BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27610.1
Length=3344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942337 jgi|Araly1|942337|scaffold_602881.1 3290 0.0
> Ahg942337 jgi|Araly1|942337|scaffold_602881.1
Length=2746
Score = 3290 bits (1781), Expect = 0.0
Identities = 2131/2299 (93%), Gaps = 28/2299 (1%)
Strand=Plus/Plus
Query 214 GGCAGAGAAAACAGTTATATGGCGCCTACTAGGAAGTCGAAGAGTGTGAACAAGCGTTTC 273
|||||||||| ||||| ||||||||||| |||||||||||||||||| |||||||| |||
Sbjct 7 GGCAGAGAAATCAGTT-TATGGCGCCTAGTAGGAAGTCGAAGAGTGTAAACAAGCGCTTC 65
Query 274 ACCAATGAAGCGTCTCCAGATATCAATTTTGGGAGCGCAAGCAAAACCAAGCAAAGAAAG 333
|| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 66 ACTAATGAAGCTTCTCCAGATATCAATGGTGGGAGCGCAAGCAAAACCAAGCAAAGAAAG 125
Query 334 AAGAAATTGGCTGATAAGCTGGGACCTCAGTGGACCAAAAGG-GAGCTTGTGCGTTTCTA 392
|||||||||||||| ||||| ||||||||||||||| ||||| ||||||| ||||||||
Sbjct 126 AAGAAATTGGCTGACAAGCTAGGACCTCAGTGGACC-AAAGGAGAGCTTGCACGTTTCTA 184
Query 393 TGATGCTTATAGGAAGTATGTGGGAGACTGGAAAAAGGTAGCTGCTGCAGTACGGAATAA 452
||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 185 TGACGCTTATCGGAAGCATGTGGGAGACTGGAAAAAGGTAGCTGCTGCAGTGCGGAATAA 244
Query 453 CCGGTCTGTTGAGATGGTCGAAACACTCTTTTGTATGAATCGGGCATACTTATCCTTGCC 512
|||||||||||||||||| ||| | || |||| |||||||||||||||||||||| ||||
Sbjct 245 CCGGTCTGTTGAGATGGTGGAAGCTCTTTTTTCTATGAATCGGGCATACTTATCCCTGCC 304
Query 513 CGAGGGAACTGCTTCTGTAGCTGGCCTTATTGCAATGATGACTGATCACTACAGCGTCAT 572
||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 305 TGAGGGAACTGCGTCTGTAGCTGGCCTCATTGCGATGATGACTGATCATTACAGCGTCAT 364
Query 573 GGAGGGGAGCGAAAGTGAAGGAGAAGACCATGATGCTTCTGAGGTAACGAGGAAACATCT 632
||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct 365 GGAGGGGAGCGAAAGCGAAGTAGAAGACCATGATGCTTCTGAAGTACCGAGGAAACATCT 424
Query 633 GAAGCGCAAACGTCCTCAAGTTCTGCCTAGTGATTTTCGAGAAGAAGTTGTTCCACCACA 692
|||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 425 CAAGCGCAAACGTCCTCAAGTTCGGCCTATTGATTTTCGAGAAGAAGTTATTCCACCACA 484
Query 693 TTCAGTTGCATCAGTAGAAGGATGTCTCTCATTCTTGAAGCAGACACAAGCTTATGAAAA 752
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 485 TTCAGTTGCATCAGTAGAAGGATGCCTCTCATTATTGAAGCAGACACAAGCTTATGAAAA 544
Query 753 AAGGCAACGGGCCACTGGAAAACGTACACCTCGGTTTCTTGTCGCAATTACACATGAGAG 812
||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 545 AAGGCGACGTGCCACTGGGAAACGTACACCTCGGTTTCTTGTAGCAATTACACACGAGAG 604
Query 813 GGATGATATAGAAGATTTTAGTCCACCAAATAAAAGAGCCAAGAAACAACTTGATGCCGA 872
