BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27680.1
Length=3259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489560 jgi|Araly1|489560|fgenesh2_kg.6__2694__AT5G27680.1 4854 0.0
> Ahg489560 jgi|Araly1|489560|fgenesh2_kg.6__2694__AT5G27680.1
Length=3216
Score = 4854 bits (2628), Expect = 0.0
Identities = 3037/3233 (94%), Gaps = 33/3233 (1%)
Strand=Plus/Plus
Query 25 TTTCCCAGAAAAATTGTCGTTCTAGGT-TACTCATTAACTTCAAAAGGTCTGTGTTTTTG 83
||||||||||||||||||||| | ||| | || |||||||||||||||||||||||||||
Sbjct 1 TTTCCCAGAAAAATTGTCGTTTTTGGTCT-CTGATTAACTTCAAAAGGTCTGTGTTTTTG 59
Query 84 GCGAGAAATTGGTGGTGGAGCGTTCGTCGCTAATTCAAA-Ta-aa-aaaaTCACTAGGGT 140
||||||||||||||||||||| ||| | ||||||||||| | || ||||||||||||||
Sbjct 60 GCGAGAAATTGGTGGTGGAGCATTCATAGCTAATTCAAACAAGAACAAAATCACTAGGGT 119
Query 141 TTGGAGTTCTGGAATTTGGGATTAACCAGTAGTTATGTACGAGTCATTACAGTTTCCTCC 200
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 120 TTGGAGTTCTGGAATTTGGGATTAACCAGTAGTTATATACGAGTCATTACAGTTTTCTCG 179
Query 201 TTTGTTTGGGTTTCATTAAGATCAATTAATGGTTTCTGGAACTTGCATTATGATTTACTA 260
||| ||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 180 TTTCTTTGGGTTTCATTCAGATCAATTAATGGTTTCTGGAACTTCCATAATGCTTTACTA 239
Query 261 GAATCAACTTGTTGTAGGATCCATATAAAGGACTGT-TTTTAGTCGCCTGAACAGTGTGA 319
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 240 GAATCAACTTGTTGTAGGATCCGTATAAAGGACTGTCTTTTAGTTGCCTGAACAGTGTGA 299
Query 320 ATTCGATGGATTTGTCTTCTGATCAACTCGTGATGAAGATTGTTGAAATGGGTTTTGAAA 379
||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||
Sbjct 300 ATTCGATGGATTTGTCTTCTGATCATGTTGTTATGAAGCTTGTTGAAATGGGTTTTGAAA 359
Query 380 AGTTGGATGCTTTGGAGGCTGTAAAAGCTGTAGGTGGTAAGTCATGTGATGATGCTGTTG 439
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 360 AGTTGGATGCTTTGGATGCTGTGAAAGCTGTAGGTGGTAAGTCATGTGATGATGCTGTGG 419
Query 440 AGTATATTTTGAAGGGAAATCATAGAACTGGTGGGTTCAAGCCGGCTAGTTTGCTATGTT 499
||||||||||||||||| || ||||||||||||| || ||||||||||| ||||||
Sbjct 420 AGTATATTTTGAAGGGACATGATAGAACTGGTGGATTTGCGCCGGCTAGTTCATTATGTT 479
Query 500 CT-TCAGGGAGTAATAAGATTCTTGGTAAAAGAGCTATGCCATCTTCGTTTTCTTCTTCG 558
|| | |||||||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 480 CTAT-AGGGAGTATTAAGATTCTTGGTAAAAGAGCTATGCCATCTTCG--TT-TTCTTCG 535
Query 559 GAG-TCAAAGCGTCAGTCTAGTTTGCTTGACCATTTTAGATCTGTGAACCAGAACAAGAA 617
| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 536 G-GTTCAAAGCGTCAGTCTAGTTTGCTTGACCATTTTAGATCTGTGGACCAGAACAAGAA 594
Query 618 AAAAGGCGACACCTTTGGGACTGTAGAAGTGGACTCTCAGTTAGAAACGGTGTCTGA-GC 676
||||||| |||||||||||| || ||||||| | ||||||||||||||||||||| | |
Sbjct 595 AAAAGGCAACACCTTTGGGATTGCAGAAGTGAATTCTCAGTTAGAAACGGTGTCTTATAC 654
Query 677 ATTCAGAAGAGGTGAGAAAGTCT-TTAGCTCCAGTGTTTATGGAGTCTAGTTGTTTTCCT 735
