BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27650.1
Length=3461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317405 jgi|Araly1|317405|fgenesh1_pm.C_scaffold_3000421 667 0.0
Ahg347939 jgi|Araly1|347939|fgenesh1_pg.C_scaffold_5001331 355 1e-96
Ahg357219 jgi|Araly1|357219|fgenesh1_pg.C_scaffold_8001006 255 1e-66
Ahg891948 jgi|Araly1|891948|Al_scaffold_0007_3934 71.3 5e-11
> Ahg317405 jgi|Araly1|317405|fgenesh1_pm.C_scaffold_3000421
Length=2664
Score = 667 bits (361), Expect = 0.0
Identities = 886/1133 (78%), Gaps = 61/1133 (5%)
Strand=Plus/Plus
Query 510 GAGAAAAAAGGAGTTTCGGATTATAAATCTCT-TTTATCTGAGTTTGATGATTATGTTGC 568
|||||||| ||||| |||| || |||||| | ||||| |||||||| ||||||||||
Sbjct 4 GAGAAAAATCGAGTTCCGGACTACAAATCT-TACTTATCCGAGTTTGACCATTATGTTGC 62
Query 569 AAGTGAGAAAATGGGTTCTGGAGTTTCG-AGGGCATTGAGTTATGGGTTTGAAGTTGGAG 627
||| |||||||||||||||||| || | | ||||||| | |||||||||||||| ||||
Sbjct 63 AAGCGAGAAAATGGGTTCTGGAAATT-GTAAGGCATTGTGCTATGGGTTTGAAGTGGGAG 121
Query 628 ATTTGGTTTGGGGAAAGGTAAAGTCTCATCCTTGGTGGCCTGGTCATATATTCAATGAAG 687
|| |||| ||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 122 ATATGGTATGGGGAAAGGTTAAGTCACATCCGTGGTGGCCAGGTCAGATATTCAATGAAG 181
Query 688 CTTTTGCGTCTCCTTCTGTTCGTCGTATGAGGAGGATTGATCATGTTCTTGTTGCGTTT- 746
| ||||||||||| |||||||||||||||| || ||| | | | ||||| ||||| |||
Sbjct 182 CGTTTGCGTCTCCCTCTGTTCGTCGTATGAAGAAGATGGGTTACGTTCTGGTTGC-TTTC 240
Query 747 TTCGGTGATAGTAGTTATGGTTGGTTTGATCCTGCTGAGCTTATTCCTTTCGAACCGAAT 806
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 241 TTTGGAGATAGTAGTTATGGTTGGTTTGATCCTGCTGAGCTTATTCCTTTTGAACCTCAT 300
Query 807 TTAG-AGGAGAAATCACAGCAGACG-GTTTCGAAG-CATTTTGTGAGAGCTGTGGAGGAA 863
||| || |||| || ||||| || ||| | | | || |||| | ||||||||| |||
Sbjct 301 GTAGCAG-AGAATTCGCAGCAAACTAGTT-C-AGGTCACTTTGCAAAAGCTGTGGAAGAA 357
Query 864 GCCAAGGATGAGGCGAG-TAGAAGGTCAGCTCTTGGTTTGACTTGTAAATGTCGGAATCC 922
|| | |||||| | || |||||||||||||||||| ||||||||||| ||||||||||
Sbjct 358 GCTATGGATGAA-CTAGGTAGAAGGTCAGCTCTTGGGTTGACTTGTAAGTGTCGGAATCA 416
Query 923 TTATAACTTTAGGCCTAGTAATGTGGAAGATTACTTTGCTGTTGATGTGCCTGATTACGA 982
||||||||| |||||| |||||| ||| |||||||||||| || ||||||||||| ||
Sbjct 417 GTATAACTTTGGGCCTACTAATGTTCAAGGTTACTTTGCTGTAGACGTGCCTGATTATGA 476
Query 983 GCTTCAAGCCGTTTACTCTGT-TGATCAGATTAAGAATTCTAGGGATAAGTTTTT-ACCC 1040
|| ||||| ||||||||| | | | |||||| |||| ||||||||| |||||| | |
Sbjct 477 TCTCCAAGCTGTTTACTCT-TCTAAGCAGATTCAGAAAGCTAGGGATA-GTTTTTCATCT 534
