BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27630.1
Length=2247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489567 jgi|Araly1|489567|fgenesh2_kg.6__2701__AT5G27630.1 3000 0.0
Ahg477830 jgi|Araly1|477830|fgenesh2_kg.3__531__AT3G05420.2 1495 0.0
Ahg900335 jgi|Araly1|900335|Al_scaffold_0004_985 220 3e-56
Ahg907815 jgi|Araly1|907815|Al_scaffold_0002_896 217 4e-55
> Ahg489567 jgi|Araly1|489567|fgenesh2_kg.6__2701__AT5G27630.1
Length=2177
Score = 3000 bits (1624), Expect = 0.0
Identities = 1952/2105 (93%), Gaps = 43/2105 (2%)
Strand=Plus/Plus
Query 11 AAATTAGTATTAATCCGAAAACTTGAAACTGTGGCTTCCTCCTCAAATCTCCGATCAACG 70
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 2 AAATTAGTATTAATCCGAAAACTTGAAACTTTGGCTTCTTCCTCAAATCTCCGAT----- 56
Query 71 GAAACAAAATGGCTCACATGGTGAGAGCGAGCTCTGGCCTTTCTTACCCGGAGAGATTCT 130
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 57 ----CAAAATGGCTCACATGGTGAGAGCGAGCTCTGGCCTTGCTTACCCGGAGAGATTCT 112
Query 131 ACGCCGCCGCATCGTACGTCGGCCTCGACGGATCTCAATCGTCGGTCAAACAACTCAGCT 190
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 113 ACGCCGCCGCATCGTACGTTGGCCTCGACGGATCTCAATCGTCGGTGAAACAACTCAGCT 172
Query 191 CCAAATTCTCCAACGATACCTCTTTGCTTCTCTACACGTTGCACCAGCAGGCTACTCTAG 250
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 173 CCAAATTCTCCAACGATACCTCTTTGCTTCTCTACGCGTTGCACCAGCAGGCTACTCTAG 232
Query 251 GACCTTGTAGTATTCCAAAACCGAGTGCGTGGAATCCAGTAGAGCAAAGCAAATGGAAAA 310
||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 233 GACCTTGCAATATTCCAAAACCTAGTGCGTGGAATCCAGTAGAGCAAAGCAAATGGAAAA 292
Query 311 GTTGGCAGGGGCTTGGAACCATGCCCTCCATTGAGGCAATGCGTCTATTTGTGAAAATCT 370
|||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
Sbjct 293 GTTGGCAGGGGCTTGGAACCATGCTCTCCATTGAAGCAATGCGTCTCTTTGTGAAAATTT 352
Query 371 TGGAGGAAGCAGATCCTGGTTGGTATCCAAGGACATCTAACTCTGTTCTTGACCCTGCTG 430
| ||| ||| ||||||||| |||||||||||| |||||||||||||||| || |||||||
Sbjct 353 TAGAGAAAGAAGATCCTGGCTGGTATCCAAGGGCATCTAACTCTGTTCTAGAGCCTGCTG 412
Query 431 TACATGTCCAAATCAATAGCACAAAGGCTGAGCCTAGTTTTGAGAGTGGAGCTTCATTTG 490
|| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 413 TAGATGTCCAAGTCAGTAGCACAAAGGCCGAGCCTAGTTTTGAGAGTGGAGCTTCATTTG 472
Query 491 GTGAGACAAAGACGATTACTTCTGAGGATGGGCGCTTGACAGAAACGCAAGATAAAGATG 550
||||||||||||||||| || | ||||||| ||||||||| | |||||||||||||||||
Sbjct 473 GTGAGACAAAGACGATTTCTACCGAGGATGAGCGCTTGACGGTAACGCAAGATAAAGATG 532
Query 551 TAGTTTTGGAAGACCCAGATACTGTTTCTGTGTATAATCAGTGGACTGCACCACGAACAT 610