|||||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 605 GGATGATAGAGCAGATTCTAGTCCACCAAATAAAAGAGCCAAGAAGCAACTTGATGCCGA 664
Query 873 TGATGATGCATCAAGAAGGGGAGGAGGGTCTCCATACAGAAGAAAAGAACTCAGTGAAAT 932
||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |
Sbjct 665 TGATGATGCATCAAGAAGGGGAGGAGGGTCTCCCTATAGAAGAACAGAACTCAGTGACAG 724
Query 933 CACACCAACTAGGCTTAGGAAAACGTCACAAGCACAGGAAGCACAATTCAAGCACCCTGA 992
||||| |||||||||| | |||| || ||||||||||||||| |||||||||||||||||
Sbjct 725 CACACAAACTAGGCTTCGAAAAATGTTACAAGCACAGGAAGCTCAATTCAAGCACCCTGA 784
Query 993 TAGTTCCATGTTTGAGAATGGGGT--G----A---GAGATA-GATGGCATAAAAAGGGAG 1042
|||||||||||||||||||||||| | | |||||| || |||||||||||||||
Sbjct 785 TAGTTCCATGTTTGAGAATGGGGTGAGAACAAGCCGAGATAGGA-GGCATAAAAAGGGAG 843
Query 1043 CTGCTGATAGAGATGGTGCCTTGTTGATGGATATGGAAGGACTTGTTACCCAA-AA-GGA 1100
||||||||||||||||||||||||||| |||||||||||||||||||| |||| || |||
Sbjct 844 CTGCTGATAGAGATGGTGCCTTGTTGAGGGATATGGAAGGACTTGTTA-CCAAGAAGGGA 902
Query 1101 AAAAATTGTGAGAGTTGAAGAAGCAGAAGGAAATTATTC---TGATGATGATGATGGATT 1157
||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 903 AAAAA-TGTGAGAATTGAAGAAGCAGAAGGAAATGATTCTGATGATGATGATGATGGATT 961
Query 1158 AGGAGCTCTGAAGACATTGGCTGAAATGTCAGCTTCACTGGCTCCGGCTGGTTTGTTGGA 1217
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 962 AGGAGCTCTGAAGGCATTGGCTGAAATGTCAGCTTCACTGGCTCCGGCTGCTTTGATGGA 1021
Query 1218 ATCAGAATCATCTCCACACTGGGAAGAAGAAAGAAAAACTAACAACGTGGATAAGAAATC 1277
|||||||| |||||||| |||||||||||||||| | |||||||||||||| |||||||
Sbjct 1022 ATCAGAATTATCTCCACTGTGGGAAGAAGAAAGAATAGCTAACAACGTGGATGAGAAATC 1081
Query 1278 TAACACTCTGGAAACCGTGTCAACAAGCCATCACAGAGAAAAAGCAAAACAAGCAGGACT 1337
||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1082 TAAGACTCTGGAAACCGTGTCCACAAGCCATCACAGAGAAAAAGCAAAAGAAGCAGGACC 1141
Query 1338 AGAAGATAATCTCCTGCATGCAATTTCAGCCCCTGATAAAAGAAAACCGAAGTCTGTGCC 1397
||||| || |||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1142 AGAAGCTAGTCTCCTACTTGCAATTTCAGCCCCCGATAAAAGAAAACCGAAGTCTGTGCC 1201
Query 1398 GGAATCCGTTGATGGTAATGTTGTTTCCATCGAGGAGCTTCGCACTTCAAGCAGAAAACG 1457
||||||||||||||||||||||||||| |||| |||||| ||| || ||| ||||||||
Sbjct 1202 GGAATCCGTTGATGGTAATGTTGTTTCTGTCGAAGAGCTTGGCAGTTTAAGAAGAAAACG 1261
Query 1458 TAAACCAAAGTTTCAGGTGCTAGATGTTGTAGCTCCAAAAGAGTCTACACAGGACAAATC 1517
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1262 TAAACCAAAGTTTCAGGTGTTAGATGTTGAAGCTCCAAAAGAGTCTATTCAGGAAAAATT 1321
Query 1518 TCTATATACTAAGGAATCGGCTGAAGTTGATAGTTTGAAGACTCCCGTCAAAGCAAGACG 1577