Query 1041 GCTGAAAC-CATTTCGTTT-GTGAAGCAAT-TGGCGTTAGCACCTCAAGAGTGTGATCCA 1097
| | |||| | | | ||| ||||||| | || | ||||||||||||||||||||| ||
Sbjct 535 GTTCAAACTC-TAGC-TTTCGTGAAGCGGTGTG-CATTAGCACCTCAAGAGTGTGATACA 591
Query 1098 GACAGTTTAAAGT-TTATGAAGAAGAAAGCAGTGGTTTTTGCTTTCCGCAAGTCAGTGTT 1156
||||| ||||||| || | ||||||||| || ||||| ||| ||||| | | |||||||
Sbjct 592 GACAGCTTAAAGTCTT-TCCAGAAGAAAGTAGCGGTTTGTGCATTCCGTAGGGCAGTGTT 650
Query 1157 TGAGGAGTTTGATGAAACTTATGCACAGGCCTTT-GGGACAAAATCACCCCGCAGTTCAG 1215
|||||||||||||||||| |||| ||| ||||| ||| ||| ||| | ||| ||
Sbjct 651 TGAGGAGTTTGATGAAACATATGAACAAGCCTTCAGGG-CAAGATCTGTATACTGTTTAG 709
Query 1216 TGA-GTACGC-TGGAACC-TCATAATAGAGCACCGCCT-CGAGCTCCC-TTGAGTGGCCC 1270
||| | || | || |||| | |||||||||||| ||| |||| |||| |||| |||| |
Sbjct 710 TGAAG-ACACATG-AACCATT-TAATAGAGCACC-CCTTCGAG-TCCCCTTGACTGGCTC 764
Query 1271 ACTGGTCA-TAGCAGAAACGCTAGGTGACCTTAAGAGCTCTAAAAAACCCACAAAGGTTA 1329
| |||||| | |||||||| || || ||| |||||||||| |||| | | || || |
Sbjct 765 ATTGGTCAGT-GCAGAAACTCTGGGCAACCCAAAGAGCTCTACAAAAGCTATGAATGTAA 823
Query 1330 AGG-TCTCTaaaaaaaaaGACAAGTATCTTCTCAAACGAAGGGATGAAGCTGGTGATAAG 1388
||| | |||| ||| | || || |||||| |||| |||| || | ||||||||||| |
Sbjct 824 AGGAT-TCTACTAAACATGAAAAAAATCTTCCCAAAAGAAGAGAGGGAGCTGGTGATATG 882
Query 1389 TCTGTTCAGTTTGGCGAAATTGAAGCAAGTTCAGAAGCTTCTCATATCCAGGGAATTGAT 1448
| ||||| |||||| | | ||| || | | |||||| || ||||| | |
Sbjct 883 ACAGTTCAATTTGGCCAGGTCCAAG-AA-T-C------TTCTCAGATTCAGGGCAGCAAC 933
Query 1449 GGATCTTTGGATGGGGATTTTGGGCTGCAGAGAAG-AGCTCCGACGCTTC--AAACTCCA 1505
|||||| | ||||||| || ||||||||||| | |||| || | | |||||||
Sbjct 934 AGATCTTCAGCTGGGGATCATGTACTGCAGAGAAGGA-CTCC-ACA-TACCCAAACTCCC 990
Query 1506 ATGAAAGATGAGAAGTCTGGGATCGTCAGCATGGATTTTGCCTCTTCAAATAC-AGCTAT 1564
| |||| ||||| || | ||| | ||||||||| | || ||||||||| | | |||
Sbjct 991 AGGAAACATGAGCAGACCGGGCTTGTCAGCATGAACTTCACCTCTTCAAGTGGTAA-TAT 1049
Query 1565 TCCTGGTAAAGAATTT-TCAGCTTCAAAGCCCTCTCTTGATGAAGAAAAGGGT 1616
|||||| |||||| | || | |||||||| ||||| ||||| || ||||||
Sbjct 1050 TCCTGG-AAAGAAATCCTCTGTTTCAAAGCTCTCTCGGGATGATGACAAGGGT 1101
> Ahg347939 jgi|Araly1|347939|fgenesh1_pg.C_scaffold_5001331
Length=453
Score = 355 bits (192), Expect = 1e-96
Identities = 250/279 (90%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 361 AGATTAAAAGCGAGGATGTTTTAATTGATAAGGATGATGAGAGTTCTGAGGTTAaagaag 420
||||||||||| | ||| ||||||||||| ||| |||||||| |||| || |||||||||
Sbjct 26 AGATTAAAAGCCAAGATATTTTAATTGATGAGGGTGATGAGATTTCTCAGCTTAAAGAAG 85