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 533 TAGTTTTGGAAGACCCAAATACTGTTTCTGTGTATAATAAGTGGACTGCACCACGAACAC 592
Query 611 CAGGTCAGCCACCAAAAGCCCGATATCAGCATGGAGCAGCGGTTATTCAAGATAAGATGT 670
||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||
Sbjct 593 CAGGTCAGCCACCAAAAGCTCGGTATGAGCATGGAGCAGCGGTTATTCAGGATAAGATGT 652
Query 671 ATATGTATGGTGGAAACCACAACGGCCGTTATCTAGGTGATCTTCATGTTCTGGATTTAA 730
|||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||
Sbjct 653 ATATGTATGGTGGAAACCACAATGGGCGTTATTTAGGTGATCTTCATGTTCTAGATTTAA 712
Query 731 AAAACTGGACTTGGTCAAGAGTTGAAACCAAGGTTGTGACTGGATCACAGGAAACATCAT 790
||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 713 AAAACTGGACTTGGTCAAGAGTTGAAACCAAGGTTGTAACTGAATCACAGGAAACTTCAT 772
Query 791 CTCCAGCAAAACTAACTCACTGTGCTGGTCATTCTTTGATACCATGGGATAA-CCAGCTT 849
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 773 CTCCAGCAAAACTAACTCACTGTGCTGGTCATTCTTTGATACCATGGGA-AAGCAAGCTT 831
Query 850 TTGTCTATCGGTGGTCATACAAAAGATCCTTCAGAATCCATGCCAGTGATGGTCTTTGAT 909
|||||| | |||||||||||||| ||||| ||||||| |||| ||||| || ||||||
Sbjct 832 TTGTCTGTAGGTGGTCATACAAAGGATCCCTCAGAATACATGATAGTGAAGGAATTTGAT 891
Query 910 CTACATTGCTGTTCATGGTCAATCTTAAAGACATACGGGAAGCCACCGATTTCGCGTGGA 969
|| | | |||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 892 CTGCGTAGCTGTTCATGGTCAATCTTAAAGACACACGGGAAGCCACCGATTTCCCGTGGA 951
Query 970 GGTCAGTCAGTGACCCTTGTGGGAAAAAGCTTGGTGATATTTGGTGGCCAGGATGCAAAG 1029
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 952 GGTCAGTCAGCGACCCTTGTGGGAAAAAGCTTGGTGATATTTGGTGGCCAGGATGGAAAG 1011
Query 1030 AGATCGCTTCTGAACGATTTGCATATACTTGATTTAGATACCATGACCTGGGAGGAAATT 1089
| |||||| || |||||||||||||||||| || ||||||||||||||||||| || ||
Sbjct 1012 AAATCGCTCCTAAACGATTTGCATATACTTCATCTAGATACCATGACCTGGGATGAGATG 1071
Query 1090 GATGCCGTGGGTTCTCCTCCAACTCCAAGGTCTGATCATGCTGCTGCAGTGCACGCTGAG 1149
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GATGTCGTGGGTTCTCCTCCAACTCCAAGGTCTGATCATGCTGCTGCAGTGCACGCTGAG 1131
Query 1150 CGTTACCTTCTAATCTTTGGTGGAGGATCACATGCAACTTGTTTTGATGATCTGCACGTC 1209
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1132 CGTTACCTTCTAATCTTTGGTGGAGGATCACATACAACTTGTTTTGATGATCTGCATGTC 1191
Query 1210 CTTGATCTGCAAACTATGGAATGGTCAAGACATACACAACAAGGTGACGCACCAACTCCA 1269
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1192 CTCGATCTGCAAACTATGGAGTGGTCAAGACATACACAACAAGGTGAAGCACCAACTCCA 1251
Query 1270 CGTGCTGGACACGCTGGTGTGACGATTGGGGAAAATTGGTATATTGTTGGTGGTGGAGAT 1329