|| | ||||| || ||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 655 TTTTA-AAGAGCAGATAAAGTCTCTT-GCTCCAGTGTTTTTGGAGTCTAGTTGTTTTCCT 712
Query 736 GAAGGACAATTGTTGAATGGTTGCTCAGAGGCTTCATCATCGTGGGAGAAAAGAGTTAAT 795
||| | |||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 713 GAAACAGAATTGTCAAATGGTTGCTCTGAGGCTTCATCAACGTGGGAGAAAAGAGTTAAC 772
Query 796 TCTATACTACGAAACCGGTTTGGTATTTCATCCCTGAGAAGTTTCCAAAGAGAGGCTTTG 855
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCTATACTACAAAACCGTTTTGGTATTTCATCCCTGAGAAGTTTCCAAAGAGAGGCTTTG 832
Query 856 TCAACATGGGTTGCGCACAAGGACTGTCTTGTTCTAGCTGCAACGGGATCTGGGAAATCT 915
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCAACATGGGTTGCTCATAAGGACTGTCTTGTTCTAGCTGCAACGGGATCTGGGAAATCT 892
Query 916 CTTTGCTTCCAGATTCCTGCATTATTAACGGGAAAAGTTGTTGTCGTAATTTCGCCTTTG 975
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 893 CTTTGCTTCCAGATTCCTGCATTATTAACCGGAAAAGTTGTTGTTGTAATTTCACCTTTG 952
Query 976 ATAAGCTTGATGCATGATCAATGCCTCAAGCTATCAAGGCACAAAGTCTCTGCTTGTTTT 1035
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 953 ATAAGCCTGATGCATGATCAATGCCTCAAGCTATCAAGGCACAGAGTCTCTGCTTGTTTT 1012
Query 1036 CTTGGTTCAGGCCAACTTGATAATTGCATAGAAGAGAAGGCAATGCAGGGAATGTATCAG 1095
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 1013 CTTGGTTCAGGCCAACTTGATACTTGCATAGAAGAAAAAGCAATGCAGGGAATGTATCAG 1072
Query 1096 ATCATATATGTTTGCCCTGAGACAGTGGTCCGACTGATTAAACCACTCCAGAAGCTTGCA 1155
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1073 ATTATATATGTTTGCCCTGAGACAGTGGTTCGACTGATTAAACCACTCCAGAAGCTTGCA 1132
Query 1156 AAGACTCATGGAATTGCTCTTTTTGCAATTGATGAAGCGCATTGCGTATCAAAGTGGGGA 1215
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1133 AAGACTCATGGAATTGCTCTTTTTGCAATTGATGAAGCGCATTGTGTATCAAAGTGGGGA 1192
Query 1216 CATGATTTCCGTCCGCACTACAGGAAATTATCGGTGTTGCGGGAAAATTTCTGTGCCAGC 1275
|||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1193 CATGATTTTCGTCCGCACTACAGGAGATTATCTGTGTTGCGGGAAAACTTCTGTGCCAGC 1252
Query 1276 AATTTGGAATTCTTAGAATATGATGTACCGATAATGGCATTGACTGCAACAGCCACTGTT 1335
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1253 AATTTGGAATTCTTGGAATATGATGTACCGATAATGGCATTGACTGCTACAGCCACAGTT 1312
Query 1336 AACGTTCAGGAAGATATTCTTGAGTCACTTCACCTGTCAAAGGAAACAAAAATTGTACTT 1395
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1313 CACGTACAGGAAGATATTCTTGAGTCACTTCACCTGTCAAAGGAAACAAAAACTGTGCTT 1372
Query 1396 ACTTCATTTTTCAGGCCAAATCTACAATTTTCTGTTAAACATAGTCGAACCAAGTTTGCA 1455
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1373 ACTTCATTTTTCAGGCCAAATCTACAATTTTCAGTTAAACATAGTCGAACCAAGTTTGCA 1432
Query 1456 TCTTCATATGCAAAGGACTTCCAAAACTTAGTTGACTTATACTCTGAAAAGAAAAACTCT 1515
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1433 TCTTCATATGCAAAGGACTTCCAAAACTTAATTGACTTATACTCTGAAAAGAAAAAGTCT 1492