Query 421 aagaagaagaagaagaTGGCTCTGATGATCAATCTAGTGAGCTTGGTTCTGAAGCTGATG 480
|| |||||||||| ||| |||| ||||||||||||||||| |||| ||||||| |||||
Sbjct 86 AAAAAGAAGAAGATGATTGCTCCGATGATCAATCTAGTGAACTTGATTCTGAATTTGATG 145
Query 481 AGAAGGAATTAGATTTGGGTTTGAAGGAAGAGAAAAAAGGAGTTTCGGATTATAAATCTC 540
|||||||||| |||| | |||||||||||||||| |||||| || | ||| |||||||
Sbjct 146 AGAAGGAATTGGATTCAGATTTGAAGGAAGAGAAACGAGGAGTATCTGTTTACAAATCTC 205
Query 541 TTTTATCTGAGTTTGATGATTATGTTGCAAGTGAGAAAATGGGTTCTGGAGTTTCGAGGG 600
| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 206 TCTCATCTGAGTTTGATGATTATGTTGCGAGTGAGAAAATGGGTTCTGGAGTTTCGAGGG 265
Query 601 CATTGAGTTATGGGTTTGAAGTTGGAGATTTGGTTTGGG 639
|||||||||||||||||||||||||||||||||||||||
Sbjct 266 CATTGAGTTATGGGTTTGAAGTTGGAGATTTGGTTTGGG 304
Score = 122 bits (66), Expect = 1e-26
Identities = 76/80 (95%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 687 GCTTTTGCGTCTCCTTCTGTTCGTCGTATGAGGAGGATTGATCATGTTCTTGTTGCGTTT 746
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCTTTTGCATCTCCTTCTGTTCGTCGTATGAGGAGGATTGATCATGTTCTTGTTGCGTTT 363
Query 747 TTC-GGTGATAGTAGTTATG 765
| | || |||||||||||||
Sbjct 364 T-CAGG-GATAGTAGTTATG 381
> Ahg357219 jgi|Araly1|357219|fgenesh1_pg.C_scaffold_8001006
Length=1548
Score = 255 bits (138), Expect = 1e-66
Identities = 176/194 (91%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 394 ATGATGAGAGTTCTGAGGTTAaagaagaagaagaagaagaagaTGGCTCTGATGATCAAT 453
||||||| ||||||||| |||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1355 ATGATGATAGTTCTGAGCTTAAAGAAGAAGAAGAAGAAGATGATTGCTCCGATGATCAAT 1414
Query 454 CTAGTGAGCTTGGTTCTGAAGCTGATGAGAAGGAATTAGA-TTTGGGTTTGAAGGAAGAG 512
||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||||
Sbjct 1415 CTAGTGAGCTTGGTTCTGAAGCTGATGAGAAGGAATT-GAATTTAGATTTGAAGGAAGAG 1473
Query 513 AAAA-AAGGAGTTTCGGATTATAAATCTCTTTTATCTGAGTTTGATGATTATGTTGCAAG 571
||| ||| | | || | ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1474 AAACGAAGAA-TATCTGTTTACAAATCTCTTTTATCTGAGTTTGATGATTATGTTGCGAG 1532
Query 572 TGAGAAAATGGGTT 585
||||||||||||||
Sbjct 1533 TGAGAAAATGGGTT 1546
> Ahg891948 jgi|Araly1|891948|Al_scaffold_0007_3934
Length=174
Score = 71.3 bits (38), Expect = 5e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 142 ATGCTGTGATTGTTCAACAAACGGATTCGATTCAGGATCCTAAG 185
|||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGCTGAGATTGCTCAACAAACGGATTCGATTCAGGATCCTAAG 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130689705682
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5