BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27510.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1 1227 0.0
> Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1
Length=906
Score = 1227 bits (664), Expect = 0.0
Identities = 822/900 (91%), Gaps = 4/900 (0%)
Strand=Plus/Plus
Query 9 AAACGAAGAATACGTCAAGTTTTTAGGTGAAGGTGCTTATAGTTTCGTTGATCTCTTCAA 68
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 9 AAACGAAGAATACATCAAGTTTTTAGGTGAAGGTGCTTACAGTTTTGTTGATCTCTTCAA 68
Query 69 GTACACAAAAAGCGACGGCTCTTCTTTTCACGCCGCCGTAAAAAGCTCCGATGATGAAAA 128
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |
Sbjct 69 GTACACAAAAAGCGACGGCTCTTCGTTTCTCGCCGCCGTAAAAAGCTCCGATGAAGAAGA 128
Query 129 CTCTCTCCTTAAAGA-ATTTCATATTCTTTCCGAACTCAAAGGATGTCCAAGAATCATAC 187
||||||||||| ||| | ||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 129 CTCTCTCCTTACAGAGA-TTCGGATTCTTTCCGAACTCAGAGGATGTCCGAGAATCATAC 187
Query 188 AATGCTTTGGTAACGACTTGGAAGAGGGTTTCGACGATAAAGGAAACAGAGTCTACAAGT 247
||| |||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 188 AATACTTTGGTAACGATTTGGAAGAGGGTTTTGACTATAAGGGAAACAGAGTCTACAAGT 247
Query 248 TGCTTCTCGAGTACGCATCCGAAGGTAGTTTAAGCGATTTCATGAACAATTGCGTGGATA 307
||||||| ||||||||| |||||||||||||||||||||||||||| |||| | ||||
Sbjct 248 TGCTTCTTGAGTACGCAACCGAAGGTAGTTTAAGCGATTTCATGAATAATTACACAGATA 307
Query 308 GAAAGTTACCAGACTTGATGATTAGAGACTTCACGCGTATGATTCTCCAAGGTTTGGTAT 367
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 308 GAAAATTACCAGACTTGATGATAAGAGACTTCACGCGTATGATTCTCGAAGGTTTGGTAT 367
Query 368 CGATTCATAGCCACGGTTATGTTCATTGCGATCTCAAGCCAGAAAATGTCCTTGTCTTCC 427
| |||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||
Sbjct 368 CAATTCATAGCCACGGTTATGTTCATTGTGATCTCAAGTCAGATAATCTCCTTGTCTTCA 427
Query 428 CTTGTGGAGATTCTTACGAAGTGAAGATTTCTGATTTTGGACTCTCATTACAAGTCGGAG 487
||| |||||||||||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 428 AGTGTAGAGATTCTTACGAATTGAAGATTTCTGATTTTGGAATCTCGTTAGAAGTCGGAG 487
Query 488 AAGTTCCTGATCACTGGAAAATCGAATACCCGTTTGTTGGAACGCTTAACTACATGCCTC 547
|| |||||||||||||||||||||||||||| ||||||||||| | ||| |||||||| |
Sbjct 488 AAATTCCTGATCACTGGAAAATCGAATACCCTTTTGTTGGAACCCCTAATTACATGCCGC 547
Query 548 CGGAGTCTCTACATGACGGTGTTGCCAATAAAACCCTAGATTTGTGGTCATTAGGGTGTT 607
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 548 CGGAGTCTCTTCAAGACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCATTAGGGTGTT 607
Query 608 TAGTGTTGGAGATGTATGTGTGTAAGAAGCCATGGATAGGGTTTA-TACCTGAGGATTTT 666
|||||||||||||||||||| |||||||||||||| ||||||||| | ||||| ||||||
Sbjct 608 TAGTGTTGGAGATGTATGTGGGTAAGAAGCCATGGCTAGGGTTTAAT-CCTGACGATTTT 666
Query 667 GTGTATATCCTCTCTAATGGTAACCCTCCAGAGATTCCCGAGAGTTTGCCTTGCGACGCA 726
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 667 GTGTCTATCCTCTCTAATGGTAATGCTCCAGAGATTCCCGAGAGTTTGCCTTGCGATGCA 726
Query 727 AGGGCGTTTATTCAAAAGTGTTTCTCAAGGAACCCTAAGGAGAGAGGTACTGCGTCTGAG 786
|||| ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 727 AGGGAGTTTATTCAAACGTGTTTCGCAAGGAACCCTAAGGAGAGAGGTACTGCCTCTGAG 786
Query 787 CTGCTGTCTCATCGGTTTTTGCGTCAAGAAAAATCGAAATTGAAGATGATTTCTCCATTC 846
||||||||||||||||||||||||| || ||||| ||||| |||||||| | |||||||
Sbjct 787 CTGCTGTCTCATCGGTTTTTGCGTCGAGGAAAATGGAAATCGAAGATGACTACTCCATTT 846
Query 847 AACCTGCTAAAGTTTAAGAAATTTTTAAACAAGCTCTTGAGGTTGAAGAATTTCCTCTGA 906
|||| ||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 847 AACCGGCTTAAGTTTAATAAAATTTTAAATAAATTCTTGAGGTTGAAGAATTTCCTCTGA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5