BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27520.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489576 jgi|Araly1|489576|fgenesh2_kg.6__2710__AT5G27520.1 2039 0.0
Ahg477817 jgi|Araly1|477817|fgenesh2_kg.3__518__AT3G05290.1 965 0.0
> Ahg489576 jgi|Araly1|489576|fgenesh2_kg.6__2710__AT5G27520.1
Length=1328
Score = 2039 bits (1104), Expect = 0.0
Identities = 1269/1346 (94%), Gaps = 22/1346 (2%)
Strand=Plus/Plus
Query 17 TGTTTAAAATCCCAAGACGAAAATCATTCTCTTGTGATCGCCCATACCATCAATTATCAT 76
||||||||||||||||||| ||| || || ||||||| ||||||||||| ||| || |
Sbjct 1 TGTTTAAAATCCCAAGACGGAAA-CA--CT-TTGTGAT--CCCATACCATC-ATT-TC-T 51
Query 77 TTCTCTCTTCgaagaagaagaagaagaagaagaTATGGGTGTTGATTTGGATTTGGAATC 136
||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 52 CTCT-TGGAAGAAGAAGAAAAAGAAGAAGAAGATATGGGTGTTGATTTGGATTTGGAATC 110
Query 137 CATCTCCGAAGCCACCTCCGGAGCCATTGGATCTCTTCTCAGCACCACCATTTTATACCC 196
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 111 TATCTCCGAAGCCACCTCCGGAGCTATTGGATCTCTTCTCAGCACTACCATTTTATACCC 170
Query 197 TCTTGATACCTGTAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGTCAGCAGAAATA 256
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 171 TCTTGATACCTGCAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGTCAGCAAAAATA 230
Query 257 CAGATATCTGTCAGATGTGTTTTGGGAAGCAATTTCATCAGGAAATGTTCTCTCCTTGTA 316
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CAGATACCTGTCAGATGTGTTTTGGGAAGCAATTTCATCAGGAAATGTTCTCTCCTTGTA 290
Query 317 TCAAGGCCTTGGGACTAAGAATTTGCAGTCTTTTATTTCGTCCTTCATCTATTTCTATAG 376
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 291 TCAAGGCCTTGGGACTAAGAATTTGCAGTCCTTTATTTCGTCCTTCATCTATTTCTATAG 350
Query 377 TTATAGCTATTTCAAGAGGTTACATTCCCAAAGGATTGGTTCTAAGTCTATTGGAACAAA 436
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 351 TTATAGCTATTTCAAGAGGTTACATTCTCAAAGGATTGGTTCTAAGTCGATTGGAACAAA 410
Query 437 GGCTAATCTCCTCATTGCTGCTGCTGCTGGTGCTTGTACCTCTGTTTTGACTCAACCTCT 496
||| ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 411 GGCAAATCTGCTCATTGCTGCTGCTGCTGGGGCTTGTACCTCTGTGTTGACCCAACCTCT 470
Query 497 AGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGAAAATCTAAAGGGTTGTGGAA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGAAAATCTAAAGGGTTGTGGAA 530
Query 557 GACACTAACAGATGGTTCATGGGGAAATGCATTTGATGGCCTTGGGATTTCTCTTTTATT 616
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GACTCTAACCGATGGTTCATGGGGAAATGCATTTGATGGCCTTGGGATTTCTCTTTTATT 590
Query 617 GACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAGAACCTCCTTGA 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 591 GACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAGAACCTTCTTGA 650
Query 677 -AAAAGGAAAGGCAAAATCCAACAAAGATTCTTCCCCTGTAGTTCTCTCTGCCTTTATGG 735
||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 651 GAAAAG-AAAGGCAAAATCCAGCAAAGATTCTTCCCCTGTAGTCCTCTCTGCCTTTATGG 709
