BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27570.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1 1543 0.0
Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1 1243 0.0
Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974 878 0.0
Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667 837 0.0
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 435 5e-121
Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451 327 9e-89
> Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1
Length=1233
Score = 1543 bits (835), Expect = 0.0
Identities = 1105/1234 (90%), Gaps = 23/1234 (2%)
Strand=Plus/Plus
Query 1 ATGGATTTCGACTTTGCTAACTACGCTCTTACCCAAGGAAGAAAACGTAATGTCGATGAG 60
||||||||||||| |||| ||||||||||||| |||||||||||| ||| || ||||
Sbjct 1 ATGGATTTCGACTATGCTCCCTACGCTCTTACCGAAGGAAGAAAACCTAAAGT---TGAG 57
Query 61 GTAACTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGAGGCTATGAATCAGAAT 120
||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||||| ||||
Sbjct 58 GTAACTTCAGCGTCAAGGAAAGCGTACATGAAGCAATTGGCTGAGACTATGAATTTGAAT 117
Query 121 CGCACTCGGATTCTCGCTTTCAGAAACAAACCTAAAGCTCTGCTTTCTAGTAATCACTCT 180
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGAACCCGCATTCTCGCTTTCAGAAACAAACCTAAAGCTCTGCTTTCTAGTAATCACTCT 177
Query 181 GATCCTCCTCACCAACAACCTATATCCGTAAAGCCTCGTAGATACATTCCTCAGAATAGT 240
||| ||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 178 GATTCTCCTCATGAACAATCTAAATCCGTAAAGCGTCGTAGATACATTCCTCAGAATAGT 237
Query 241 GAGAGAGTCTTGGATGCACCTGGAATTGCGGATGACTTCTACCTTAACTTGTTGGATTGG 300
|||| | |||||||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 238 GAGAAAATCTTGGATGCACCTGGCATTGTGGATGACTTCTACCTTAACTTGTTGGACTGG 297
Query 301 GGCAGTTCTAATGTCTTAGCCATTGCTTTGGGAGACACTGTTTACTTGTGGGATGCGTCT 360
|| |||||||||||||||||| | |||||||| || || |||||||| ||||||| |||
Sbjct 298 GGTAGTTCTAATGTCTTAGCCCTAGCTTTGGGCCACTCTATTTACTTGCGGGATGCTTCT 357
Query 361 AGTGGTTCTACATATAAGCTTGTGACCATTGATGAAGAGGAGGGACCTGTCACAAGTATT 420
|||| |||||||| || ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 358 AGTGATTCTACATCTATGCTTGTGACTATTGATGAAGAGAAGGGACCTGTCACAAGTATT 417
Query 421 AACTGGACGCAAGATGGTCT-TGA-TCTGGCAATTGGTCTTGACAACAGTGAAGTCCAGC 478
||||||| |||||||||| | | | ||| |||||||||||||||||| |||||| |||
Sbjct 418 AACTGGATGCAAGATGGT-TGT-ACTCTCGCAATTGGTCTTGACAACTCTGAAGTGCAGA 475
Query 479 TTTGGGATTGTGTTTCCAATCGTCAAGTGAGAACACTGAGAGGTGGTCACGAGTCAAGAG 538
||||||||| || ||| ||| ||||| |||||||| |||||||||||||| || ||||||
Sbjct 476 TTTGGGATTCTGCTTCGAATAGTCAACTGAGAACATTGAGAGGTGGTCACCAGACAAGAG 535
Query 539 TAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGAGGAATGGATGGAAAGATCG 598
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 536 TAGGATCATTAGCATGGAACAATCACATCCTAACAACTGGAGGAAGGGATGGAAAAATCA 595
