BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27490.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489578 jgi|Araly1|489578|fgenesh2_kg.6__2712__AT5G27490.1 1458 0.0
> Ahg489578 jgi|Araly1|489578|fgenesh2_kg.6__2712__AT5G27490.1
Length=1028
Score = 1458 bits (789), Expect = 0.0
Identities = 872/911 (96%), Gaps = 9/911 (1%)
Strand=Plus/Plus
Query 37 GCTGTGAGAAAGAGAAAAAGAAGAACGAAGATGATGATGTCCGGTGGAAGCTACACGAAC 96
|||||||| ||||| |||||||||| | || ||||||||||||||| ||||||||||||
Sbjct 21 GCTGTGAG-AAGAG-AAAAGAAGAA-G--GAAGATGATGTCCGGTGGGAGCTACACGAAC 75
Query 97 ATCGATCACCAGAAAGTTTCTGGATCTGTACCCGCTGTTCCAGATCCTGGACATGTCACC 156
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 76 ATCGATCACCAGAAAGTTTCTGGATCTGTACCCGCCGTTCCAGATCCTGGCCATGTCACC 135
Query 157 GTCAAATTCGCAGACTCAAATCTACAAACGTTTCCTCCATCTGCTACTCAGGGAAAGATT 216
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GTCAAATTCGCTGACTCAAATCTACAAACGTTTCCTCCATCTGCTACTCAGGGAAAGATT 195
Query 217 TCTGGTGGTACTAATCCTCCTCGAGATGCTGACGATACATTTTCGAGGCCTGTGAATGGT 276
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 196 TCTGGTGGTACTAATCCTCCTCGAGATGCTGACGATACATTTTCGAGGCCCGTGAATGG- 254
Query 277 ACTACAGATGAACCTCAGTCTAGTGGTTGGCTTCATAGATTCACTGTTGGTGCTTACAAG 336
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 255 --TACAGATGAACCTCAGTCTGGTGGTTGGCTCCATAGATTCACTGTTGGTGCTTACAAG 312
Query 337 CCTTACTTTGATGTGGACACTTCAGATGTCGTAGAGAGACTCAAAGAATCGCTCTTTCCG 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CCTTACTTTGATGTGGACACTTCAGATGTCGTAGAGAGACTCAAAGAATCGCTCTTTCCG 372
Query 397 TTTAGAGGAACATTTACGGAAAAGACAGCCAACAACCCTGATTTGTACGGGCCATTCTGG 456
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 373 TTCAGAGGAACATTTACAGAAAAGACAGCCAACAACCCTGATTTATACGGGCCATTCTGG 432
Query 457 ATATGCACAACATTGATCTTTGTAGCAGCATCCATAGGAACATTTGTTACATACATAGCA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATATGCACAACATTGATCTTTGTAGCAGCATCCATAGGAACATTTGTTACATACATAGCA 492
Query 517 CACAAATTGAAGAAACAGGAATGGAACTACGATATTAATCTGGTGACTTGGTCTGCAGGA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CACAAATTGAAGAAACAGGAATGGAACTACGATATTAATCTGGTGACTTGGTCTGCAGGA 552
Query 577 GTTTTCTACGGTTATGTAACTATTGTCCCTCTCGCATTATACGTTGTTCTCAAGTACTTC 636
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 553 GTGTTCTACGGTTATGTAACTATTGTCCCTCTCGCATTATATGTGGTTCTCAAGTACTTC 612
Query 637 TCTGCACCATCAGGCTTAGTCCAACTCTTCTGTCTATACGGATATTCCCTATTCGTCTTC 696
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 613 TCTGCACCATCAGGCTTAGTCCAACTCTTCTGTCTCTACGGATATTCCTTATTCGTCTTC 672
Query 697 ATCCCTGCATTGTGTCTCTCTGTTGTGCCATTAGAGATCTTCAGATGGGTTATTGCGGGT 756
||||||||||||||||| || ||||||||| ||||||||||||||||||| || ||||||
Sbjct 673 ATCCCTGCATTGTGTCTATCCGTTGTGCCACTAGAGATCTTCAGATGGGTGATCGCGGGT 732
Query 757 TTAGCTGGATTCATGTCTGCTACATTTGTAGCATTGAATCTCAAAGCACATATTAACTCT 816
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 733 TTAGCTGGATTCATGTCTGCAACATTTGTGGCATTGAACCTCAAAGCACATATTAACTCT 792
Query 817 GCAGGAGAGAGATGGTTCTTGATTGTGGTCAGCATATTTCTTCTACAGCTCGCTCTCTCA 876
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 793 GCAGGAGAGAGATGGTTCTTGATTGTAGTCAGCATTTTTCTTCTACAGCTCGCGCTTTCA 852
Query 877 GTAGTGCTGAAGCTATATCTGTTCACTGTCACCGTATAAATTATTCCCTCAGGGG-AAGA 935
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 853 GTCGTGCTGAAGCTATATCTGTTCACTGTCACCGTATAAATTATTCCCTCAGGGGGAAGA 912
Query 936 AGCTATGtttt 946
||||||| |||
Sbjct 913 AGCTATGATTT 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5