Query 736 CGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACCGTCATCACATATCCAGCAATCA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACCGTCATCACATATCCAGCAATCA 769
Query 796 GGTGCAAGGTTATGATTCAAGCAGCAGATGACTCGAAGGAAAATGAAGCGAAGAAGCCCC 855
|||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 770 GGTGCAAGGTGATGATTCAAGCAGCAGATGACTCAAAGGAAAATGAAACGAAGAAGCCCA 829
Query 856 GAAAAAGAATCAGGAAAACGATTCCCGGGGTAGTCTATGCTATATGGAAAAAAGAAGGGA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GAAAAAGAATCAGGAAAACGATTCCCGGGGTAGTCTATGCTATATGGAAAAAAGAAGGGA 889
Query 916 TCTTAGGCTTCTTTAAAGGCTTGCAGGCTCAGATCTTAAAGACAGTTCTGAGCTCAGCAT 975
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 890 TCTTAGGATTCTTCAAAGGCTTGCAGGCTCAGATCTTAAAGACAGTTTTGAGCTCGGCGT 949
Query 976 TACTACTAATGATCAAGGAGAAAATCACTGCAACCACATGGATTCTCATTCTAGCAATAA 1035
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TGCTACTAATGATCAAGGAGAAAATCACTGCAACCACATGGATTCTCATTCTAGCAATAA 1009
Query 1036 GAACTCTGTTTGTCACAAAGGCTAGATTGAAAAGTCCATAAAAGATTA-CCATTCCGCAA 1094
||||||||||||||||||||| ||| |||||||||||||||| || | || ||| ||||
Sbjct 1010 GAACTCTGTTTGTCACAAAGGGTAGGTTGAAAAGTCCATAAAC-AT-AGCCCTTCTGCAA 1067
Query 1095 GAGTCCCAAGGCCAAGTAAGAGCAAAGTCATTTGTTTGGCGATCAGAATCGAAAGATCAA 1154
|||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1068 GAGTCCCAAGCCCAAGCAAGTGCAAAGTCATTTGTTTGGCGATCTGAATCGAATGATCAA 1127
Query 1155 GTATTGTAGTCTTTCTCATTTCAAGAACTATTGAttttttttAGTAAAGATCTGATTGTA 1214
||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 1128 GTATTGTAGTCTTTCTCATTTTAAGAACTATTGATAATTTTTAGTAAAGATCTTATTGTA 1187
Query 1215 CTAGGTCCACATAAAGCTTCTTGTTGTTGCCAGATTGAGTTTCTGGGCTTAGAGATTATT 1274
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1188 ---GGTCCACATAAAGCTTCATGTTGTTGCCAGATTGAGTTTCTGGGCTTAGAGATTTTT 1244
Query 1275 CTATGGTTATTATGTAGTTTATGTTTGTTTTCTTCAGCTGTAATAAA-ATTGGGGATTTA 1333
|| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1245 CTCTGGTTATTGTGTAGTTTATGTTTGTTTTCTTCAGCTGTAATAAATAT-GGGGATTTC 1303
Query 1334 TACTATTT-TCCAAATTTTCATGTAC 1358
|||| ||| |||||||||||||||||
Sbjct 1304 TACT-TTTCTCCAAATTTTCATGTAC 1328
> Ahg477817 jgi|Araly1|477817|fgenesh2_kg.3__518__AT3G05290.1
Length=1125
Score = 965 bits (522), Expect = 0.0
Identities = 810/946 (86%), Gaps = 31/946 (3%)
Strand=Plus/Plus
Query 126 GATTTGGAATCCATCTCCGAAGCCACCTCCGGAGCCATTGGATCTCTTCTCAGCACCACC 185
||||||||||| | || ||||| ||||||||||||||||| || ||||| || || ||
Sbjct 18 GATTTGGAATCGGTGTCGGAAGCGACCTCCGGAGCCATTGGGTCGCTTCTTAGTACAACG 77
Query 186 ATTTTATACCCTCTTGATACCTGTAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGT 245
|| ||||| ||||||||||| |||||||| ||||||||||||||| |||| | ||| |||
Sbjct 78 ATCTTATATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGAGGT 137
Query 246 CAGCAGAAATACAGATATCTGTCAGATGTGT-TTTGGGAAGCAATTTCAT-CAGGA-AAT 302
||||| |||||||||||||| |||||||| | | |||||||||||||| | |||| ||
Sbjct 138 CAGCAAAAATACAGATATCTTTCAGATGT-TATGTGGGAAGCAATTTC-TAAAGGACAA- 194
