BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27580.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942291 jgi|Araly1|942291|scaffold_602835.1 935 0.0
Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1 915 0.0
Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1 854 0.0
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 398 3e-110
> Ahg942291 jgi|Araly1|942291|scaffold_602835.1
Length=859
Score = 935 bits (506), Expect = 0.0
Identities = 610/660 (92%), Gaps = 8/660 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 21 ATGGATTCTTCAATGTCGACGAAGAAGAAAACTAAATTGTCTCTGAGAAACCAAACTTGT 80
Query 61 TTCAAGAAATCGTCTCTTTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATG 120
|||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 81 TTCAAGAAATCGTCTC--TC-TCTTCTTCTACTGCAAAAAAGACCACGAACTTGTCTATG 137
Query 121 AGAGAAGAGACCATGTTTAAGAAAGCCTTGGAGCTTTCAACTCTGTGCGACATCGAAGTC 180
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 138 AGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATCGAAGTC 197
Query 181 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATCAATCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 198 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAGGATCAATCC 257
Query 241 AAGGTTCGAGACATGGCTGAGAGGTTTAGCAAACTACACGAGAGAGAGCGACGCAAGAAA 300
||||||||||||||||||||||| |||| ||||||| |||| |||||| |||||||||||
Sbjct 258 AAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGAGAGACGCAAGAAA 317
Query 301 AGAACAAACCTTTCTCTGTTTCTACGTAAAAAGATCCTCGACGACAATAAATTGTCGGAG 360
|| ||||||||||||||||| ||| | || |||||||||||||||||||| | | ||||
Sbjct 318 AGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAATAAGCTCTTGGAG 377
Query 361 AAAGTCTTAGAGATGAAGGATTCGCTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 420
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 378 AAAGTGTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 437
Query 421 CTGTTACTCCAACCCGAGAACCAGACCGAGCTAGGTCAGAGCCGTGCGGTTTCTTCCACA 480
|||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 438 CTGTTACTCCAACCAGAGAACCAGATCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCCACA 497
Query 481 ACGAATCCATTGTCTTCTCCTGAGGATCATCATCATCAACAATGGACAGAACCATTGGTG 540
|||||||||||||||| ||||| |||||||||||| | ||||||||| ||||||||||
Sbjct 498 ACGAATCCATTGTCTTTTCCTGTGGATCATCATCA--A-CAATGGACAAAACCATTGGTC 554
Query 541 ACTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCACCATTGAGT-AACCATCAGAG 599
| ||||||| ||||| ||||| ||||||||||||||||| |||||| | ||| |||||||
Sbjct 555 AATGGTGTGCCAAACGCAGAGAAAGACCTATCGACGTCATCATTGAATCAAC-ATCAGAG 613
Query 600 CAAATATTCAGTCTTTGTCTATAACCATGACAGCGGAAGCTTCTATCAAGTCCCTGACTC 659
||||| |||||||||| ||||||||||||||| || ||||||||||||||||| |||||
Sbjct 614 CAAATTTTCAGTCTTTCTCTATAACCATGACAATGGTAGCTTCTATCAAGTCCCAGACTC 673
> Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1
Length=834
Score = 915 bits (495), Expect = 0.0
Identities = 598/648 (92%), Gaps = 5/648 (1%)
Strand=Plus/Plus
Query 13 ATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGTTTCAAGAAATCG 72
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1 ATGTCGACGAAGAAGAAAACCAAACTGTCTCTGAGAAACCAAACTCGTTTCAAGAAATCA 60
Query 73 TCTCTTTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAAGAGACC 132
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCTC--T-GTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATGAGAGAAGACACA 117
Query 133 ATGTTTAAGAAAGCCTTGGAGCTTTCAACTCTGTGCGACATCGAAGTCTGTGTCATATAT 192
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 118 ATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATTGAAGTCTGTGTCATATAT 177
Query 193 TATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATCAATCCAAGGTTCGAGAC 252
|| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 178 TACGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATAAATCAAAGGTTCGAGAC 237
Query 253 ATGGCTGAGAGGTTTAGCAAACTACACGAGAGAGAGCGACGCAAGAAAAGAACAAACCTT 312
||||||||||| |||| ||||||| |||| |||||| ||||||||||||| |||||||||
Sbjct 238 ATGGCTGAGAGATTTACCAAACTAAACGATAGAGAGAGACGCAAGAAAAGCACAAACCTT 297
Query 313 TCTCTGTTTCTACGTAAAAAGATCCTCGACGACAATAAATTGTCGGAGAAAGTCTTAGAG 372
|||||||| ||| | || ||||||||||||||| |||| | ||||||||||| ||||||
Sbjct 298 TCTCTGTTGCTAAGGAAGAAGATCCTCGACGACGATAAGCTCTCGGAGAAAGTTTTAGAG 357
Query 373 ATGAAGGATTCGCTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTCCAA 432
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTCCAA 417
Query 433 CCCGAGAACCAGACCGAGCTAGGTCAGAGCCGTGCGGTTTCTTCCACAACGAATCCATTG 492
||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 418 CCCGAAAACCAGACCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCCACAACGAATCCATTG 477
Query 493 TCTTCTCCTGAGGATCATCATCATCAACAATGGACAGAACCATTGGTGACTGGTGTGTCA 552
||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||
Sbjct 478 TCTTCTCCTGAGGATCATCATCAACAACAATGGACAGAATCACTGGTGAATGGTGTGTCA 537
Query 553 AACACAGAGCAAGACCTATCGACGTCACCATTGAGT-AACCATCAGAGCAAATATTCAGT 611
|||||||||||||||||||||| |||| |||||||| ||| |||||||||||| |||| |
Sbjct 538 AACACAGAGCAAGACCTATCGATGTCATCATTGAGTCAAC-ATCAGAGCAAATTTTCAAT 596
Query 612 CTTTGTCTATAACCATGACAGCGGAAGCTTCTATCAAGTCCCTGACTC 659
|||| ||||||||||||||| || ||||||| |||| ||||||||||
Sbjct 597 CTTTCTCTATAACCATGACAATGGTAGCTTCTGTCAACTCCCTGACTC 644
> Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1
Length=651
Score = 854 bits (462), Expect = 0.0
Identities = 602/666 (90%), Gaps = 23/666 (3%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACTAAATTGTCTCTGAGAAACCAAACTTGT 60
Query 61 TTCAAGAAATCGTCTCTTTCTTCTTCTTCTACTGCAAAAAAGACCACGAATTTGTCTATG 120
|||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCAAGAAATCGTCTC--TC-TCTTCTTCTACTGCAAAAAAGACCACGAACTTGTCTATG 117
Query 121 AGAGAAGAGACCATGTTTAAGAAAGCCTTGGAGCTTTCAACTCTGTGCGACATCGAAGTC 180
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 AGAGAAGAGACTATGTTTAAGAAAGCCTTCGAGCTTTCAACTCTGTGCGACATCGAAGTC 177
Query 181 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAAGATCAATCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TGTGTCATATATTATGGTCGTGACGGAGAACTCATCAAGACATGGCCGGAGGATCAATCC 237
