674
Query 737 GATGAAGAGCTTTACAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCT 796
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 675 GATGAAGAGCTTTACAAGGTGACTGGTGAAGGAGATGACAAGTTTCTTATTGCAACTGCT 734
Query 797 GAGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTA 856
||||| ||||||||||| |||||| | || || ||| |||||| | ||||||||| |
Sbjct 735 GAGCAACCTCTTTGTGCATACCATCGTAATCAAACGATCCATCCGTCCGAGCTTCCCAAA 794
Query 857 AGATATGCTGGTTACTC-ATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACAC 915
||||||||||||||||| | |||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 795 AGATATGCTGGTTACTCGA-CCTGTTTTAGAAAAGAAGCTGGTTCTCATGGAAGAGATAC 853
Query 916 CCTTGGTATTTTCCGTGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGC-C 974
||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 854 ACTTGGCATTTTCCGTGTTCACCAGTTTGAGAAAGTTGAACAGTTTTGCATCAC-GGCTC 912
Query 975 CTAACGAGAATGCCTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTT 1034
|||| || | ||||||| ||||||||| |||||| | |||||||| ||||| ||||
Sbjct 913 CTAATGA---T---TCGTGGGCAATGCTCGAAGAGATGTTAAAGAACTCGGAAGAATTTT 966
Query 1035 ACCAAGCGCT-AAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGAT 1093
|||||||||| |||| ||||||||| | |||| ||| | ||||||||||| ||||| |||
Sbjct 967 ACCAAGCGCTTAAAA-TTCCATACCGAGTCGTTTCGGTTGTCTCTGGAGCTTTGAACGAT 1025
Query 1094 GCAGCTGCGAAAAAGTACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATT-CAGGGA 1152
||||| || |||||||| || |||||| ||||||||| | || ||||| || ||| ||
Sbjct 1026 GCAGCGGCTAAAAAGTATGACCTGGAAGGATGGTTTCCTGCTTCAGAGAC-TTACAGAGA 1084
Query 1153 GCTTGTGTCTTGTTCCAACTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGG 1212
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1085 GCTTGTGTCCTGTTCCAACTGTACAGACTACCAGGCTCGAAGGCTTGAGATTAGATATGG 1144
Query 1213 TCAGAAAAAGAGCAATGAGCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTAC 1272
|||||| |||||||| || ||||| ||||||||||| |||||| |||||||||| |||||
Sbjct 1145 TCAGAATAAGAGCAAAGATCAGACGAAGCAGTATGTTCATATGTTGAATTCGACTCTTAC 1204
Query 1273 TGCAACAGAGAGGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGA 1332
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1205 CGCAACAGAGAGGACAATTTGCTGCATTCTTGAGAACTACCAGCGAGAGGATGGTGTTGA 1264
Query 1333 CATTCCTGAGGTTCTGCAGCCGTT-TATGGGCGG-AGAGACGTTTTTGCCTTTCAA 1386
|||||||| ||||||||||| || ||||||||| | ||| |||| ||||||||||
Sbjct 1265 TATTCCTGACGTTCTGCAGCC-TTATATGGGCGGCA-AGAAGTTTATGCCTTTCAA 1318
> Ahg314052 jgi|Araly1|314052|fgenesh1_pm.C_scaffold_1002832
Length=1326
Score = 981 bits (531), Expect = 0.0
Identities = 1062/1310 (81%), Gaps = 69/1310 (5%)
Strand=Plus/Plus
Query 119 AATCCGGAGATTATCCGAGA-ATCGCAACGCCGGAGATTTGCCAGCGTTGAAATCGTCGA 177
||||||||||| |||||||| | | |||||||||| |||||||||||| ||| | || ||
Sbjct 28 AATCCGGAGATCATCCGAGAGA-CTCAACGCCGGAAATTTGCCAGCGTCGAAGTTGTTGA 86
Query 178 TGAGATCATTAAGCTGGA-CAAGGAATGGCGTCAGCGTCAATTTGAAGT-TGATAGCT-T 234
||||| || | || || ||| | ||||||||| ||| ||| |||| | |||| | |
Sbjct 87 GGAGATAATCATTCTCGACCAA-GTATGGCGTCAACGTAAATATGAA-TATGATTG-TGC 143
Query 235 CAGAAAGGAGTTCAACAAGCTCAATAAGCAAGTGGCGC-AGCTCAAAATTAAAAAAGAAG 293
| |||| || ||||| ||| | || ||| ||||||| | ||||||||||| | | |
Sbjct 144 CCGAAAAGACTTCAATAAGATTAACAAGGAAGTGGC-CAAGCTCAAAATTTCTGATGCTG 202
Query 294 ATGCGAGTGAGATTATTCAACAAACTGAGAAAAACAAACAAGATTCTACTGCAA--AGGA 351
|||||| ||||| ||||| ||| | |||| | ||||||||| | ||| ||| | ||
Sbjct 203 ATGCGACTGAGAAGATTCAGCAAGCAGAGATTATCAAACAAGAATGTAC--CAAGTATGA 260
Query 352 GGCTGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGC-CAAGT-TGGAGCAAGTTGGTAAT 409