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1322 TCTATATACTAAGGAATCGGCTGAAGATGATAATTTGAAGACTCTAGTCAAAGCAAGACG 1381
Query 1578 TTCTAGTCAAGGTCCAGCAAAACAGCTGAAAACTGCAAAGACCACGGTAGAATCTTCTTC 1637
|||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1382 TTCTGGTCAAGGTCCCGCAAAACAGCTGAAAACTGCAAAGACCTCGGAAGAATCTTCTTT 1441
Query 1638 AGCTAGTGATAAGAAAATAACTGGACCGGATGCAGTAGTGCCAGCTACACAAGTTTCAGC 1697
|||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1442 AGCTAGTGATAAGAAATTAACTATACCGGATGCAATAGTGCCAGCTACACAAGTTTCAGC 1501
Query 1698 TTCGGGTCCAGAGACTTTGCCACAGAAACCACCAAACAGGCGTAAGATAAGTTTGAAGAA 1757
|| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1502 TTTGGGTCCAGCGACTTTGCCACAGAAACCTCCAAACAGGCGTAAGATGAGTTTGAAGAA 1561
Query 1758 AAGTTTACAAGAAAGAGCTAAATCTTTAGAAACCACTCATGACAAACCACGTAGTTTCAA 1817
||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 1562 AAGTTTACAGGAAAGAGCTAAATCTTTAGAAACCACTCATGACAAGCTACGTAGTCGCAA 1621
Query 1818 AAAACTTTCAGAACATGAATTACTACAGGAGAAGTTGTCAAATTGTCTGTCATATCCATT 1877
|| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1622 AAGTCTTTCAGAACATGAATTACTAAAGGAGAAGTTTTCAAATTGTCTGTCATATCCATT 1681
Query 1878 GGTACGTCGATGGTGCATATATGAATGGTTCTACAGTGCTATTGACTATCCCTGGTTTGC 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 GGTACGTCGATGGTGCATATATGAATGGTTCTACAGTGCTATTGACTATCCCTGGTTTGC 1741
Query 1938 AAAGATGGAGTTCACTGATTATCTAAATCATGTGGGGCTTGGTCACGCTCCAAGACTTAC 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 AAAGATGGAGTTCACTGATTATCTAAATCATGTGGGGCTTGGTCACGCTCCAAGACTTAC 1801
Query 1998 TCGTGTTGAATGGAGTGTCATTAAAAGTTCTCTCGGTAGACCTCGGAGATTGTCTCAGAG 2057
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1802 TCGTGTTGAATGGAGTGTCATTAAAAGTTCTCTCGGTAGACCTCGGAGGTTGTCTGAGAG 1861
Query 2058 ATTCCTACAGGATGAGCGGGATAAACTCCAAGAATATCGTGAGTCTGTGAGAAAGCATTA 2117
|||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1862 GTTCCTACATGATGAGCGGGATAAACTCCAACAATATCGTGAATCTGTGAGAAAGCATTA 1921
Query 2118 TACAGAGCTGCGTGGATGTGCTACGGGAGTGCTTCATACAGATTTGGCCCGTCCTTTATC 2177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 TACAGAGCTCCGTGGATGTGCTACGGGAGTGCTTCATACAGATTTGGCCCGTCCTTTATC 1981
Query 2178 AGTCGGGAATAGAGTGATTGCCATCCATCCTAAAACACGGGAGATTCGTGATGGCAAGAT 2237
||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1982 AGTCGGGAATAGAGTCATTGCCATCTATCCTAAAACACGGGAAATTCGTGATGGCAAGAT 2041
Query 2238 TCTTACTGTGGATCATAACAAGTGCAACGTTCTCTTTGATGAATTGGGTGTCGAGTTAGT 2297
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 2042 TCTTACTGTGGATCATAACAAGTGCAACGTTTTGTTTGATGAATTGGGTGTTGAGTTAGT 2101
