BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27670.1 Length=790 Score E Sequences producing significant alignments: (Bits) Value Ahg489561 jgi|Araly1|489561|fgenesh2_kg.6__2695__AT5G27670.1 761 0.0 > Ahg489561 jgi|Araly1|489561|fgenesh2_kg.6__2695__AT5G27670.1 Length=723 Score = 761 bits (412), Expect = 0.0 Identities = 618/707 (87%), Gaps = 55/707 (8%) Strand=Plus/Plus Query 74 TTTTGGAGCTTTTGAACAATGGAGTCATCACAAGCAACGACGAAGCCAACGAGAGGAGCA 133 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || Sbjct 55 TTTTGGAGCTTTTGAAAAATGGAGTCATCACAAGCAACGACGAAGCCAGCGAGAGGTGCC 114 Query 134 GGAGGAAGGAAAGGTGGAGATAGGAAGAAGAGTGTTA-GTAAATCTGTTAAAGCTGGTCT 192 |||||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||| Sbjct 115 GGAGGAAGAAAAGGAGGAGATAGGAAGAAGAGTGTTACG-AAATCTGTTAAAGCTGGTCT 173 Query 193 TCAATTTCCCGTTGGTCGTATCGCTCGTTACTTGAAGAAAGGTCGGTACGCTCTCCGATA 252 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 174 TCAATTTCCCGTTGGTCGTATCGCTCGTTACTTGAAGAAAGGTCGTTACGCTATCCGATA 233 Query 253 CGGTTCCGGTGCTCCGGTTTACCTCGCCGCCGTTCTCGAATACCTAGCCGCCGAGGTACT 312 |||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 234 CGGTGCCGGTGCTCCGGTTTACCTCGCCGCTGTTCTTGAATACCTCGCCGCCGAGGTTCT 293 Query 313 TGAGCTAGCTGGGAACGCAGCGAGAGATAATAAGAAGAACAGGATAAACCCTAGGCATCT 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 TGAGCTAGCTGGGAACGCAGCGAGAGATAATAAGAAGAACAGGATAAACCCTAGGCATCT 353 Query 373 ATGTTTAGCGATAAGGAACGATGAGGAATTGGGGAGATTGCTTCATGGAGTTACTATTGC 432 ||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||| Sbjct 354 TTGTTTAGCGATAAGGAATGATGAAGAATTGGGGAAATTGCTTCATGGAGTTACGATTGC 413 Query 433 TAGTGGTGGTGTTCTTCCAAACATTAATCCAGTTCTTCTTCCTAAGAAATCAACAGCTTC 492 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 414 AAGTGGTGGTGTTCTTCCAAACATTAATCCAGTTCTTCTTCCTAAGAAATCTTCAGCTGC 473 Query 493 TTCTTCTCAAGCGGAGAAAGCTTC---TGCTACCAAATCTCCTAAGAAGGCTTGATAAAG 549 | | |||||||||| |||||||||||||||||| |||||||||||| Sbjct 474 T---------G---AGAAAGCTTCACCTGCTACCAAATCTCCTAAAAAGGCTTGATAA-- 519 Query 550 AATAGTATCGATGTTGCTTTTTGGTTATATTCGGATCTTAGATgaa-gaagaag-aagaa 607 | | | || | || |||||||||||| ||| ||| ||||||| ||||| Sbjct 520 --T--T-T---TG--G-TT-------ATATTCGGATCT-AGAAGAAAGAAGAAGGAAGAA 560 Query 608 gaag-a-aA-CAACTTGTTTTTT------GTTTTAGAGGATTTGTGTAGGTAT-CTGAAA 657 |||| | || || |||||||||| ||||||| |||||||||||||| | |||||| Sbjct 561 GAAGGAGAAACATCTTGTTTTTTTTTTTTGTTTTAGGGGATTTGTGTAGGTTTTCTGAAA 620 Query 658 TCTTCTTCTCTTTGTTTTGGTTTGTCTTATGTAAAAACCATGGGAAGATGATTATGT-TT 716 ||||||||||| ||||||||||||||| |||||||| |||| ||||||||||||||| || Sbjct 621 TCTTCTTCTCTGTGTTTTGGTTTGTCT-ATGTAAAA-CCATTGGAAGATGATTATGTGTT 678 Query 717 GTTAACGCAATTTGTAATGGAAAATAATTAAGTTCTGGGATTAGTAA 763 ||| || |||||||||| |||||||| ||| |||| |||||||||| Sbjct 679 -TTA-CGGAATTTGTAATCGAAAATAACTAATTTCTTGGATTAGTAA 723 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29164031505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5