BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27510.1 Length=906 Score E Sequences producing significant alignments: (Bits) Value Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1 1227 0.0 > Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1 Length=906 Score = 1227 bits (664), Expect = 0.0 Identities = 822/900 (91%), Gaps = 4/900 (0%) Strand=Plus/Plus Query 9 AAACGAAGAATACGTCAAGTTTTTAGGTGAAGGTGCTTATAGTTTCGTTGATCTCTTCAA 68 ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 9 AAACGAAGAATACATCAAGTTTTTAGGTGAAGGTGCTTACAGTTTTGTTGATCTCTTCAA 68 Query 69 GTACACAAAAAGCGACGGCTCTTCTTTTCACGCCGCCGTAAAAAGCTCCGATGATGAAAA 128 |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| | Sbjct 69 GTACACAAAAAGCGACGGCTCTTCGTTTCTCGCCGCCGTAAAAAGCTCCGATGAAGAAGA 128 Query 129 CTCTCTCCTTAAAGA-ATTTCATATTCTTTCCGAACTCAAAGGATGTCCAAGAATCATAC 187 ||||||||||| ||| | ||| |||||||||||||||| ||||||||| |||||||||| Sbjct 129 CTCTCTCCTTACAGAGA-TTCGGATTCTTTCCGAACTCAGAGGATGTCCGAGAATCATAC 187 Query 188 AATGCTTTGGTAACGACTTGGAAGAGGGTTTCGACGATAAAGGAAACAGAGTCTACAAGT 247 ||| |||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 188 AATACTTTGGTAACGATTTGGAAGAGGGTTTTGACTATAAGGGAAACAGAGTCTACAAGT 247 Query 248 TGCTTCTCGAGTACGCATCCGAAGGTAGTTTAAGCGATTTCATGAACAATTGCGTGGATA 307 ||||||| ||||||||| |||||||||||||||||||||||||||| |||| | |||| Sbjct 248 TGCTTCTTGAGTACGCAACCGAAGGTAGTTTAAGCGATTTCATGAATAATTACACAGATA 307 Query 308 GAAAGTTACCAGACTTGATGATTAGAGACTTCACGCGTATGATTCTCCAAGGTTTGGTAT 367 |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 308 GAAAATTACCAGACTTGATGATAAGAGACTTCACGCGTATGATTCTCGAAGGTTTGGTAT 367 Query 368 CGATTCATAGCCACGGTTATGTTCATTGCGATCTCAAGCCAGAAAATGTCCTTGTCTTCC 427 | |||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| Sbjct 368 CAATTCATAGCCACGGTTATGTTCATTGTGATCTCAAGTCAGATAATCTCCTTGTCTTCA 427 Query 428 CTTGTGGAGATTCTTACGAAGTGAAGATTTCTGATTTTGGACTCTCATTACAAGTCGGAG 487 ||| |||||||||||||| |||||||||||||||||||| |||| ||| ||||||||| Sbjct 428 AGTGTAGAGATTCTTACGAATTGAAGATTTCTGATTTTGGAATCTCGTTAGAAGTCGGAG 487 Query 488 AAGTTCCTGATCACTGGAAAATCGAATACCCGTTTGTTGGAACGCTTAACTACATGCCTC 547 || |||||||||||||||||||||||||||| ||||||||||| | ||| |||||||| | Sbjct 488 AAATTCCTGATCACTGGAAAATCGAATACCCTTTTGTTGGAACCCCTAATTACATGCCGC 547 Query 548 CGGAGTCTCTACATGACGGTGTTGCCAATAAAACCCTAGATTTGTGGTCATTAGGGTGTT 607 |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 548 CGGAGTCTCTTCAAGACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCATTAGGGTGTT 607 Query 608 TAGTGTTGGAGATGTATGTGTGTAAGAAGCCATGGATAGGGTTTA-TACCTGAGGATTTT 666 |||||||||||||||||||| |||||||||||||| ||||||||| | ||||| |||||| Sbjct 608 TAGTGTTGGAGATGTATGTGGGTAAGAAGCCATGGCTAGGGTTTAAT-CCTGACGATTTT 666 Query 667 GTGTATATCCTCTCTAATGGTAACCCTCCAGAGATTCCCGAGAGTTTGCCTTGCGACGCA 726 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 667 GTGTCTATCCTCTCTAATGGTAATGCTCCAGAGATTCCCGAGAGTTTGCCTTGCGATGCA 726 Query 727 AGGGCGTTTATTCAAAAGTGTTTCTCAAGGAACCCTAAGGAGAGAGGTACTGCGTCTGAG 786 |||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| Sbjct 727 AGGGAGTTTATTCAAACGTGTTTCGCAAGGAACCCTAAGGAGAGAGGTACTGCCTCTGAG 786 Query 787 CTGCTGTCTCATCGGTTTTTGCGTCAAGAAAAATCGAAATTGAAGATGATTTCTCCATTC 846 ||||||||||||||||||||||||| || ||||| ||||| |||||||| | ||||||| Sbjct 787 CTGCTGTCTCATCGGTTTTTGCGTCGAGGAAAATGGAAATCGAAGATGACTACTCCATTT 846 Query 847 AACCTGCTAAAGTTTAAGAAATTTTTAAACAAGCTCTTGAGGTTGAAGAATTTCCTCTGA 906 |||| ||| |||||||| ||| ||||||| || |||||||||||||||||||||||||| Sbjct 847 AACCGGCTTAAGTTTAATAAAATTTTAAATAAATTCTTGAGGTTGAAGAATTTCCTCTGA 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33586289877 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5