BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27660.1
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489562 jgi|Araly1|489562|fgenesh2_kg.6__2696__AT5G27660.1 1788 0.0
> Ahg489562 jgi|Araly1|489562|fgenesh2_kg.6__2696__AT5G27660.1
Length=1301
Score = 1788 bits (968), Expect = 0.0
Identities = 1144/1230 (93%), Gaps = 8/1230 (1%)
Strand=Plus/Plus
Query 54 TTGGATTTGCGATGATGAATTTTCTGAGAAGAGCTG--T-ATCATCTTCTAAAAGAAGCG 110
|||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 1 TTGGATTTACGATGATGAATTTTCTGAGAAGAGCTGTATCATCATCTTCTAAACGAAGCG 60
Query 111 AGCTTATTCGCATCATTTCTGTTGCTACTGCTACTTCTGGAATTTTATATGCTAGTACTA 170
| |||||||| ||| | |||||||||| ||||||||||||||| ||||||||| || ||
Sbjct 61 AACTTATTCGTATCGTCGCTGTTGCTACCGCTACTTCTGGAATTGTATATGCTAATAGTA 120
Query 171 ATCCAGATGCAAGAACTCGAGTATCGCTTGCTATACCTGAATCTGTTCGAGAATCTTTGT 230
|||||||||||||||| || ||||||||||||| |||||||| ||||| |||||| |||
Sbjct 121 ATCCAGATGCAAGAACGAGAATATCGCTTGCTATTCCTGAATCGGTTCGGGAATCTCTGT 180
Query 231 CGTTACTGCCTTGGCAGATTTCACCGGGTTTGATTCATCGTCCTGAGCAAAGCTTATTCG 290
||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 181 TGTTGCTGCCTTGGCGGATTTCACCGGGTTTGATTCATCGTCCTGATCAAAGCTTGTTCG 240
Query 291 GAAATTTCGTGTTTTCTTCGAGAGTTAGTCCGAAATCAGAAGCACCTATAAATGATGAGA 350
||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 241 GAAATTTCGCGTTTTCTTCGAGAGTTAGTCCAAAATCAGAAGCAGCTGTAAATGATGAGA 300
Query 351 AGGGAGTTTCTGTTGAAGCTTCGGATAGTAGTTCGAAACCAAGTAATGGCTACTTAGGGA 410
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 301 AGGGAGTTCCTGTTGAAGCTTCGG--A-TAGTTCGAAACCAAGTAATGGCTACTTAGGGA 357
Query 411 GAGATACTATAGCCAATGCGGCTGCTAGAATTGGACCAGCGGTTGTCAATCTTTCGGTTC 470
||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||
Sbjct 358 GAGATACTATAGCCAATGCTGCTGCTAGAGTCGGACCAGCGGTTGTCAATCTATCGGTTC 417
Query 471 CTCAGGGTTTCCATGGGATATCTATGGGGAAAAGTATCGGTTCTGGAACGATCATTGATG 530
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 418 CTCAGGGTTTCCATGGGATTTCTATGGGAAAAAGTATCGGTTCTGGAACTATCATTGATG 477
Query 531 CTGATGGCACGATACTGACTTGCGCTCATGTTGTAGTTGATTTTCAGAACATTCGTCATT 590
|||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 478 CTGATGGCACGATATTGACTTGCGCTCATGTTGTAGTCGATTTTCAAAACATTCGTCAAT 537
Query 591 CTTCTAAAGGGAGGGTAGATGTGACGTTGCAAGATGGTAGGACGTTTGAGGGTGTGGTGG 650
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CATCAAAAGGGAGAGTTGATGTGACGTTGCAAGATGGTAGGACGTTTGAGGGTGTGGTGG 597
Query 651 TGAACGCTGATTTACAATCCGACATTGCATTAGTGAAGATAAAGTCAAAGACGCCATTGC 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGAACGCTGATTTACAATCCGACATTGCATTAGTGAAGATAAAGTCAAAGACGCCATTGC 657
Query 711 CAACTGCTAAACTTGGTTTTTCGAGTAAGCTTCGTCCTGGAGACTGGGTAATAGCGGTAG 770
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 658 CAACTGCGAAACTTGGTTTTTCGAGTAAGCTTCGTCCTGGGGACTGGGTAATAGCTGTGG 717
Query 771 GTTGTCCTCTGTCTCTCCAGAACACAGTAACTGCTGGTATTGTCAGTTGTGTTGATCGCA 830
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 718 GTTGTCCTCTTTCTCTCCAGAACACAATAACTGCTGGTATTGTCAGCTGTGTTGATCGCA 777
Query 831 AAAGCAGTGATTTGGGTTTAGGAGGCAAACATAGAGAGTATCTCCAAACAGACTGCT-CG 889
|||||||||||||||| |||||||||| || |||||| ||||||||||||||||| | |
Sbjct 778 AAAGCAGTGATTTGGGATTAGGAGGCACACGTAGAGAATATCTCCAAACAGACTG-TGCA 836
Query 890 ATCAATGCGGGAAACTCTGGTGGGCCTCTTGTAAATTTGGATGGGGAAGTGATTGGTGTT 949
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 837 ATCAATGCGGGAAACTCTGGTGGGCCTCTCGTAAATTTGGATGGAGAAGTGATTGGTGTT 896
Query 950 AATATCATGAAAGTTTTAGCTGCAGATGGTCTTGGATTTTCCGTGCCAATTGACTCGGTA 1009
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 AATATCATGAAAGTTTTAGCTGCGGATGGTCTTGGATTTTCCGTGCCAATTGACTCGGTA 956
Query 1010 TCTAAAATCATCGAGCATTTCAAGAAGAGTGGTAGAGTTATTCGGCCATGGATTGGGCTC 1069
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 TCCAAAATCATCGAGCATTTCAAGAAGAGTGGTAGAGTTATTCGGCCATGGATTGGGTTA 1016
Query 1070 AAAATGGTCGAACTCAATAACTTGATCGTTGCTCAGCTAAAAGAACGAGACCCAATGTTT 1129
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1017 AAAATGATCGAACTCAATAAAATGATCATTGCTCAGCTAAAAGAACGAGACCCAATGTTT 1076
Query 1130 CCTGATGTCGAAAGAGGCGTTCTTGTTCCTACGGTGATTCCGGGATCACCGGCTGATCGA 1189
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 CCTGACGTCGAAAGAGGCATTCTTGTTCCTACGGTGATTCCGGGATCACCAGCTGATCGA 1136
Query 1190 GCTGGCTTCAAACCAGGAGATGTTGTTGTGAGATTTGATGGGAAGCCGGTGATAGAGATA 1249
|||||||| |||||||| |||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1137 GCTGGCTTTAAACCAGGTGATGTTGTTGTGAGATTTGACGGGAAGCCGATAATAGAGATA 1196
Query 1250 ATGGACGACAGAGTTGGGAAGAGGATGCAA 1279
|| ||||||||| | || ||| ||||||||
Sbjct 1197 ATAGACGACAGAATCGGAAAGCGGATGCAA 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5