Query 241 AAGGTTCGAGACATGGCTGAGAGGTTTAGCAAACTACACGAGAGAGAGCGACGCAAGAAA 300
||||||||||||||||||||||| |||| ||||||| |||| |||||| |||||||||||
Sbjct 238 AAGGTTCGAGACATGGCTGAGAGATTTACCAAACTAAACGACAGAGAGAGACGCAAGAAA 297
Query 301 AGAACAAACCTTTCTCTGTTTCTACGTAAAAAGATCCTCGACGACAATAAATTGTCGGAG 360
|| ||||||||||||||||| ||| | || |||||||||||||||||||| | ||||||
Sbjct 298 AGCACAAACCTTTCTCTGTTGCTAAGGAAGAAGATCCTCGACGACAATAAGCTCTCGGAG 357
Query 361 AAAGTCTTAGAGATGAAGGATTCGCTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 AAAGTCTTAGAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTT 417
Query 421 CTGTTACTCCAACCCGAGAACCAGACCGAGCTAGGTCAGAGCCGTGCGGTTTCTTCCACA 480
||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||
Sbjct 418 AAGTTACTCCAACCCGAGAACCAAATCGAGTTAGGTCAGAGCCGTGTGGTTTCTTCCACA 477
Query 481 ACGAATCCATTGTCTTCTCCT--G--AG--GATCATCATCATCAACAATGGACAGAACCA 534
||||||||||||||||||||| | | || |||||||||||||| | | ||||
Sbjct 478 ACGAATCCATTGTCTTCTCCTTCGCTAATTGAGGATCATCATCAACAAC--A-ATCACCA 534
Query 535 TTGGTGACTGGTGTGTCAAACACAGAGCAAGACCTATCGACGTCACCATTGAGT-AACCA 593
||| | || | |||||||||||||||| |||||||||||| |||||||| ||| |
Sbjct 535 TTG---A-TG-T----CAAACACAGAGCAAGAGCTATCGACGTCATCATTGAGTCAAC-A 584
Query 594 TCAGAGCAAATATTCAGTCTTTGTCTATAACCATGACAGCGGAAGCTTCTATCAAGTCCC 653
||||||||||| |||||||||| ||||||||||||||| ||| ||||||| |||| ||||
Sbjct 585 TCAGAGCAAATTTTCAGTCTTTCTCTATAACCATGACAACGGTAGCTTCTGTCAACTCCC 644
Query 654 TGACTC 659
| ||||
Sbjct 645 TAACTC 650
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 398 bits (215), Expect = 3e-110
Identities = 255/274 (93%), Gaps = 3/274 (1%)
Strand=Plus/Minus
Query 310 CTTTCTCTGTTTCTACGTAAAAAGATCCTCGACGACAATAAATTGTCGGAGAAAGTCTTA 369
||||||||||| |||||||| |||||||||||||||| ||| | ||||||||||| |||
Sbjct 271 CTTTCTCTGTTACTACGTAAGAAGATCCTCGACGACAGTAAGCTCTCGGAGAAAGTGTTA 212
Query 370 GAGATGAAGGATTCGCTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTC 429
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 GAGATGAAGGATTCGTTAGAAAGTGGTCTACGGGTATTACAAGATAAGCTTCTGTTACTC 152
Query 430 CAACCCGAGAACCAGACCGAGCTAGGTCAGAGCCGTGCGGTTTCTTCCACAACGAATCCA 489
||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 151 CAACCAGAGAACCAGACCGAGTTAGGTCAGAGACGTGCCGTTTCTTCCACAACGAATCCA 92
Query 490 TTGTCTTCTCCTGAGGATCATCATCATCAACAATGGACAGAACCATTGGTGACTGGTGTG 549
||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||||
Sbjct 91 TTGTCTTCTCCTGTGGATCATCATCA--A-CAATGGACAGAACCATTGGTGAATGGTGTG 35
Query 550 TCAAACACAGAGCAAGACCTATCGACGTCACCAT 583
||||||||||||||||| |||||||||||| |||
Sbjct 34 TCAAACACAGAGCAAGAGCTATCGACGTCATCAT 1
Score = 132 bits (71), Expect = 4e-30
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAATTGTCTGTGAGAAACCAAACTTGT 60
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 356 ATGGATTCTTCAATGTCGACGAAGAAGAAAACCAAACTCTCTCTGAGAAACCAAACTTGT 297
Query 61 TTCAAGAAATCGTCTCTTTCTTC 83
||||||||||||||||| |||||
Sbjct 296 TTCAAGAAATCGTCTCTCTCTTC 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5