BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27560.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489571 jgi|Araly1|489571|fgenesh2_kg.6__2705__AT5G27560.1 1659 0.0
> Ahg489571 jgi|Araly1|489571|fgenesh2_kg.6__2705__AT5G27560.1
Length=1204
Score = 1659 bits (898), Expect = 0.0
Identities = 1103/1196 (92%), Gaps = 37/1196 (3%)
Strand=Plus/Plus
Query 136 GATTTGCCAAAGGCTTGCCTCATGGCTTATTCTTCAGTACCAAGCTGTTTCCATGGCTAT 195
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTTGCCAAAGGCTTGCATCATGGCTTATTCTTCAGTACCAAGCTGTTTCCATGGCTA- 59
Query 196 CTTCTCCATCGTTGTTCGTTCTCCACCACACAATTTTTCTCGGGTTCTCTCTCTTGTGGC 255
||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 60 --TCTCCATCGTTGTTCGTTCTCCACCACCCAATTTTTCGCGGGTTCTCTCTCTTGCGGC 117
Query 256 TTCTCTGCTTCTACCAATTCAAGACTAAGAACATGTGTCAAATTCGAGAAGTTTCAGGGT 315
||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 118 TTCTCTGCTTCTAGCAATTCGAGACTAAGAACATGTGTCAAATTCGACAAGTTTCAGGGT 177
Query 316 GACTCTCCTCTTGAACAGAACACTTCAGTTTCTTCTTCCTCTTCTGTTTCACAGGAACTA 375
|||||||||||||||| || ||| ||||||||| ||| | | |||||||| || ||||||
Sbjct 178 GACTCTCCTCTTGAACCGACCACATCAGTTTCTACTT-C-C-TCTGTTTCCCAAGAACTA 234
Query 376 CCATT---AGAAGAAGCTCAAGACCAACTAGAAGAAGAAGAAGATGA-TGATGACTGTTT 431
||||| ||||||||||||||||||||||||||| || | || | | | || ||||||
Sbjct 235 CCATTAGAAGAAGAAGCTCAAGACCAACTAGAAGACGATG-AGTTCAGTAATTTCTGTTT 293
Query 432 GCCTAATGATTTGGAAGGAGCTGTTAGGCAATCAGGTGAAGCAGGTGCTGCGTTTGTGAA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GCCTAATGATTTGGAAGGAGCTGTTAGGCAATCAGGTGAAGCAGGTGCTGCGTTTGTGAA 353
Query 492 CTCAGGAGGAA-ATAGAGCTATTGTGGAGCTTTTGATTCCTCAGCTGCAGTTTTTAGACG 550
||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| |
Sbjct 354 CTCAGGAGGAACA-AGAGCTATTGTGGAGCTCTTAATTCCCCAGCTGCAGTTTTTAGATG 412
Query 551 ATGAAGGTGCACAAGCTGAACTTTGGGACCTTTCGCGTGTTTTCTTGGAGACTCTCATTA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATGAAGGTGCACAAGCTGAACTTTGGGACCTTTCGCGTGTTTTCTTGGAGACTCTCATTA 472
Query 611 AAGAAACAGGTTGTGAGAGAGTTAAAGCTGTATTTCCAGACGCTGGAGCTGCTGCATTGC 670
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 473 AAGAAACAGGTTGTGAGAGAGTTAAAGCCGTATTTCCAGATGCTGGAGCTGCTGCATTGC 532
Query 671 TAAAATACCGGTGGAAAGATGCAACGTTCGGATTTGCTAGCTTAAGTGACCGGAAACCTG 730
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 533 TAAAATACCGGTGGAAAGATGCAACGTTTGGATTTGCTAGCTTAAGTGACAGGAAACCAG 592
Query 731 TGGAGAAAGAAGATGAGATCATTGTCATGGTTGTTCCTGATTACCAAATGCTGGAATATG 790
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 TGGAGAAAGAAGATGAGATCATTGTCATGGTTGTTCCTGACTACCAAATGCTGGAATATG 652
Query 791 TTGAGAAAATTGCTAATGGGCTTGCTGATGACCCGCCAAGGCCTCTCATTATGTGGAACC 850
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTGAGAAAATTGCAAAAGGGCTTGCTGATGACCCGCCAAGGCCTCTCATTATGTGGAACC 712
Query 851 CTCGTCTTATAAGCGAGGAAGTCGGGGTTGGGTTTAACGTGAGAAAACTAAGGCGTTACT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 713 CTCGTCTTATAAGCGAGGAAGTCGGGGTTGGGTTTAACGTGAGAAAACTAAGGCGGTACT 772
Query 911 TCCTAAGTTCATTCACTACGGTTTACTCTATGAGACCTCTGGCTGCTGGTGCTGTTTTCA 970
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCCTAAGTTCTTTCACTACGGTTTACTCTATGAGACCTCTGGCTGCTGGTGCTGTTTTCA 832
Query 971 GGTGTTATCCTGGTAAGTGGAAAGTCTTCTATGATAACAAAGACAGACCAGGCCGATACC 1030
||||||| || ||||| |||||||||||||||||||| |||||||||||||| || ||||
Sbjct 833 GGTGTTACCCCGGTAAATGGAAAGTCTTCTATGATAATAAAGACAGACCAGGGCGGTACC 892
Query 1031 TACTCGCTAAAGAACTCATTGGTCGACCTGATGCAGAGGATCTTGAGATAATATATGGGG 1090
||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 893 TACTCGCCAAGGAACTCATTGGTCGGCCTGATGCTGAGGATCTTGAGATAATATATGGGG 952
Query 1091 GAGTAGAAGAGAAATCAGAAGAAGGGCCATCTTTAATGAGTCAAGCTGCTGGAATTTTCT 1150
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 953 GCGTAGAAGAGAAATCAGAAGAAGGGCCATCTTTATTGAGTCAAGCTGCTGGAATTTTCT 1012
Query 1151 CATCCATTAACAGGTTCATGAAATCAATGTGAAGATGATTTCTTCTCTGCAGTGTAATAC 1210
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1013 CATCCATTAACAGGTTCATGAAATCAATGTGAAGATGATATCTTCTCTGCA-TG------ 1065
Query 1211 TATTCACATGTCCTGGTATTAGAAATGTAACCAAAGGGTATTACTGTATATCTTTCTATG 1270
|| ||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 1066 ---------GT------ATTAGAATTGTAACCAAAGGGTAT-ACTGTATATCTTTGTATG 1109
Query 1271 CTATTACATCATGAAGAGTATAA-TACGTACTGGTAAAGAGTTCTGTTCCTTCTAT 1325
|||||||| ||||| ||||||| | ||||| ||||| |||||||||||||||||
Sbjct 1110 CTATTACACCATGATGAGTATATCTTTGTACTCGTAAAAAGTTCTGTTCCTTCTAT 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5