||| ||||||||||||||||||||||||||| |||| || | |||| ||| | || |||
Sbjct 261 GGCGGAAGTTCGTGAAGCTTATGCTGCTTTGGAAGCTAAATTGTGGA-CAA-TGGGAAAT 318
Query 410 TTGGTCCATGATTCTGTTCCAGTTGA-TAAGGACGAGGCTAATAATCT-TGTGATTAAAC 467
| ||||||| || |||||| || | ||| |||||||| |||||||| | || |||||
Sbjct 319 CTCATCCATGACTCGGTTCCAATT-AGTAACGACGAGGCAAATAATCTCT-TGGTTAAAG 376
Query 468 TGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAA-AAACCATGTGGATCTT 526
| | ||||||| |||| || || | ||||||| | |||| || ||||||| |||||||
Sbjct 377 TTTCGGGTGAACCGCGGGTTGCTTCACCTGGTCAGGAGCT-AACAAACCATATGGATCTC 435
Query 527 GTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAA-TCGCTGGAGCAAGAGG 585
|||||| |||||| ||||| ||||||||| ||||||||| ||| | || |||| ||||||
Sbjct 436 GTTGAGTTTCTCGATATTGTAGATACCAAGAGAGGTGCT-AAAGTTGCCGGAGGAAGAGG 494
Query 586 CT-TTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTATCAACT-TTGGGTTA 643
|| ||||| | |||||| |||| || | |||||||||||||||||||||| || |||
Sbjct 495 CTATTTTC-TAAAAGGATATGGCGTGCTCCTTAACCAAGCTCTTATCAACTATT-CTTTA 552
Query 644 ACTTTCTTGA-AAAAGAGAGGATTCACAGGAT-TGCAACCT-CCTTTTTTCATGAGGAAG 700
| ||||| | |||||| || |||| || | | | |||||| | | | |||||| ||||
Sbjct 553 GCCTTCTT-ACAAAAGAAAGAATTCTCA-GTTATACAACCTAAC-TGTCTCATGACGAAG 609
Query 701 G-ATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGGTGAC 759
| || ||||||||||||||||||||| ||||||| |||||||| || |||||||||||
Sbjct 610 GAAT-CCATGGCCAAGTGCGCACAATTGTCACAGTTTGATGAAGAACTCTACAAGGTGAC 668
Query 760 TGGT----G-AA-GG--A-GATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTG 810
|||| | || || | ||||| |||| ||| ||||||||||||||||| ||||||||
Sbjct 669 TGGTGAAGGAAAGGGAAATGATGAAAAATTCCTTATTGCAACTGCTGAGCAACCTCTTTG 728
Query 811 TGCGTACCAT-ATTGATGAATGGATT-CATCCGACTGAGCTTCCCCTAAGATATGCTGGT 868
||| | ||| | | ||||||| || |||||||| ||||||||| ||||||||||||||
Sbjct 729 TGCACAACATCA-AGGTGAATGG-TTCCATCCGACCGAGCTTCCCATAAGATATGCTGGT 786
Query 869 TACTC-ATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTT 927
||||| | ||||||||||||||||||| ||||| || |||||||| || ||||| |||||
Sbjct 787 TACTCGA-CCTGCTTTAGAAAAGAAGCTGGTTCCCACGGAAGAGATACTCTTGGCATTTT 845
Query 928 CCGTGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGC 987
|||||||||||||||||||||| | ||||||||||||||||| || ||| | |||
Sbjct 846 CCGTGTTCACCAGTTTGAGAAAGTCGAACAGTTTTGCATCACGGGTCCT-----G-ATGA 899
Query 988 CTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGC-TAA 1046
|||||||||||||| || |||||| |||||||||| ||||| ||||||||| ||| |||
Sbjct 900 TTCGTGGGAAATGCTTGAAGAGATGCTGAAGAACTCGGAAGAGTTTTACCAATCGCTTAA 959
Query 1047 AACTTCCATACCAAATCGTCTCGA-TCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAA 1105
|| ||||||||| | |||| || | | ||||||||||| ||||| ||||||||||| |||
Sbjct 960 AA-TTCCATACCGAGTCGTGTC-AGTTGTCTCTGGAGCTTTGAACGATGCAGCTGCAAAA 1017
Query 1106 AAGTACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATT-CAGGGAGCTTGTGTCTTG 1164
||||| || ||||||| ||||||||| |||| | ||| || ||| ||||| ||||| ||
Sbjct 1018 AAGTATGACTTGGAAGGATGGTTTCCTGCGTCAGGGAC-TTACAGAGAGCTCGTGTCCTG 1076
Query 1165 TTCCAACTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGTCAGAAAAAGAG 1224
|||||||||||||||||| ||| |||| || ||| | || ||||| ||| | ||||||||
Sbjct 1077 TTCCAACTGTACAGACTATCAGTCTCGAAGACTTAACATTAGATATGGTTACAAAAAGAG 1136
Query 1225 CAATGAGCAGACAAAGCAGTATGTGCATATGCTGAATTCGACAC-TTACTGCAACAGAGA 1283
|||| || |||| | | ||||||||||||||||||||||||| | || | || ||| |||
Sbjct 1137 CAATCAGGAGACGAGGAAGTATGTGCATATGCTGAATTCGACTCTTTGC-GCGACACAGA 1195