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1252 CGTGCTGGACACGCCGGTGTGACAATTGGTGAAAATTGGTATATTGTTGGTGGTGGAGAT 1311
Query 1330 AACAAAAGCGGGGCATCTAAGACTGTTGTATTAAATATGTCAACTCTTGCATGGTCAGTT 1389
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1312 AACAAAACCGGGGCATCTAAGACTGTTGTATTAAATATGTCAACTCTTGCGTGGTCAGTA 1371
Query 1390 GTCACTTCAGTCCAAGAACATGTACCTCTCGCTAGTGAGGGATTGAGTTTAGTTGTGAGC 1449
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GTCACTTCAGTCCAAGGACATGTACCTCTCGCTAGTGAGGGATTGAGTTTAGTTGTGAGC 1431
Query 1450 TCATACAATGGAGAAGACATAGTGGTTGCTTTTGGTGGATACAACGGACATTACAACAAT 1509
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1432 TCATACAATGGCGAAGACATAGTTGTTGCTTTTGGTGGATACAACGGACATTACAACAAC 1491
Query 1510 GAAGTGAATGTTCTTAAACCAAGCCACAAATCAAGCTTGAAATCCAAGATTATGGGAGCT 1569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 AAAGTGAATGTTCTTAAACCAAGCCACAAATCAAGCTTGAAATCCAAGATTATGGGAGCT 1551
Query 1570 TCTGCTGTGCCAGATAGTTTTTCCGCTGTTAATAACGCCACGACTAGAGATATTGAGTCT 1629
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1552 TCTGCTGTGCCAGATAGTTTTTCCGCTGTTAATAATGCCACGACTAGAGATATTGAGTTT 1611
Query 1630 GAGATCAAGGTTGAAGGAAAAGCCGACCGCATTATCACAACCCTTAAATCCGAAAAAGAA 1689
|||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1612 GAGATCGAGGTTGAAGGAAAAGCCGAACGCATTATCACAACCCTTGAATCCGAAAAAGAA 1671
Query 1690 GAAGTGGAGGCATCACTCAACAAGGAAAAGATACAAACTCTCCAACTAAAGGAAGAGTTA 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GAAGTGGAGGCATCACTCAACAAGGAAAAGATACAAACTCTCCAACTAAAGGAAGAGTTA 1731
Query 1750 GCAGAGATAGACACACGAAATACAGAGTTATACAAGGAACTTCAATCTGTGCGGAACCAA 1809
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1732 GCAGAGATTGACACACGAAATACAGAGTTGTACAAGGAACTTCAATCTGTGCGGAATCAA 1791
Query 1810 CTTGCAGCGGAACAATCAAGGTGTTTCAAACTAGA-GGT------T-----------G-- 1849
||||||| |||||||||||||||||| || || || ||| | |
Sbjct 1792 CTTGCAGTGGAACAATCAAGGTGTTTGAATCTCGATGGTGAAACATTCCTCTCCAATGTT 1851
Query 1850 -AAGTTGCAGAGCTAAGACAAAAGCTTCAGACAATGGAAACACTTCAAAAGGAACTCGAA 1908
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1852 GAAGTTGCAGAACTAAGACAAAAGCTTCAGACAATGGAAACACTTCAAAAGGAACTTGAA 1911
Query 1909 CTCCTCCAACGTCAAAGAGCCGTTGCGTCTGAACAAGCCGCCACCATGAACGCCAAACGA 1968
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1912 CTCCTCCAACGTCAAAGAGCCGTTGCGTCTGAACAAGTAGCCACCATGAACGCCAAACGA 1971
Query 1969 CAAAGCTCTGGTGGCGTCTGGGGTTGGCTCGCTGGAACTCCTCCGCCTAAAACATGAGTG 2028
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1972 GAGAGCTCTGGTGGCGTCTGGGGTTGGCTCGCTGGAACTCCTCCGCCTAAAACATGA-TC 2030