Query 599 TCAACAATGATGTGAGGATCAGATCATCTATTGTTGAAACTTACTTGGGTCACACAGAAG 658
|||||||||||||||||||||||||||| ||||| | || ||||||||||||||| || |
Sbjct 596 TCAACAATGATGTGAGGATCAGATCATCAATTGTGGGAAGTTACTTGGGTCACACTGATG 655
Query 659 AGGTTTGTGGTCTTAAGTGGTCAGAATCTGGaaaaaaaCTAGCAAGTGGTGGTAACGACA 718
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 656 AGGTTTGTGGTCTTAAGTGGTCAGAATCTGGGAAACAATTAGCAAGTGGTGGTAACGACA 715
Query 719 ATGTAGTACACATTTGGGATCATCGTTCTGTCGCTTCCTCAAACCCAACTAGGCAATGGC 778
| ||||||||||| ||||||| ||||| |||| ||||||||| |||||||| |||||
Sbjct 716 AGGTAGTACACATATGGGATC---GTTCTCTCGCATCCTCAAACTCAACTAGGAAATGGT 772
Query 779 TGCATAGGTTTGAGGAACATACAGCTGC-AGTGAGAGCTCTTGCTTGGTGCCCTTTCCAA 837
|||| |||||||||| |||||||||||| | || ||||||||| ||||| || ||||||
Sbjct 773 TGCAGAGGTTTGAGGGACATACAGCTGCTAC-GAAAGCTCTTGCATGGTGTCCATTCCAA 831
Query 838 GCGAGTTTGCTTGCAACTGGTGGTGGTGTAGGTGATGGGAAGATTAAGTTCTGGAATACA 897
|||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 832 GCGAATTTGCTTGCAACTGGTGGTGGTGTAGGAGATAGGACTATTAAGTTCTGGAATACA 891
Query 898 CACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTGTTATGG 957
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CACACTGGTGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTGTTATGG 951
Query 958 AGCAA-AAGTGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACT 1016
|| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 952 AGTAATAAG-GAAAGAGAGTTGCTTAGTTCACATGGGTTTACACAGAACCAGCTTACACT 1010
Query 1017 TTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCT 1076
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1011 TTGGAAGTATCCATCTATGTTGAAAATAGCTGAACTCAATGGTCATACATCAAGAGTTCT 1070
Query 1077 TTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCTGCAGCCGGTGACGAGACTCT 1136
|| ||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 1071 TTATATGGCACAGAGTCCGGATGGTTGTACTGTGGCTTCAGCAGCAGGAGACGAGACTCT 1130
Query 1137 CAGGCTTTGGAATGTTTTTGGAG-A--ACCACCTAAGACCACCAAGAAAGCTGCTTCaaa 1193
|||||||||||||||||||||| | |||||| ||||||||||| ||||||||| ||||
Sbjct 1131 TAGGCTTTGGAATGTTTTTGGAGTACCACCACCAAAGACCACCAAAAAAGCTGCTCCAAA 1190
Query 1194 aaaaTATAC-G--GATCCATTTGCTCATGTGAAT 1224
| |||| | | ||| |||| |||||||||||
Sbjct 1191 AGCATAT-CTGCAGAT--ATTTTCTCATGTGAAT 1221
> Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1
Length=1494
Score = 1243 bits (673), Expect = 0.0
Identities = 1066/1253 (85%), Gaps = 37/1253 (3%)
Strand=Plus/Plus
Query 1 ATGGATTTCGACTTTGCTAACTACGCTCTTACCCAAGGAAGAAAACGTAATG-TC-GA-T 57
||||||||||||| |||| ||| || || || ||||||||||| |||| | || || |
Sbjct 237 ATGGATTTCGACTATGCTCACTTTGCCCTCACTGAAGGAAGAAAAGGTAACGATCAGACT 296
Query 58 G-A--GGTAACTTCAGCAT-CAAGAAAAGCCTACATGACGCAATTGGCTGAGGCTATGAA 113
| | ||||| |||| ||| ||| | | ||||||| || ||||||||||||| | |||||
Sbjct 297 GCAGCGGTAAGTTCACCATCCAA-AGAGGCCTACAGGAAGCAATTGGCTGAGACCATGAA 355
