BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27495.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326953 jgi|Araly1|326953|fgenesh1_pm.C_scaffold_6002173 250 4e-66
> Ahg326953 jgi|Araly1|326953|fgenesh1_pm.C_scaffold_6002173
Length=237
Score = 250 bits (135), Expect = 4e-66
Identities = 212/247 (86%), Gaps = 14/247 (6%)
Strand=Plus/Plus
Query 4 ATGACTATTAGCAAGAAAATGTTAATCGTGTTTGTCCTGACTATCTTCGTTG---TATCT 60
||||||| ||||||||||||||| ||||| |||||||| |||||| || ||| |||||
Sbjct 1 ATGACTACTAGCAAGAAAATGTTGATCGTATTTGTCCTTACTATCCTCTTTGTCATATCT 60
Query 61 TTTGGTCATTGCTCTGATAGTTTTCCTGGT-TTAGGATTAAAGAAGCAAGCACATAAACA 119
| || ||||||||||||||| || |||| || ||| | | ||| ||| |||||
Sbjct 61 TCTGTTCATTGCTCTGATAGCACTCTTGGTCTT-GGA--ATA-AAG-AAG-----AAACA 110
Query 120 ATGCTACAGTCCAGACCTGTGTACGGGAGGAGACAGCAAATGTGATATATGTTGTGTTCT 179
||||||||||||||| ||||||| |||||| ||| || ||||||||||||||||||||||
Sbjct 111 ATGCTACAGTCCAGATCTGTGTAAGGGAGGGGACGGCGAATGTGATATATGTTGTGTTCT 170
Query 180 TATAAGTGGTGTATACTACGGTAAATGTATTCAAAGCAAATGTCATTGTTTGAATAAGAC 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 171 TACAAGTGGTGTATACTACGGTAAATGTATTCAAAGCAAATGTCATTGTTTGATTAAGAC 230
Query 240 TAAATAA 246
| |||||
Sbjct 231 TGAATAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5