BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27670.1
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489561 jgi|Araly1|489561|fgenesh2_kg.6__2695__AT5G27670.1 761 0.0
> Ahg489561 jgi|Araly1|489561|fgenesh2_kg.6__2695__AT5G27670.1
Length=723
Score = 761 bits (412), Expect = 0.0
Identities = 618/707 (87%), Gaps = 55/707 (8%)
Strand=Plus/Plus
Query 74 TTTTGGAGCTTTTGAACAATGGAGTCATCACAAGCAACGACGAAGCCAACGAGAGGAGCA 133
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 55 TTTTGGAGCTTTTGAAAAATGGAGTCATCACAAGCAACGACGAAGCCAGCGAGAGGTGCC 114
Query 134 GGAGGAAGGAAAGGTGGAGATAGGAAGAAGAGTGTTA-GTAAATCTGTTAAAGCTGGTCT 192
|||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 115 GGAGGAAGAAAAGGAGGAGATAGGAAGAAGAGTGTTACG-AAATCTGTTAAAGCTGGTCT 173
Query 193 TCAATTTCCCGTTGGTCGTATCGCTCGTTACTTGAAGAAAGGTCGGTACGCTCTCCGATA 252
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 174 TCAATTTCCCGTTGGTCGTATCGCTCGTTACTTGAAGAAAGGTCGTTACGCTATCCGATA 233
Query 253 CGGTTCCGGTGCTCCGGTTTACCTCGCCGCCGTTCTCGAATACCTAGCCGCCGAGGTACT 312
|||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 234 CGGTGCCGGTGCTCCGGTTTACCTCGCCGCTGTTCTTGAATACCTCGCCGCCGAGGTTCT 293
Query 313 TGAGCTAGCTGGGAACGCAGCGAGAGATAATAAGAAGAACAGGATAAACCCTAGGCATCT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGAGCTAGCTGGGAACGCAGCGAGAGATAATAAGAAGAACAGGATAAACCCTAGGCATCT 353
Query 373 ATGTTTAGCGATAAGGAACGATGAGGAATTGGGGAGATTGCTTCATGGAGTTACTATTGC 432
||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||
Sbjct 354 TTGTTTAGCGATAAGGAATGATGAAGAATTGGGGAAATTGCTTCATGGAGTTACGATTGC 413
Query 433 TAGTGGTGGTGTTCTTCCAAACATTAATCCAGTTCTTCTTCCTAAGAAATCAACAGCTTC 492
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 414 AAGTGGTGGTGTTCTTCCAAACATTAATCCAGTTCTTCTTCCTAAGAAATCTTCAGCTGC 473
Query 493 TTCTTCTCAAGCGGAGAAAGCTTC---TGCTACCAAATCTCCTAAGAAGGCTTGATAAAG 549
| | |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 474 T---------G---AGAAAGCTTCACCTGCTACCAAATCTCCTAAAAAGGCTTGATAA-- 519
Query 550 AATAGTATCGATGTTGCTTTTTGGTTATATTCGGATCTTAGATgaa-gaagaag-aagaa 607
| | | || | || |||||||||||| ||| ||| ||||||| |||||
Sbjct 520 --T--T-T---TG--G-TT-------ATATTCGGATCT-AGAAGAAAGAAGAAGGAAGAA 560
Query 608 gaag-a-aA-CAACTTGTTTTTT------GTTTTAGAGGATTTGTGTAGGTAT-CTGAAA 657
|||| | || || |||||||||| ||||||| |||||||||||||| | ||||||
Sbjct 561 GAAGGAGAAACATCTTGTTTTTTTTTTTTGTTTTAGGGGATTTGTGTAGGTTTTCTGAAA 620
Query 658 TCTTCTTCTCTTTGTTTTGGTTTGTCTTATGTAAAAACCATGGGAAGATGATTATGT-TT 716
||||||||||| ||||||||||||||| |||||||| |||| ||||||||||||||| ||
Sbjct 621 TCTTCTTCTCTGTGTTTTGGTTTGTCT-ATGTAAAA-CCATTGGAAGATGATTATGTGTT 678
Query 717 GTTAACGCAATTTGTAATGGAAAATAATTAAGTTCTGGGATTAGTAA 763
||| || |||||||||| |||||||| ||| |||| ||||||||||
Sbjct 679 -TTA-CGGAATTTGTAATCGAAAATAACTAATTTCTTGGATTAGTAA 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29164031505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5