Query 2029 CCC----ATGAAACtttttt-t--CGGGTAACTCTTTTTT---GTCATTACCAATATCAG 2078
||| |||||| |||||| | | | || ||||||||| |||||||||||||||||
Sbjct 2031 CCCCCCCATGAAATTTTTTTGTTTCCGATACCTCTTTTTTTTTGTCATTACCAATATCAG 2090
Query 2079 TATTT 2083
|||||
Sbjct 2091 TATTT 2095
> Ahg477830 jgi|Araly1|477830|fgenesh2_kg.3__531__AT3G05420.2
Length=2322
Score = 1495 bits (809), Expect = 0.0
Identities = 1306/1543 (85%), Gaps = 46/1543 (3%)
Strand=Plus/Plus
Query 113 CTTACCCGGAGAGATTCTACGCCGCCGCATCGTACGTCGGCCTCGACGGATCTCAATCGT 172
||||||||||||| ||||||||||||||||| |||||||| |||||||||||| | ||||
Sbjct 131 CTTACCCGGAGAGGTTCTACGCCGCCGCATCTTACGTCGGTCTCGACGGATCTGATTCGT 190
Query 173 CGGTC-AAACAAC-TCAGCTCCAAATTCTCCAACGATACCT-CTTTGCTTCTCTACACGT 229
||| | ||| ||| ||| ||| ||||||||| | |||| || | | |||||||| ||
Sbjct 191 CGG-CGAAA-AACGTCATCTCGAAATTCTCCGATGATA-CTGCACTACTTCTCTATGCGC 247
Query 230 TGCACCAGCAGGCTACTCTAGGACCTTGTAGTATTCCAAAACCGAGTGCGTGGA-ATCCA 288
|| |||| ||||||||| ||||||| || | | ||| ||||| ||||| |||| | |||
Sbjct 248 TGTACCATCAGGCTACTGTAGGACCATGCAACACTCCGAAACCTAGTGCATGGAGA-CCA 306
Query 289 GTAGAGCAAAGCAAATGGAAAAGTTGGCAGGGGCTTGGAACCATGCCCTCCATTGAGGCA 348
|| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 307 GTGGAGCAAAGCAAATGGAGAAGTTGGCAGGGACTCGGAACCATGCCCTCCATTGAGGCA 366
Query 349 ATGCGTCTATTTGTGAAAAT-CTTGGAGGAAGCA-GATCCTGGTTGGTATCCAAGGACAT 406
|||||||| ||||||||||| || |||||||| | ||||| ||||||||| ||||| |||
Sbjct 367 ATGCGTCTCTTTGTGAAAATTCT-GGAGGAAG-ATGATCCGGGTTGGTATTCAAGGGCAT 424
Query 407 CTAACTC-TGTTCTTGACCCTG-CTGTACATGTCCAAATCAAT-AGC-A-C-AAAGGCTG 460
|||| | | ||| || |||| | ||| |||||||||| ||| || | | |||| ||
Sbjct 425 CTAA-TGATATTCCAGATCCTGTC-GTAGATGTCCAAATTAATCAGAGAACGAAAGA-TG 481
Query 461 AGCCTAGTT-TTGAGAGTGG-AGCTTCATTTGGTGAGACAAAGACGATTACTTCTGAGGA 518
||||| ||| |||||| ||| | || ||||||||||||||||||| ||| || ||||| |
Sbjct 482 AGCCT-GTTGTTGAGAATGGGAACT-CATTTGGTGAGACAAAGACAATTTCTACTGAGAA 539
Query 519 TGGGCGCTTGACAGAAACGCAAGATAAAGATGTAGTTTTGGAAGACCCAGATACTGTTTC 578
||| || ||| | ||||| || |||||||||||||| | |||||| || ||||||||||
Sbjct 540 TGGACGTTTGGCTGAAACCCAGGATAAAGATGTAGTCTCAGAAGACTCAAATACTGTTTC 599
Query 579 TGTGTATAATCAGTGGACTGCACCACGAACATCAGGTCAGCCA-CCAAAAGCCCGATATC 637
||| ||||| |||||||||||||| | |||||||||||||| | ||||||||||| || |
Sbjct 600 TGTATATAACCAGTGGACTGCACCCCAAACATCAGGTCAGC-AGCCAAAAGCCCGTTA-C 657
Query 638 -AGCATGGAGCAGCGGTTATTCAAGATAAGATGTATATGTATGGTGGAAACCACAACGGC 696
