BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27620.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942336 jgi|Araly1|942336|scaffold_602880.1 1683 0.0
> Ahg942336 jgi|Araly1|942336|scaffold_602880.1
Length=1045
Score = 1683 bits (911), Expect = 0.0
Identities = 998/1040 (96%), Gaps = 6/1040 (1%)
Strand=Plus/Plus
Query 430 ACTCAGTTAATGGCGGATTTTCAGACATCAACACAACGGGCCAAGTGGATTTTCACTCCC 489
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 ACTGAGTAAATGGCGGATTTTCAGACATCAACACAACGGGCCAAGTGGATTTTCACTCCC 71
Query 490 CAGAAACTGGCAGAGAGATATAAAGCTGCTAACCAGAGGGCAGTGCAAATGCTGGAGAAG 549
|||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 72 CAGAAACTGGCAGACAAATATAAAGCTGCTAACAAGAGGGCAGTGCAAATGCTGGAGAAG 131
Query 550 TGTGGAACAACTCAAGTTGAAGTAGATGCTAGTGGATCACTAACATATCCTAAAGATAAA 609
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 132 TGTGGAACAACCCAAGTTGAAGTAGATGCCAGTGGATCACTAACATATCCTAAAGATAAA 191
Query 610 GTTGGTTCAGGAGATCAAGCTGATAAGAAGCTTAAGCCTTTGAGTGCTGATGAAGAAAGG 669
|||| | ||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 192 GTTGATGCAGCAGATCCAGCTGATAAGAAGCTTAAGCCTTTGAGTGTTGATGAAGAACGG 251
Query 670 TTCATGAGAGCATTTTATGAGGCAAAGGTCCAAGAAGTGTGCAGTGCCTTTGCATTTCCT 729
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 252 TTCATGAGAGCATTTTATGAGGCTAAGGTCCAAGAAGTGTGTAGTGCCTTTGCATTTCCT 311
Query 730 CACAAGATTCAGGCAACAGCCCTCCAATACTTTAAGAGATTTTATCTGCAATGGTCTGTT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CACAAGATTCAGGCAACAGCCCTCCAATACTTTAAGAGATTTTATCTGCAATGGTCTGTT 371
Query 790 ATGCAACATCATCCAAAAGAGATAATGTTAACCTGTGTGTATGCAGCTTGTAAAATAGAG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ATGCAACATCATCCAAAAGAGATAATGTTAACCTGTGTGTATGCAGCTTGTAAAATAGAG 431
Query 850 GAGAATCATGTATCTGCTGAGGAAATTGGGAAAGGGATTAACCAAGATCACCGAATAATT 909
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 432 GAGAATCATGTATCTGCTGAGGAAATTGGGAAAGGGATTAACCAAGATCACCAAATAATT 491
Query 910 CTCAAGTACGAGATGGCTGTTCTTCAGAGTTTGGAATTTGATCTGATTGTTTATGCACCG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CTCAAGTACGAGATGGCTGTTCTTCAGAGTTTGGAATTTGATCTGATTGTTTATGCACCG 551
Query 970 TATCGTGCAATCGAAGGTTTTGTCAACAACATGGAGGAATTTCTTCAAGCTAGAGATGAT 1029
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 TATCGTGCAATCGAAGGTTTTGTCAACAATATGGAGGAATTTCTTCAAGCTAGAGATGAT 611
Query 1030 GAAATCCAAAAACTAGAGAGTTTGCTCAAAGGGGCGACAGCAGAAGCCGATAAAGTTATG 1089
||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 612 CAAATCCAGAAACTGGAGAGTTTACTCAAAGCGGCGACAGCAGAAGCCGATAAAGTTATG 671
Query 1090 CTCACAGATGCTCCACTCCTCTTTCCTCCTGGCCAGTTGGCATTGGCGTCGTTACGTATT 1149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 672 CTCACAGATGCTCCACTCCTCTTTCCTCCTGGCCAGTTGGCATTGGCGTCTTTACGTATT 731
Query 1150 GCAAATGGGGTTCTTGGAGTGATTGACTTTGATAGGTACCTAGAGAACATTGTTTCTCAA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GCAAATGGGGTTCTTGGAGTGATTGACTTTGATAGGTACCTAGAGAACATTGTTTCTCAA 791
Query 1210 CCGAACTCTGAGCACACGACTTCAGAGCTTACAAAGTTACTTGATAACATCGAATATTTG 1269
|| |||||||||||||| ||||||||||| |||||||| |||||| ||||||||| ||||
Sbjct 792 CCAAACTCTGAGCACACAACTTCAGAGCTCACAAAGTTCCTTGATGACATCGAATTTTTG 851
Query 1270 GTAAAGAACTACAAGTGCCCAAGTGAAAAGGACATGAAGCATATCAACCGGAAGCTAAAA 1329
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTAAAGAACTACAAGAAACCAAGTGAAAAGGACATGAAGCATATCAACCGGAAGCTAAAA 911
Query 1330 TCTTGTCTAGGACATAGTTCTTCACATGACGAGAGTAAGAAACGGGAGAAGAGATCAAAA 1389
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 912 TCTTGTCTAGGACATAGTTCTTCACATGACGAGAGTAAGAAACGGGAGAAGAGATCGAAG 971
Query 1390 CACAAGTCCCATAGGAGCTCCAATGATACACCAAACGGGGCACCGCCACCCATAGGTTGA 1449
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 972 CACAAGTCCCATAGGAGCTCCAATGATACACCAAACGGGGCACCG--A----TAGGTTGA 1025
Query 1450 GTTTCTCGTACTGCCATTAG 1469
|||||| || ||||||||||
Sbjct 1026 GTTTCTTGTTCTGCCATTAG 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5