BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G27606.1

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947327 jgi|Araly1|947327|scaffold_703556.1                        104    1e-21


> Ahg947327 jgi|Araly1|947327|scaffold_703556.1
Length=247

 Score =  104 bits (56),  Expect = 1e-21
 Identities = 117/145 (81%), Gaps = 10/145 (7%)
 Strand=Plus/Plus

Query  1    ATGGGGAAGCGAAAGAATTTAG-GAAAAGAAAATGATTACGGAGATATTTCTCGATTTGT  59
            ||||||||| ||||| |||| | ||||||||||||||||||||||||||||||| |||||
Sbjct  69   ATGGGGAAGAGAAAG-ATTTTGCGAAAAGAAAATGATTACGGAGATATTTCTCGGTTTGT  127

Query  60   GGGAGGAGCT-GTATACAGAGTTCATATATTTATTATCGC-CGTAGAGGCGTTGCCCAA-  116
            || || |||  | |||  | |||||| ||||||||| ||  | ||| | ||||||| || 
Sbjct  128  GGAAGTAGCAAGCATATGG-GTTCATGTATTTATTACCGAAC-TAGCGCCGTTGCC-AAG  184

Query  117  ACAACAAAACA-AACACACCATAAA  140
            || | || ||| ||  |||||||||
Sbjct  185  ACCAGAACACACAAG-CACCATAAA  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040858596


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5