Query 2298 TATGGACATTGACTGCATGCCTTTAAATCCATTGGAATACATGCCAGAGGGTCTAAGGAG 2357
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2102 TATGGATATTGACTGCATGCCTTTAAATCCATTGGAATACATGCCAGAGGGGCTAAGGAG 2161
Query 2358 GCAAATTGATAAGTGCT-TGGCTATATGCAAAGAAGCA-AGGCTTAACAGACACCCAAGC 2415
| ||| ||||||||| | | |||||| ||||||||||| || ||||||||||||||||||
Sbjct 2162 GAAAACTGATAAGTG-TGTAGCTATAGGCAAAGAAGCACAG-CTTAACAGACACCCAAGC 2219
Query 2416 TCTGATGCATCTGTTCTGTTCTCTCCTTCTGTGCTTGAAAATGTCAACTTTTCCATGAAT 2475
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2220 TCTGATGCATCTCTTCTGTTCTCTCCTTCTGTGCTCGAAAATGTCAAATTTTCCATGAAT 2279
Query 2476 CCTCCTCCTGCGAAACAGG 2494
| |||| ||||||||||
Sbjct 2280 CATCCT---GCGAAACAGG 2295
Score = 649 bits (351), Expect = 0.0
Identities = 424/458 (93%), Gaps = 9/458 (2%)
Strand=Plus/Plus
Query 2708 AGGCTGCATCGTCGGGGAAGAACAATGAAGACTCAGAGAATATGGTTCACCAAGCTTTAA 2767
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 2293 AGGCTGCATCGTCGGGGAAGAACAATGAAGACTCAGGGAATATGGTCCACCAAGCT--A- 2349
Query 2768 GCTCCATTGGCGAACATCAGCCATTAGACAACTCTATAGTGCCTGGTATCAAGCATCAAG 2827
|||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct 2350 GCTCAATTGGCGAACATCAACCATTATACAGCTCTATAGTGCCTGGTATCAAGCATCAAG 2409
Query 2828 AGTATACCAATGGCAGCTTGGATCATCATTCCTT-AAACACAGCAGAGCCGATGAGTAAC 2886
|| ||||||||||||||||||||||| || |||| ||||||||||||||| |||| ||||
Sbjct 2410 AGCATACCAATGGCAGCTTGGATCATTAT-CCTTCAAACACAGCAGAGCCAATGACTAAC 2468
Query 2887 GGTTTCATCTCACAGGAAGGATCAGGAAAAAACAAAACACCAATGCCTTCAGAGCTTATC 2946
||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||
Sbjct 2469 GGTTTCATCTCACAGGACGGATCAGGGAAAAACAAAACGCAAATGCCTTCAGAGCTTATC 2528
Query 2947 ACCTCTTGTGTTGCATCTTGGCTCATGATGCAGATGATCTCAAAGAAGCAGTACCCACCA 3006
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2529 ACCTCTTGTGTTGCCTCTTGGCTCATGATGCAGATGATCTCACAGAAGCAGTACCCACCA 2588
Query 3007 GCAGATGTGGCTCAGCTAATGGATACAGTAGTGAATGACTTGCAGCCACGGTGTCCACAG 3066
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2589 GAAGATGTGGCTCAGCTAATGGATACAGCAGTGAGTGACTTGCAGCCACGGTGTCCACAG 2648
Query 3067 AATATGCCGATATACAGAGAAATTCAAACTTGTATGGGATTGATCAAGACTCAAATAATG 3126
|| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||
Sbjct 2649 AACATGCCGATATACAGAGAAATTCAGACTTATATGGGACTGATCAAGACTCAAATCATG 2708
Query 3127 GCTCTTGTAAGAACGT----CATGAAACATTTGTGTCC 3160
|||||||||||||| | ||||||||||||||||||
Sbjct 2709 GCTCTTGTAAGAACATGAAACATGAAACATTTGTGTCC 2746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126236969641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5