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 658 GAGCATGGAGCAGCAGTTATTCAAGATAAGATGTATATATATGGTGGAAATCACAATGGC 717
Query 697 CGTTATCTAGGTGATCTTCATGTTCTGGATTTAAAAAACTGGACTTGGTCAAGAGTTGAA 756
||||| || ||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 718 CGTTACCTTGGTGATCTTCATGTTCTAGATTTAAAAAATTGGAGTTGGTCAAGAGTTGAA 777
Query 757 ACCAAGGTTGTGACTGGAT-CACAGGAAACATCATCTCCAGCAAAACTAACTCACT-GTG 814
|||||||||| |||| || |||||||||||||| ||||| || | || ||| || |||
Sbjct 778 ACCAAGGTTGCAACTG-ATGCACAGGAAACATCAACTCCAACATTATTAGCTC-CTTGTG 835
Query 815 CTGGTCATTCTTTGATACCATGGGATAACCAGCTT-TTGTCTATCGGTGGTCATACAAAA 873
||||||||||||||||| ||||||| ||| |||| || ||||||||||||||||||||
Sbjct 836 CTGGTCATTCTTTGATAGCATGGGACAACAAGCTGCTT-TCTATCGGTGGTCATACAAAG 894
Query 874 GATCCTTCAGAATCCATGCCAGTGATGGTCTTTGATCTACATTGCTGTTCATGGTCAATC 933
||||| |||||||| |||| ||||| ||||||||||| ||| | || ||||||||||
Sbjct 895 GATCCCTCAGAATCTATGCAAGTGAAGGTCTTTGATCCCCATACCAGTACATGGTCAATG 954
Query 934 TTAAAGACATACGGGAAGCCACCGATTTCGCGTGGAGGTCAGTCAGTGACCCTTGTGGGA 993
||||||||||| || || |||||| |||| |||||||| |||||||| || | |||||
Sbjct 955 TTAAAGACATATGGAAAACCACCGGTTTCACGTGGAGGCCAGTCAGTTACAATGGTGGGT 1014
Query 994 AAAAGCTTGGTGATATTTGGTGGCCAGGATGCAAAGAGATCGCTTCTGAACGATTTGCAT 1053
|||| ||||||||||||||| || || |||||||||||||| ||||||||||||||||||
Sbjct 1015 AAAACCTTGGTGATATTTGGCGGGCAAGATGCAAAGAGATCACTTCTGAACGATTTGCAT 1074
Query 1054 ATACTTGATTTAGATACCATGACCTGGGAGGAAATTGATGCCGTGGGT-TCTCCTCCAAC 1112
||||||||| |||| || ||||||||||| || || |||||||||||| | || |||| |
Sbjct 1075 ATACTTGATCTAGACACGATGACCTGGGATGAGATAGATGCCGTGGGTGTATC-TCCATC 1133
Query 1113 TCCAAGGTCTGATCATGCTGCTGCAGTGCACGCTGAGCGTTACCTTCTAATCTTTGGTGG 1172
||| |||||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 1134 TCCGAGGTCTGATCATGCTGCTGCAGTGCATGCAGAACGTTACCTTCTTATCTTTGGTGG 1193
Query 1173 AGGATCACATGCAACTTGTTTTGATGATCTGCACGTCCTTGATCTGCAAACTATGGAATG 1232
|||||||||||||| ||||| ||||| ||||| ||||||||| |||| |||||||| ||
Sbjct 1194 GGGATCACATGCAACCTGTTTCGATGACCTGCATGTCCTTGATTTGCAGACTATGGAGTG 1253
Query 1233 GTCAAGAC-ATACACAACAAGGTGACGCACCAACTCCACGTGCTGGACACGCTGGTGTGA 1291
|||||||| | ||||||||||||| |||||||||||| | |||||||| ||||| ||||
Sbjct 1254 GTCAAGACCAG-CACAACAAGGTGATGCACCAACTCCAAGAGCTGGACATGCTGGCGTGA 1312
Query 1292 CGATTGGGGAAAATTGGTATATTGTTGGTGGTGGAGATAACAAAAGCGGGGCATCTAAGA 1351
| |||||||| || |||| |||||||||||| || |||||||| || |||||||| |||
Sbjct 1313 CAATTGGGGAGAACTGGTTTATTGTTGGTGGCGGTGATAACAAGAGTGGGGCATCGGAGA 1372
Query 1352 CTGTTGTATTAAATATGTCAACTCTTGCATGGTCAGTTGTCACTTCAGTCCAAGAACATG 1411