Query 1284 GGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTGAGG 1343
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1196 GGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGATGATGGTGTGGACATCCCTGAGG 1255
Query 1344 TTCTGCAGCCGTTT-ATGGGCGGAGAGACGTTTTTGCCTTTCAAGGCCAA 1392
||||||| || ||| |||| ||||| || |||||||||||||||| ||||
Sbjct 1256 TTCTGCAACC-TTTCATGGCCGGAGTGAAGTTTTTGCCTTTCAAGACCAA 1304
> Ahg331078 jgi|Araly1|331078|fgenesh1_pm.C_scaffold_8000421
Length=1320
Score = 713 bits (386), Expect = 0.0
Identities = 647/768 (84%), Gaps = 38/768 (5%)
Strand=Plus/Plus
Query 642 TAACTTTCTTGAA-AAAGAGAGGATTCACA-GGATTGCAACCTCCTTTT-TTCATGAGGA 698
|||| ||||| || ||||| ||| |||||| | | | |||||| |||| || |||||||
Sbjct 533 TAACCTTCTT-AACAAAGAAAGGTTTCACATGTA-TACAACCTAATTTTCTT-ATGAGGA 589
Query 699 AGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGGTGA 758
|||| || |||| ||||||||||||||| | || || |||||||| || ||||||||||
Sbjct 590 AGGAGGTCATGGAAAAGTGCGCACAATTGTCGCAATTTGATGAAGAACTATACAAGGTGA 649
Query 759 CTGGTGAA-G-G---A-GATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTGTG 812
||||||| | | | ||||| |||||||| ||||||||| ||||||| ||||||||||
Sbjct 650 TTGGTGAAGGAGATCATGATGAGAAATACCTTATTGCAACTTCTGAGCAACCTCTTTGTG 709
Query 813 CGTACCAT-ATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTAC 871
| |||||| | |||||||||| || || | |||||||||| |||||||||| ||||||
Sbjct 710 CTTACCATCA-AAATGAATGGATCCAACCTAGTGAGCTTCCCATAAGATATGCAGGTTAC 768
Query 872 TC-ATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTTCCG 930
|| | | |||||| |||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 769 TCGA-CTTGCTTTCGAAAAGAAGCCGGTTCCCATGGAAGAGATACACTTGGCATTTTCCA 827
Query 931 TGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTC 990
|||||| |||||||||||| ||||||||||||||||||| | ||||| | || ||
Sbjct 828 TGTTCATCAGTTTGAGAAAGTTGAACAGTTTTGCATCACAAGTCCTAA--TG-AT---TC 881
Query 991 GTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGCT-AAAAC 1049
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 882 TTGGGAAATGCTCGATGAGATGATGAAGAACTCAGAAGATTTTTACCAATCGCTTAAAA- 940
Query 1050 TTCCATACCAAATCGTCTCG-ATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAAAAG 1108
||||||||| | | || ||| || ||||||||||| ||||| |||||||||| ||||||
Sbjct 941 TTCCATACCGAGTTGTGTCGGAT-GTCTCTGGAGCTTTGAACAATGCAGCTGCTAAAAAG 999
Query 1109 TACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACAT-TCAGGGAGCTTGTGTCTTGTTC 1167
|| || ||||||| |||||||||||||| ||||| | | || ||||||||||| |||||
Sbjct 1000 TATGACTTGGAAGGATGGTTTCCTTCGTCAGAGACTTAT-AGAGAGCTTGTGTCCTGTTC 1058
Query 1168 CAACTGTACAGACTACCAGGCTCGCAGGCTT-GAGATCAGATACGGTCAGAAAAAGAGCA 1226
||||||||||||||| ||| |||| |||||| | ||||||||||||||| ||||||||||
Sbjct 1059 CAACTGTACAGACTATCAGTCTCGAAGGCTTCG-GATCAGATACGGTCATAAAAAGAGCA 1117
Query 1227 ATGA---GCAGACAAAG--CA-GTATGTGCATATGCTGAATTCGACACTTACTGCAACAG 1280
|||| |||||| ||| || |||||| ||||||||||||||||| ||||| || |||
Sbjct 1118 ATGATCAGCAGACTAAGAACAAGTATGTCCATATGCTGAATTCGACCCTTACCGCGACAC 1177
Query 1281 AGAGGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTG 1340
||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1178 AGAGGACTATTTGTTGTATTCTTGAGAACTACCAGCGAGAGGATGGTGTGGACATCCCTG 1237
Query 1341 AGGTTCTGCAGCCGTTT-ATGGGCGGAGAGACGTTTTTGCCTTTCAAG 1387
||||||| || || ||| ||||| |||| |||||||||||||||||||
Sbjct 1238 AGGTTCTTCAACC-TTTCATGGGGGGAGTGACGTTTTTGCCTTTCAAG 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62620362780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5