Query 114 TCAGAATCGCACTCGGATTCTCGCTTTCAGAAACAAACCTAAAGCT-C--T-G--CT--T 165
| ||||| ||| ||||||||||| ||||||||||||||| ||||| | | | || |
Sbjct 356 TTTGAATCACACCCGGATTCTCGCCTTCAGAAACAAACCTCAAGCTCCTGTAGAACTGCT 415
Query 166 T-CTAGTAATCACTCTGATCCTCCTCACCAACAACCTATATCCGTAAAGCCTCGTAGATA 224
| | || |||||||||| | ||| ||||||||| |||| ||| |||||||||||||||||
Sbjct 416 TCCCAGCAATCACTCTGCTTCTCTTCACCAACAGCCTAAATCTGTAAAGCCTCGTAGATA 475
Query 225 CATTCCTCAGAATAGTGAGAGAGTCTTGGATGCACCTGGA-ATTGCGGATGACTTCTACC 283
||||||||||| | ||||||| |||||||||||||| | |||| |||||| |||||||
Sbjct 476 CATTCCTCAGACTTCTGAGAGAACCTTGGATGCACCTG-ACATTGTGGATGATTTCTACC 534
Query 284 TTAACTTGTTGGATTGGGGCAGTTCTAATGTCTTAGCCATTGCTTTGGGAG-ACACTGTT 342
| |||||| |||| ||||||||| |||||||||||||||| || |||| | |||||||
Sbjct 535 TCAACTTGCTGGACTGGGGCAGTGCTAATGTCTTAGCCATAGCCTTGG-ACCACACTGTC 593
Query 343 TACTTGTGGGATGCGTCTAGTGGTTCTACATATAAGCTTGTGACCATTGATGAAGAGGAG 402
|||||||||||||| || | ||||||||||| | ||||||||||||||||||| ||| ||
Sbjct 594 TACTTGTGGGATGCTTCCACTGGTTCTACATCTGAGCTTGTGACCATTGATGAGGAGAAG 653
Query 403 GGACCTGTCACAAGTATTAACTGGACGCAAGATGGTCTTGATCTGGCAATTGGTCTTGAC 462
||||||||||||||||| |||||| | | ||||||| | || | ||| |||| || ||
Sbjct 654 GGACCTGTCACAAGTATCAACTGGGCTCCTGATGGTCGTCATGTTGCAGTTGGGCTCAAC 713
Query 463 AACAGTGAAGTCCAGCTTTGGGATTGTGTTTCCAATCGTCAAGTGAGAACACTGAGAGG- 521
||| |||||||||||||||||||| || |||||| |||||| |||||||| ||| |||
Sbjct 714 AACTCTGAAGTCCAGCTTTGGGATTCTGCTTCCAACCGTCAACTGAGAACATTGA-AGGG 772
Query 522 TGGTCACGAGTCAAGAGTAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGAGG 581
||||||| ||||||||||||||||| ||||||||||||||||||| || || ||||||||
Sbjct 773 TGGTCACCAGTCAAGAGTAGGATCACTGGCATGGAACAATCACATCCTTACTACTGGAGG 832
Query 582 AATGGATGGAAAGATCGTCAACAATGATGTGAGGATCAGATCATCTATTGTTGAAACTTA 641
|||||||||| |||| | |||||||||||||||||||||||| | ||||||||||||||
Sbjct 833 AATGGATGGACTGATCATTAACAATGATGTGAGGATCAGATCACCCATTGTTGAAACTTA 892
Query 642 CTTG-GGTCACACAGAAGAGGTTTGTGGTCTTAAGTGGTCAGAATCTGGaaaaaaaCTAG 700
| | |||||||| ||||||||||||| || |||||||||| ||||||| | ||||||
Sbjct 893 CA-GAGGTCACACTCAAGAGGTTTGTGGGCTAAAGTGGTCAGGATCTGGACAGCAACTAG 951
Query 701 CAAGTGGTGGTAACGACAATGTAGTACACATTTGGGATCATCGTTCTGTCGCTTCCTCAA 760
||||||| || ||||||||||| |||||||| ||||||| ||||||| ||||||||||
Sbjct 952 CAAGTGGAGGCAACGACAATGTCGTACACATATGGGATC---GTTCTGTTGCTTCCTCAA 1008
Query 761 ACCCAA-CTAGGCAATGGCTGCATAGGTTTGAGGAACATACAGCTGCAGTGAGAGCTCTT 819
|| ||| | | |||||||||||| || |||||||||||||| |||| |||| |||||||
Sbjct 1009 ACTCAAAC-ACGCAATGGCTGCACAGACTTGAGGAACATACATCTGCTGTGAAAGCTCTT 1067
Query 820 GCTTGGTGCCCTTTCCAAGCGAGTTTGCTTGCAACTGGTGGTGGTGTAGGTGATGGGAAG 879
|| ||||||||||||||||||| ||||||||||||||||||||||| ||| || ||| |
Sbjct 1068 GCGTGGTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTGGAGGAGACAGGACG 1127
Query 880 ATTAAGTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAA 939
|| || ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1128 ATAAAATTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGCTCCCAA 1187
Query 940 GTTTGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAGTTGCTTAGCTCACATGGGTTTAC 998
|||||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 1188 GTTTGTTCGTTGTTATGGAGCAAGAA-TGAAAGAGAGTTGCTTAGTTCACATGGGTTTAC 1246
Query 999 ACAGAACCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATGG 1058
|||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 1247 ACAGAATCAGCTCACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCACTGG 1306
Query 1059 TCATACATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCTGC 1118
|||||||||||||||||| | |||||| |||||||| |||||||||||||| ||||| ||
Sbjct 1307 TCATACATCAAGAGTTCTATATATGGCCCAGAGTCCTGATGGTTGTACCGTAGCTTCAGC 1366
Query 1119 AGCCGGTGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCACCTAAGACCACCAA 1178
||| || ||||||||||| ||| ||||||| |||||||||| |||| | |||| ||||
Sbjct 1367 AGCAGGAGACGAGACTCTGAGGTTTTGGAACGTTTTTGGAGTACCAG--A-GACCGCCAA 1423
Query 1179 GAAAGCTGCTTCaaaaaaa-TATACGGATCCATTTGCTCATGTGAATCATATT 1230
||||||||| ||||| | | | || | |||||| |||| ||||||| ||||
Sbjct 1424 AAAAGCTGCTCCAAAAGCAGTTTCCG-AGCCATTTTCTCACGTGAATCGTATT 1475
> Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974
Length=1359
Score = 878 bits (475), Expect = 0.0
Identities = 921/1127 (82%), Gaps = 67/1127 (6%)
Strand=Plus/Plus
Query 67 TCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGAGGCTATGAATCAGAATCGCACT 126
||| |||||||| |||| |||| || |||||| |||||| | ||||||| ||||||||||
Sbjct 202 TCACCATCAAGAGAAGCTTACAGGAAGCAATTAGCTGAGACAATGAATCTGAATCGCACT 261
Query 127 CGGATTCTCG-CTTTCAGAAACAAACCTAAAGCT-C--T---G---CTTTCTAGTAATCA 176
|||||||||| |||| || ||||||||| ||||| | | | ||| | | | ||
Sbjct 262 CGGATTCTCGCCTTT-AGGAACAAACCTCAAGCTCCGGTCCAGTTACTTCCCCGCGAGCA 320
Query 177 CTCTG---ATCCTCCTCACCAACAACCTATATCCGTAAAGCCTCGTAGATACATTCCTCA 233
||||| || ||| | |||||||||||| |||||||||||| || |||||||| |||||
Sbjct 321 CTCTGTTTATTCTCTTTACCAACAACCTAAATCCGTAAAGCCGCGAAGATACATCCCTCA 380
Query 234 GAATAGTGAGAGAGTC-TTGGATGCACCTGGA-ATTGCGGATGACTTCTACCTTAACTTG 291
|||| | ||||||| | |||||||||||| || |||| ||||||||| ||||||||||||
Sbjct 381 GAATTGCGAGAGAG-CGTTGGATGCACCT-GATATTGTGGATGACTTTTACCTTAACTTG 438
Query 292 -TTGGATTGGGGCAGTTCTAATGTCTTAGCCATTGCTTTGGG-AGACACTGTTTACT-TG 348
|| |||||||||||| ||||||| ||||| || |||||||| | ||||| || | |
Sbjct 439 CTT-GATTGGGGCAGTGCTAATGTTTTAGCTATAGCTTTGGGTCG-TACTGTGTA-TCTA 495
Query 349 TGGGATGCGTCTAGTGGTTCTACATATAAGCTTGTGACCATTGATGAAGAGGA-GGGACC 407
|||||||| |||||||||||| | | |||||||||| |||||||||| | ||||||
Sbjct 496 TGGGATGCTTCTAGTGGTTCTGTTTCTGAGCTTGTGACTGTTGATGAAGA-TATGGGACC 554
