BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27530.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326950 jgi|Araly1|326950|fgenesh1_pm.C_scaffold_6002170 1559 0.0
> Ahg326950 jgi|Araly1|326950|fgenesh1_pm.C_scaffold_6002170
Length=1230
Score = 1559 bits (844), Expect = 0.0
Identities = 1113/1241 (90%), Gaps = 25/1241 (2%)
Strand=Plus/Plus
Query 10 ATGGTTACAATCCAAAAG-AACGGTGATATACCCG-CATTCGTCCGCGTTACCACTCAAT 67
||||||||| |||||||| ||| | ||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTTACAGTCCAAAAGAAAC-GCAATAGACCCGTCATTCGTCCGCGTTACCACTCAAT 59
Query 68 -GGCATGGTCTCATGTCATTTCCTGAAACCATACTACGTATATCCATATTGATAAATTTT 126
|| |||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 60 AGG-ATGGTCTC--G--------TGAAACCATACTACGTATATCAATATTGATAAATTTT 108
Query 127 ATCTGTTTTGGTCTTGTAAACGGCCAAATTTACAATGTACTCAAATTTGGTGCTGAAGGA 186
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 109 ATCTATTTTGGTCTTGTAAACGGCCAAAACTACAATGTACTCAAATTTGGTGCTAAAGGA 168
Query 187 GATGGTCAAACCGATGATTCAAATGCTTTTTTACAAGCATGGAACGCTACATGTGGTGGA 246
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 169 GATGGTGAAACCGATGATTCAAATGCTTTTATACAAGCATGGAACGCTACATGTGGTGGA 228
Query 247 GAAGAAAACATAAATACACTTTTTATTCCCTCTGGAAAAACATATTTACTTCAACCTATT 306
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 229 GAAGATAACATAAATACACTTCTTATTCCCTCTGGAAAAACATATTTGCTTCAACCTATT 288
Query 307 GAGTTCAAAGGTCCTTGTAAATCTACCTCCATAAAACTTCAGTTGGATGGTATCATTGTC 366
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 289 GAGTTCAAAGGCCCTTGTAAATCTACGTCCATAAAAATTCAGTTGGATGGTATCATTGTC 348
Query 367 GCACCTAGCAACATCACATCATGGTCCAACCCCAAATCTCAAACGTGGATTAGTTTTTCA 426
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 349 GCACCTAGCAACATCAAAACATGGTCCAACCCCAAATCTCAAATGTGGATTAGTTTTTCA 408
Query 427 GGTGTGCCTGGTCTAATGATTGATGGTTCAGGAACGATAAATGGTCGTGGTTCTTCCTTT 486
||| | |||||||||| |||||||| |||| ||| ||||||| ||||||||||||
Sbjct 409 TCTGTATTTAGTCTAATGATCGATGGTTCTGGAAAGATTGATGGTCGCGGTTCTTCCTTT 468
Query 487 TGGGAGGCACTACATATATGCAATTGTAATAATCTCACGATAAACGGGATAACTTCGATT 546
||||||||||||||||| | ||| ||| ||||||| || |||||||||||||||||||||
Sbjct 469 TGGGAGGCACTACATATTTACAAATGTGATAATCTTACAATAAACGGGATAACTTCGATT 528
Query 547 GATAGTCCAAAAAGTCATATATCAATCAAA-AATTGCCATTATGTTGCAATATCGAAAAT 605
||||||||||||| |||||||||||||||| | || |||||| | |||||||||||||
Sbjct 529 GATAGTCCAAAAACTCATATATCAATCAAAGGA-TGTAATTATGCTACAATATCGAAAAT 587
Query 606 AAATATTTTGGCACCTGAGAATAGTCCCAACACAGATGGTATTGATATAAGTTACTCGAC 665
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 588 AAATATTTTGGCACCTGAGAAAAGTCCCAACACAGATGGGATTGATATAAGTTACTCGAC 647
Query 666 GAATGTCAATATATTTGACTCTACAATTCAAACTGGAGATGATTGCATAGCAATCAACAC 725
||| |||| |||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 648 TAATATCAAAATATCCGACTCTACAATTCAAACTGGGGATGATTGCATAGCAATCGACAA 707
Query 726 TGGAAGTTCCAGTATCAACATCACACAAGTGAATTGTGGACCTGGTCATGGAATAAGTGT 785
||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 708 TGGAAGTTCTGGTATTAACATCACACAAATTAATTGTGGACCTGGTCATGGAATAAGTGT 767
Query 786 GGGAAGTCTTGGAGCTGATGGAGA-AAATGCAGCAGTTAGTGATGTTTACGTGACTCAGT 844
|||||||| |||||||||||| | |||||| | ||||||||||||| | |||||||| |
Sbjct 768 AGGAAGTCTAGGAGCTGATGGA-ACAAATGCCGAAGTTAGTGATGTTCATGTGACTCATT 826
Query 845 GTACTTTTAATAAAACGACGAATGGAGCTAGAATTAAGACATGGCAGGGTGGACAAGGTT 904
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GTACTTTTAATGAAACGATGAATGGAGCTAGAATTAAGACATGGCAGGGTGGACAAGGTT 886
Query 905 ATGCAAGAAACATAAGTTTTGAGAATATCACACTCATTAACGTACAA-AA-TCCAATTAT 962
||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 887 ATGCAAGAAACATAAGTTTTGAGAATATCACACTCATTAAC--ACAAGAAATCCAATTAT 944
Query 963 AATTGACCAACAATATACTGATAAAGTACTTCTTGATGCCACTAAGGATTCAGCGGTGGC 1022
|||||||||||||||| |||||||| || | |||||||||||||||||||||| |||||
Sbjct 945 CATTGACCAACAATATATTGATAAAGGACATATTGATGCCACTAAGGATTCAGCAGTGGC 1004
Query 1023 AATTAGCAGTGTAAAATATGTTGGTTTTCAAGGAACAACACTTAACGAAG-ATGCTATAA 1081
|||| ||| ||| |||||| ||||||||| ||||| ||| | || || | |||||||||
Sbjct 1005 AATTGGCAATGTGAAATATATTGGTTTTCGTGGAACCACAGTGAATGA-GTATGCTATAA 1063
Query 1082 TGCTTAAATGTAGTGCCATCACATATTGTAAAGACATGGTCATAGATGATATTGAAGTTA 1141
||||| ||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||
Sbjct 1064 CACTTAATTGTAGTGCCATCACACATTGTAAAGACGTTGTCATGGATGATATTCAAGTTA 1123
Query 1142 CCATGGAAAATGGAGAAAAACCTAAAGTTGAATGTGAAAATGTTGAAGGAGAATCCAGTG 1201
| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||
Sbjct 1124 CAATGGAAAATGGAGAAAAAGCTAAAGCTGAATGTCAAAATGTTGAAGGAGAATCTAGTG 1183
Query 1202 ACAATGATTTGATGCGCGAGTGCTTTAATAGTAATAGTACT 1242
| | ||||||||||||||| |||||||| | || |||||||
Sbjct 1184 ATAGTGATTTGATGCGCGACTGCTTTAAAAATAGTAGTACT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5