||||||| |||| |||||||||||| ||||||| || || ||||||| |||| || ||
Sbjct 1373 GTGTTGTACTAAACATGTCAACTCTTTCATGGTCGGTAGTTGCTTCAGTTCAAGGACGTG 1432
Query 1412 TACCTCTCGCTAGTGAGGGATTGAGTTTAGTTGTGAGCTCATACAATGGAGAAGACATAG 1471
||||||| ||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||
Sbjct 1433 TACCTCTTGCTAGCGAGGGATTAAGTTTAGTGGTGAGTTCATACAATGGTGAAGATGTAC 1492
Query 1472 TGGTTGCTTTTGGTGGATACAACGGACATTACAACAATGAAGTGAATGTTCTTAAACCAA 1531
| || ||||||||||||||||| |||| ||||||||| ||| | ||| ||||||||||||
Sbjct 1493 TAGTCGCTTTTGGTGGATACAATGGACGTTACAACAACGAAATTAATCTTCTTAAACCAA 1552
Query 1532 GCCACAAATCAAGC-TTG-AAATCCAAGATTATGGGAGCTTCTGCTGTGCCAGATAGTTT 1589
|||||||||||| | ||| ||| | |||| | ||| ||| || | |||||| |||| |
Sbjct 1553 GCCACAAATCAA-CATTGCAAA-CAAAGACTCTGGAAGCGCCT--T-TGCCAGGTAGTCT 1607
Query 1590 TTCCGCTGTTAATAACGCCACGACTAGAGATATTGAGTCTGAG 1632
||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 1608 TTCTGCTGTTAATAACGCCACAACCAGAGACATTGAGTCTGAG 1650
> Ahg900335 jgi|Araly1|900335|Al_scaffold_0004_985
Length=240
Score = 220 bits (119), Expect = 3e-56
Identities = 138/147 (94%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 1639 GTTGAAGGAAAAGCCGACCGCATTATCACAACCCTTAAATCCGAAAAAGAAGAAGTGGAG 1698
||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1 GTTCAAGGAAAAGCCGAACGCATTATCACAACCCTTAAATTCGAAAAAGAAGAA--GGAG 58
Query 1699 GCATCACTCAACAAGGAAAAGATACAAACTCTCCAACTAAAGGAAGAGTTAGCAGAGATA 1758
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 59 ACATCACTCAACAAGGAAAAGATACTAACTCTTCAACTAAAGGAAGAGTTAGCAGAGATA 118
Query 1759 GACACACGAAATACAGAGTTATACAAG 1785
|||||||||||||||||||| ||||||
Sbjct 119 GACACACGAAATACAGAGTTGTACAAG 145
> Ahg907815 jgi|Araly1|907815|Al_scaffold_0002_896
Length=492
Score = 217 bits (117), Expect = 4e-55
Identities = 140/151 (93%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 1635 CAAGGTTGAAGGAAAAGCCGACCGCATTATCACAACCCTTAAATCCGAAAAAGAAGAAGT 1694
||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 246 CAAAGTTCAAGGAAAAGCCGAACGCATTATCACAACCCTTAAATTCGAAAAAGAAGAA-- 303
Query 1695 GGAGGCATCACTCAACAAGGAAAAGATACAAACTCTCCAACTAAAGGAAGAGTTAGCAGA 1754
|||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 304 GGAGACATCACTCAACAAGGAAAAGATACTAACTCTTCAACTAAAGGAAGAGTTAGCAGA 363
Query 1755 GATAGACACACGAAATACAGAGTTATACAAG 1785
|||||| ||||||||||||||||| ||||||
Sbjct 364 GATAGAGACACGAAATACAGAGTTGTACAAG 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84598434145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5