Query 408 TGTCACAAGTATTAACTGGACGCAAGATGGTCTTGATCTGGCAATTGGTCTTGACAACAG 467
||| ||||||||||||||| | |||||||||||| |||| || |||| ||||| |||
Sbjct 555 TGTTACAAGTATTAACTGGGCACAAGATGGTCTTAATCTCGCGGTTGGGCTTGATAACTC 614
Query 468 TGAAGTCCAGCTTTGGGATTGTGTTTCCAATCGTCAAGTGAGAACACTG-AGAGGTGGTC 526
|||||||||||||||||||| ||| | | |||| |||||||||| || || |||||||
Sbjct 615 TGAAGTCCAGCTTTGGGATTCTGTAGCTAGTCGTAAAGTGAGAACGTTGAAG-GGTGGTC 673
Query 527 ACGAGTCAAGAGTAGGATCATTGGCATGGAACAATCACATTC-TAACAACTGGAGGAATG 585
|| |||||||||||||||||||||| ||||||||||| | || ||||||| ||||| |||
Sbjct 674 ACCAGTCAAGAGTAGGATCATTGGCGTGGAACAATCATA-TCTTAACAACGGGAGGTATG 732
Query 586 GATGGAAAGATCGTCAACAATGATGTGA-GGATCAGATCATCTA--TTGTTG-AAACTTA 641
||||| ||||| | ||||| ||||| | || | |||||| | | ||| || |||||||
Sbjct 733 GATGGGAAGATTATTAACAACGATGT-ACGGGTTAGATCA-C-ACGTTG-TGAAAACTTA 788
Query 642 CTTGGGTCACACAGAAGAGGTTTGT-GGTCTTAAGTGGTCAGAATCTGGaaaaaaaCTAG 700
| ||||||||| ||||||||| ||| | ||||||||||| |||||| | | |||
Sbjct 789 CAGGGGTCACACTCTTGAGGTTTGTGGGT-TGAAGTGGTCAGAGTCTGGACAGCATTTAG 847
Query 701 CAAGTGGTGGTAACGACAATGTAGTACACATTTGGGATCATCGTTCTGTCGCTTCCTCAA 760
|||||||||| ||||||||| | || ||| | ||||| | | || ||
Sbjct 848 CAAGTGGTGGAAACGACAATTTGGTTCACGTATGGGA--A---------C-ATT-CT--- 891
Query 761 ACCCAACTAGGCAATGGCTGCATAGGTTTGAGGAACATACAGCTGCAGTGAGAGCTCTTG 820
| | | |||| | ||||||||||||||||||| ||| |||| || | ||| || |
Sbjct 892 A--C--C-AGGCGGTCTTTGCATAGGTTTGAGGAACACACATCTGCGGTAAAAGCACTGG 946
Query 821 CTTGGTGCCCTTTCCAAGCGA-GTTTGCTTGCAACTGGTGGTGGTGTAGGTGATGGGAAG 879
||||||||||||| ||| | | |||| ||||||||||||||||||| || ||| ||| |
Sbjct 947 CTTGGTGCCCTTTTCAATC-AGGTTTACTTGCAACTGGTGGTGGTGGAGAAGATAGGACG 1005
Query 880 ATTAAGTTCTGGAATACAC-ACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCA 938
|| |||||||||||||| | | || || |||||||||||||| ||||| |||||||| ||
Sbjct 1006 ATAAAGTTCTGGAATACTCGA-ACAGGAGCTTGCTTGAATTCGGTAGACACTGGCTCACA 1064
Query 939 AGTTTGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAGTTGCTTAGCTCACATGGGTTTA 997
||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1065 AGTTTGTTCTTTGATATGGAGCAAGAAG-GAAAGAGAGTTGCTTAGCTCACATGGGTTTA 1123
Query 998 CACAGAACCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATG 1057
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1124 CTCAGAACCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCAATG 1183
Query 1058 GTCATACATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCTG 1117
||||||||||| | ||||| | |||| ||||||||||||||||||||||||| ||||| |
Sbjct 1184 GTCATACATCACGCGTTCTATATATGTCACAGAGTCCGGATGGTTGTACCGTAGCTTCAG 1243
Query 1118 CAGCCGGTGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCA 1164
|||| || ||||||||||| |||||||||||||||||||||| ||||
Sbjct 1244 CAGCAGGGGACGAGACTCTGAGGCTTTGGAATGTTTTTGGAGTACCA 1290
> Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667
Length=1359
Score = 837 bits (453), Expect = 0.0
Identities = 971/1208 (80%), Gaps = 88/1208 (7%)
Strand=Plus/Plus
Query 1 ATGGATTTCGACTTTGCTAACTACGC-TCTTACCCAAGGAAGAAAACGT-AATGTCGATG 58
||||||||||||| |||| ||| | | ||||| ||||||| |||||| || | ||| |
Sbjct 127 ATGGATTTCGACTATGCTCACTTC-CAGCTTACGGAAGGAAG-AAACGTGAAAGACGAGG 184
Query 59 ------AGGTAA---CTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGAGGCTA 109
|||||| | ||| |||||||| |||| |||| || |||||| |||||| | |
Sbjct 185 CAACAAAGGTAAGTTCATCACCATCAAGAGAAGCTTACAGGAAGCAATTAGCTGAGACAA 244
Query 110 TGAATCAGAATCGCACTCGGATTCTCGCTTTCAGAAACAAACCT-AAA----GCT-C--- 160
|||||| ||||||||||||||||||||| ||||| ||||||||| ||| | | |
Sbjct 245 TGAATCTGAATCGCACTCGGATTCTCGCCTTCAGGAACAAACCTCAAACCCCGGTCCAGT 304
Query 161 TGCTTTCTAGTA-ATCACTCTG---ATCCTCCTCACCAACAACCTATATCCGTAAAGCCT 216
| ||| | || | | ||||||| || ||| | |||||||||||| ||||||||||||
Sbjct 305 TACTTCCCAG-AGAACACTCTGTTTATTCTCTTTACCAACAACCTAAATCCGTAAAGCCG 363
Query 217 CGTAGATACATTCCTCAGAATAGTGAGAGAGTC-TTGGATGCACCTGGA-ATTGCGGATG 274
|| |||||||| ||||||||| | ||||||| | |||||||||||| || |||| |||||
Sbjct 364 CGAAGATACATCCCTCAGAATTGCGAGAGAG-CGTTGGATGCACCT-GATATTGTGGATG 421
Query 275 ACTTCTACCTTAACTTG-TTGGATTGGGGCAGTTCTAATGTCT-TAGCCATTGCTTTGGG 332
|||| |||||||||||| || |||||||||||| ||||||| | |||||||||| |||||
Sbjct 422 ACTTTTACCTTAACTTGCTT-GATTGGGGCAGTGCTAATGT-TGTAGCCATTGCATTGGG 479
Query 333 -AGACACTGTTTACT-TGTGGGATGCGTCTAGTGGTTCTACATATAAGCTTGTGACCATT 390
| |||| || | | |||||||| |||||||||||| | | |||||||||| ||
Sbjct 480 CCG-TTCTGTCTA-TCTATGGGATGCTTCTAGTGGTTCTGTTTCTGAGCTTGTGACTGTT 537
Query 391 GATGAAGAGGA-GGGACCTGTCACAAGTATTAACTGGACGCAAGATGGTCTTGATCTGGC 449
|||||||| | ||||||||| ||||||||||||||| | |||||||||||| |||| ||
Sbjct 538 GATGAAGA-TATGGGACCTGTTACAAGTATTAACTGGGCACAAGATGGTCTTAATCTCGC 596
Query 450 AATTGGTCTTGACAACAGTGAAGTCCAGCTTTGGGATTGTGTTTCCAATCGTCAAGTGAG 509
|||| ||||| ||| |||||| ||||||||||||| ||| | | |||| |||||||
Sbjct 597 GGTTGGGCTTGATAACTCTGAAGTACAGCTTTGGGATTCTGTAGCTAGTCGTAAAGTGAG 656
Query 510 AACACTGAGAGG-TGGTCA-CGAGTCAAGAGTAGGATCATTGGCATGGAACAATCACATT 567
||| ||| ||| |||||| | |||||||||||||||||||||| ||||||| ||| | |
Sbjct 657 AACGTTGA-AGGATGGTCATC-AGTCAAGAGTAGGATCATTGGCGTGGAACAGTCATA-T 713
Query 568 C-TAACAACTGGAGGAATGGATGGAAAGATCGTCA-ACAATGATGTGA-GGATCAGATCA 624
| ||||||| ||||| |||||||| |||||| | | |||| ||||| | || | ||||||
Sbjct 714 CTTAACAACGGGAGGTATGGATGGGAAGATCAT-AGACAACGATGT-ACGGGTTAGATCA 771
Query 625 TCTA--TTGTTG-AAACTTACTTGGGTCACACAGAAGAGGTTTGT-GGTCTTAAGTGGTC 680
| | ||| || |||||||| |||||| || |||||||||| ||| | ||||||||
Sbjct 772 -C-ACGTTG-TGAAAACTTACAGGGGTCATACTCTAGAGGTTTGTGGGT-TGAAGTGGTC 827
Query 681 AGAATCTGGaaaaaaaCTAGCAAGTGGTGGTAACGACAATGTAG-TACACATTTGGGATC 739
