BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27550.1
Length=2496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489572 jgi|Araly1|489572|fgenesh2_kg.6__2706__AT5G27550.1 2119 0.0
> Ahg489572 jgi|Araly1|489572|fgenesh2_kg.6__2706__AT5G27550.1
Length=1263
Score = 2119 bits (1147), Expect = 0.0
Identities = 1210/1241 (98%), Gaps = 2/1241 (0%)
Strand=Plus/Plus
Query 323 CTACTAAGCTTGGAGCTCTTGAAAAACAGTACTTGGAAGAGTCATCAGAGAGGAAACGAT 382
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 8 CTACTAAGCTTGGAACTCTGGAAAAACAGTACTTGGAAGAGTCATCAGAGAGGAAACGAT 67
Query 383 TATACAATGAAGTGATCGAACTCAAGGGAAATATCAGAGTCTTTTGCAGATGCAGACCTC 442
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 68 TATACAATGAAGTGATCGAACTCAAGGGAAATATCAGGGTCTTTTGCAGATGCAGGCCTC 127
Query 443 TAAACCAAGCTGAAATAGCCAATGG-TTGTGCTTCTGTAGCTGAGTTTGATACAACACAG 501
||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||
Sbjct 128 TAAACCAAGCTGAAATAGCAAATGGCTT-TGCTTCTGTAGCTGAGTTTGAGCCAACACAG 186
Query 502 GAAAACGAGCTCCAGATACTTTCATCTGATTCCTCCAAGAAGCATTTTAAATTTGACCAT 561
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 GAAAACGAGCTCCAGATACTTTCATCTGATTCCTCCAAGAAGCATTTTAAGTTTGACCAT 246
Query 562 GTCTTTAAGCCTGACGATGGCCAAGAGACTGTTTTTGCACAGACAAAACCTATAGTTACT 621
|| |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 247 GTTTTTAAGCCAGAAGATGGCCAAGAGGCTGTTTTTGCACAGACAAAACCTATAGTTACT 306
Query 622 TCGGTGCTGGATGGGTATAATGTCTGCATATTTGCCTATGGCCAAACGGGAACTGGCAAG 681
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 307 TCGGTGCTGGATGGGTATAATGTCTGCATATCTGCCTATGGCCAAACTGGAACTGGCAAG 366
Query 682 ACATTTACCATGGAGGGAACACCAGAGAATAGAGGAGTGAACTATAGGACCTTAGAAGAA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACATTTACCATGGAGGGAACACCAGAGAATAGAGGAGTGAACTATAGGACCTTAGAAGAA 426
Query 742 CTATTTCGCTGTTCAGAAAGCAAAAGTCATCTCATGAAGTTTGAGCTATCAGTTAGCATG 801
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 427 CTATTTTGCTGTTCAGAAAGCAAACGTCATCTCATGAAGTTTGAGCTATCGGTTAGCATG 486
Query 802 TTGGAGGTTTATAATGAGAAGATAAGGGACCTCTTGGTAGATAACTCAAACCAGCCCCCT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TTGGAGGTTTATAATGAGAAGATAAGGGACCTCTTGGTAGATAACTCAAACCAGCCCCCT 546
Query 862 AAAAAGTTGGAGGTTAAGCAATCAGCAGAAGGGACGCAAGAAGTCCCAGGATTAGTCGAA 921
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 547 AAAAAGTTGGAGGTTAAGCAATCAGCAGAAGGGACACAAGAAGTCCCAGGATTAGTCGAA 606
Query 922 GCTCAAGTTTACAATACAGATGGAGTGTGGGATCTGCTCAAGAAAGGATATGCTGTTCGA 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GCTCAAGTTTACAATACAGATGGAGTGTGGGATCTGCTCAAGAAAGGATATGCTGTTCGG 666
Query 982 TCTGTGGGTTCAACTGCTGCAAATGAGCAAAGCAGCCGCTCTCATTGCTTGCTGCGAGTG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTGTGGGTTCAACTGCTGCAAATGAGCAAAGCAGCCGCTCTCATTGCTTGCTGCGAGTG 726
Query 1042 ACAGTGAAGGGAGAGAATTTGATAAATGGTCAGAGAACGAGAAGTCATCTTTGGTTAGTG 1101
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ACCGTGAAGGGAGAGAATTTGATAAATGGTCAGAGAACGAGAAGTCATCTTTGGTTAGTG 786
Query 1102 GACTTGGCTGGCAGTGAGCGAGTAGGAAAGGTAGAAGTTGAAGGAGAAAGGCTGAAAGAA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GACTTGGCTGGCAGTGAGCGAGTAGGAAAGGTAGAAGTTGAAGGAGAAAGGCTGAAAGAA 846
Query 1162 TCTCAATTTATCAATAAGTCGCTTTCAGCACTCGGTGATGTTATCTCTGCCCTTGCATCC 1221
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 847 TCTCAATTTATCAATAAGTCGCTTTCGGCACTCGGTGATGTTATCTCTGCCCTTGCATCC 906
Query 1222 AAAACAAGCCACATTCCTTACAGAAACTCAAAGCTGACCCATATGCTGCAAAACTCTTTG 1281
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 AAAACAAGCCACATTCCTTACAGAAACTCAAAGCTCACCCATATGCTGCAAAACTCTTTA 966
Query 1282 GGTGGAGATTGCAAGACATTAATGTTTGTCCAGATTAGTCCGAGTTCTGCCGATCTAGGA 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GGTGGAGATTGCAAGACATTAATGTTTGTCCAGATTAGTCCGAGTTCTGCCGATCTAGGA 1026
Query 1342 GAGACCCTTTGCTCCTTGAACTTTGCAAGTAGAGTCCGAGGAATCGAAAGTGGACCTGCC 1401
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1027 GAGACCCTTTGCTCCTTGAACTTTGCAAGTAGAGTCCGGGGAATCGAAAGTGGACCTGCC 1086
Query 1402 CGAAAACAGGCTGATGTCTCTGAACTCCTTAAGTCAAAACAAATGGCCGAGAAGCTGAAA 1461
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1087 CGAAAACAGGCGGATGTGTCTGAACTCCTCAAGTCAAAACAAATGGCCGAGAAGCTGAAA 1146
Query 1462 CACGAGGAAAAGGAAACAAAGAAGCTGCAGGACAATGTGCAGTCACTACAGCTACGCCTC 1521
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1147 CACGAGGAAAAGGAAACAAAGAAGCTGCAGGACAATGTGCAGTCATTACAGCTACGCCTC 1206
Query 1522 ACTGCTAGAGAACACATATGCCGAGGACTTCAAGATAAGGT 1562
||||||||||||||||||||| |||||||||||||||||||
Sbjct 1207 ACTGCTAGAGAACACATATGCAGAGGACTTCAAGATAAGGT 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94082905150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5