Query 303 GTTC-TCTC-CTTGTATCAAGGCCTTGGGACTAAGAATTTGCAGTCTTTTATTTCGTC-C 359
| || | || | |||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 195 G-TCTTTTCAC-TGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTTTCATTTC-TCAG 251
Query 360 TTCATCTA-TTTCTATAGTTATAGCTATTTCAAGAG-GTTACATTCCCAAAGGATTGGTT 417
|||||||| ||| ||||| ||||||||||||||||| ||| ||| |||||| |||||
Sbjct 252 TTCATCTACTTT-TATAGCTATAGCTATTTCAAGAGAGTT-CATAGTGAAAGGACTGGTT 309
Query 418 CTAAGTCTATTGGAACAAAGGCTAATC-TCCTCATTGCTGCTGCTGCTGGTGCTTGTACC 476
|||| || |||||||| ||||| || | | |||||||||||||||||||| ||||||||
Sbjct 310 CTAAATCAATTGGAACTAAGGC-AAACTTGCTCATTGCTGCTGCTGCTGGGGCTTGTACT 368
Query 477 TCTGTTTTGACTCAACCTCTAGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGA 536
||||| || | ||| ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 369 TCTGTCTTAATTCAGCCTCTGGATACAGCTTCATCAAGGATGCAAACTAGTGAGTTTGGA 428
Query 537 AAATCTAAAGGGTTGTGGAAGACAC-TAACAGATGGTTCATGGGGAAATGCATTTGATGG 595
|||| ||||||||||||||||| | ||||||| ||| |||||||| |||||||||||||
Sbjct 429 GAATCAAAAGGGTTGTGGAAGAC-CTTAACAGAGGGTACATGGGGAGATGCATTTGATGG 487
Query 596 CCTTGGGATTTCTCTTTTATTGACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCA 655
||| ||||| ||||| ||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 488 CCTAGGGATCTCTCTCCTATTGACTTCAAATCCTGCAATTCAGTATACAGTGTTTGATCA 547
Query 656 GCTGAAACAGAACCTCCTTGAAAAAG-GAAAGGCAAAATCCA-ACAAAGATTCTTCCCCT 713
|||||||||| | || ||| || || ||| |||||| || | || | |||||| ||
Sbjct 548 GCTGAAACAGCATCTTCTT-AAGCAGAAAAACGCAAAA-GCAGAGAATGGTTCTTCTCCG 605
Query 714 GTAGTTCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACC 773
||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 606 GTAGTGCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCCAAAAGTGTTGCCACC 665
Query 774 GT-CATCACATATCCAGCAATCAGGTGCAAGGTTATGATTCAAGCAGCAGATGACTCGAA 832
|| | | |||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 666 GTGCTT-ACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGACTCGAA 724
Query 833 GGAAAATGAAGCGAAGAAGCCCCGAAAAAGAATCA-GGAAAACGATTCCCGGGGTAGTCT 891
|||||| ||| | ||||||||| ||| |||| ||| ||||||| ||||| ||||| ||||
Sbjct 725 GGAAAACGAAACAAAGAAGCCCAGAAGAAGA-TCAAGGAAAACAATTCCAGGGGTTGTCT 783
Query 892 ATGCTATATGGAAAAAAGAAGGGATCTTAGGCTTCTTTAAAGGCTTGCAGGCTCAGATCT 951
|||| ||||||| |||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 784 ATGCCATATGGAGAAAAGAAGGGATGTTAGGGTTCTTTAAGGGCTTACAGGCTCAGATCT 843
Query 952 TAAAGACAGTTCTGAGCTCAGCATTACTACTAATGATCAAGGAGAAAATCACTGCAACCA 1011
| ||||| ||||||||||||||||| ||| | |||||||||||||||||||| ||||| |
Sbjct 844 TGAAGACTGTTCTGAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACCGCAACGA 903
Query 1012 CATGGATTCTCATTCTAGCAATA---AGAACTCTGTTTGTCACAAA 1054
||||||||||||||||||| || |||||||||||| |||||||
Sbjct 904 CATGGATTCTCATTCTAGCTATCCGTAGAACTCTGTTTATCACAAA 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5