|||||||||| | | ||||||| ||||| || || ||||| | || || | ||||
Sbjct 828 AGAATCTGGACAGCATTTAGCAAGCGGTGGCAATGAAAATGTTGTTA-ACGTATGGG--- 883
Query 740 ATCGTTCTGTCGCTTCCTCAAACCCAACTAGGCAATGGCTGCATAGGTTTGAGGAACATA 799
| | | | || || ||| ||| | ||||||||||| ||||||| |
Sbjct 884 A-----C--T-G-TT-CT--------ACTGGGCGGTCTTTGCATAGGTTTCAGGAACACA 925
Query 800 CAGCTGCAGTGAGAGCTCTTGCTTGGTGCCCTTTCCAAGCGA-GTTTGCTTGCAACTGGT 858
|| |||| || | |||||| || ||||||||||| ||| | | |||| ||||||||||||
Sbjct 926 CATCTGCGGTTAAAGCTCTGGCCTGGTGCCCTTTTCAATC-AGGTTTACTTGCAACTGGT 984
Query 859 GGTGGTGTAGGTGATGGGAAGATTAAGTTCTGGAATACAC-ACACTGGGGCTTGCTTGAA 917
||||||| || ||| ||| ||| |||||||||||||| | | || || |||||||||||
Sbjct 985 GGTGGTGGAGAAGATAGGACGATAAAGTTCTGGAATACTCGA-ACAGGAGCTTGCTTGAA 1043
Query 918 TTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAGT 976
||| ||||| |||||||| ||||||||||| ||| |||||||||| ||| ||||||||||
Sbjct 1044 TTCGGTAGACACTGGCTCACAAGTTTGTTCTTTGATATGGAGCAACAAG-GAAAGAGAGT 1102
Query 977 TGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTACCCATCTATGG 1036
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1103 TGCTTAGCTCACATGGGTTTACTCAGAACCAGCTTACACTTTGGAAGTACCCATCCATGG 1162
Query 1037 TGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTTTTTATGGCACAGAGTCCGG 1096
||||||||||||| |||||||||||||||||| | ||||| | |||| ||||||||||||
Sbjct 1163 TGAAAATGGCTGAGCTCAATGGTCATACATCACGCGTTCTATATATGACACAGAGTCCGG 1222
Query 1097 ATGGTTGTACCGTGGCTTCTGCAGCCGGTGACGAGACTCTCAGGCTTTGGAATGTTTTTG 1156
|||||||||| || ||||| ||||| || ||||||||||| ||| |||||||||||||||
Sbjct 1223 ATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGAGACTCTGAGGTTTTGGAATGTTTTTG 1282
Query 1157 GAGAACCA 1164
||| ||||
Sbjct 1283 GAGTACCA 1290
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 435 bits (235), Expect = 5e-121
Identities = 282/304 (93%), Gaps = 5/304 (2%)
Strand=Plus/Plus
Query 885 GTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 944
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTTCTGGAAT--ACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
Query 945 TTCATTGTTATGGAGCAAAAGTGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAA 1004
||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1014 TTCATTGTTATGGAGAAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGAA 1073
Query 1005 CCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATGGTCATAC 1064
|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 1074 TCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATAC 1133
Query 1065 ATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCTGCAGCCGG 1124
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1134 ATCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAGG 1193
Query 1125 TGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCACCTAAGACCACCAAGAAAGC 1184
||||||||||| ||| |||||||||||| ||||| |||| | |||||||||||||||
Sbjct 1194 AGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAG--A-GACCACCAAGAAAGC 1250
Query 1185 TGCT 1188
||||
Sbjct 1251 TGCT 1254
Score = 318 bits (172), Expect = 5e-86
Identities = 222/246 (90%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 61 GTAACTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGAGGCTATGA-ATCAGAA 119
||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||| ||
Sbjct 361 GTAACTTCAGCATCAAGAAAAGCCTACATGAAGCAATTGGCTGAGACTAT-ATATCAAAA 419
Query 120 TCGCACTCGGATTCTCGCTTTCAGAAACAAACCTAAAGCTCTGCTTTC-TAGTAATCACT 178
|| ||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 420 TCACACCCGAATTCTCGCTTTCAGAAACAAACCTAAAGCTCTG-TTTCCTAGTAATCACT 478
Query 179 CTGATCCTCCTCACCAACAACCTATATCCGTAAAGCCTCGTAGATACATTCCTCAGAATA 238
||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 479 CTGTTTTTCCTCACCAACAACCTAAATCCGTAAAGCCTCGTAGATACATTCCTCAGACTA 538
Query 239 GTGAGAGAGTCTTGGATGCACCTGGAATTGCGGATGACTTCTACCTTAACTTGTTGGATT 298
| |||| | ||||| |||||||||| | || ||||||||||||| ||||||||||||| |
Sbjct 539 GAGAGAAAATCTTGAATGCACCTGGCACTGTGGATGACTTCTACATTAACTTGTTGGACT 598
Query 299 GGGGCA 304
||||||
Sbjct 599 GGGGCA 604
Score = 143 bits (77), Expect = 3e-33
Identities = 93/101 (92%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 479 TTTGGGATTGTGTTTCCAATCGTCAAGTGAGAACACTGAGAGGTGGTCACGAGTCAAGAG 538
||||||||| |||||||||||||||| |||||||| ||| |||| ||||| |||||||||
Sbjct 648 TTTGGGATTCTGTTTCCAATCGTCAACTGAGAACATTGAAAGGTTGTCACCAGTCAAGAG 707
Query 539 TAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGA 579
| ||||||||| |||||||||||||||||||||||||||||
Sbjct 708 TTGGATCATTGACATGGAACAATCACATTCTAACAACTGGA 748
> Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451
Length=384
Score = 327 bits (177), Expect = 9e-89
Identities = 238/267 (89%), Gaps = 5/267 (2%)
Strand=Plus/Plus
Query 857 GTGGTGGTGTAGGTGATGGGAAGATTAAGTTCTGGAATACACACACTGGGGCTTGCTTGA 916
||||||||| ||| ||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
Query 917 ATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAG 975
|||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| ||||
Sbjct 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAA-TGAAACAGAG 219
Query 976 TTGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTAC---CCATCT 1032
|||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
Query 1033 ATGGTGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTTTTTATGGCACAGAGT 1092
||||||||||||||||| |||| ||||||||||||||||||||| | |||||| |||| |
Sbjct 280 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATT 339
Query 1093 CCGGATGGTTGTACCGTGGCTTCTGCA 1119
|| |||||||||||||| ||||| |||
Sbjct 340 CCTGATGGTTGTACCGTAGCTTCAGCA 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5