Query 1516 ACCGGGAAAAAGCTAGCAGTAATCTCACGAGAGTCAGAGGAGCAGACTGATTTTGGTTCT 1575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1493 ACCGGGAAAAAGCTAGCAGTAATCTCACGAGAGTCAGAGGAGCAGACTGATTTTGGTTAT 1552
Query 1576 CACGATTCTGAAAACATCCATGAGACGGATTATGATGAGGATGAAGAGGATCAAGAAAAC 1635
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1553 CACGATGCTCAAAACATCCATGAGACAGATTATGATGAGGATGAAGAGGATCAAGAAAAC 1612
Query 1636 TCCCTGGCAAAGAAAAACAGTTCAAATGGGAAAGAATTGTCAGAAGCGTATCTGGAAGAT 1695
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1613 TCTCTGGCAAAGAAAAACAGTTCAAATGGGAAAGAATTGTCAGAAGAGTATCTGGAAGAT 1672
Query 1696 GAAACTGACATTTTCCAGAGTGTTGATGATTGGGATGTGGCTTGTGGCGAGTTTTGCGCA 1755
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GAAACCGACATTTTCCAGAGTGTTGATGATTGGGATGTGGCTTGTGGCGAGTTTTGCGCA 1732
Query 1756 ATGCCTTCTTGTGAACTCCTGGAAATACCTGTCCCTTCTGAAAAGCAAAAGGATTTAGAA 1815
|||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 1733 ATGCCTCCTTGTGAACTCCTGGATATACCTATCCCTTCTGAAAAGCAAAAGGATTTGGAA 1792
Query 1816 GGACTGACAATCATATACGTTCCTACAAGAAAGGAGAGTGTCAACATTGCTAAGTATCTT 1875
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1793 GGACTGACAATCATATACGTTCCTACAAGAAAGGAGAGTGTCAACATTGCTAAATATCTT 1852
Query 1876 TGTGGGGTTGGACTGAAAGCTGCAGCTTATAATGCATCGTTGCCaaaaaaaCATCTCAGA 1935
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1853 TGTGGGGTTGGACTGAAGGCTGCAGCTTATAATGCATCGTTGCCAAAAAAACATCTTAGA 1912
Query 1936 CAAGTGCACCAGGACTTT-CACGATAATAAGCTGCAGGTTGTTGTTGCCACAATTGCGTT 1994
||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1913 CAAGTTCACCAGGA-TTTCCACGAAAATAAGCTGCAGGTTGTTGTTGCCACAATTGCGTT 1971
Query 1995 TGGAATGGGAATTGACAAGAAAAATGTTCGGAAAATCATACATTATGGTTGGCTGCAGAG 2054
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1972 TGGAATGGGAATTGACAAGAAAAATGTTCGGAAAATCATCCATTATGGTTGGCCGCAGAG 2031
Query 2055 CTTGGAAGCATACTACCAAGAAGCTGGTCGAGCTGGAAGAGATGGCGAATTGGCTGAGTG 2114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 CTTGGAAGCATACTACCAAGAAGCTGGTCGAGCTGGAAGAGATGGCGAATTGGCTGAGTG 2091
Query 2115 TGTGCTCTATGCTGATCTATCGAGAGCACCAACGCTTTTGCCAAGCCGTAGGAGCAAAGA 2174
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2092 TGTGCTCTATGCTGATCTATCGAGAGCACCAACACTTTTGCCAAGCCGTAGGAGCAAAGA 2151
Query 2175 ACAGACAGAGCAAGCATACAAGATGCTATCTGACTGTTTCAGATATGGAATGAACACTTC 2234
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 2152 ACAGACAGAGCAAGCATATAAGATGCTATCTGATTGTTTTAGATATGGAATGAAGACTTC 2211
Query 2235 ACAATGTCGGGCCAAAATACTTGTGGAGTACTTTGGGGAGGAATTTAGTTCCAAAAAGTG 2294
||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 2212 ACAATGTCGAGCGAAAATACTCGTGGAGTACTTTGGGGAGGATTTTAGTTCCAAGAAGTG 2271
Query 2295 TAACTCATGTGATGTTTGCACTGAAGGGCCTCCGGAGCTAGTAGATGTACGAGAGGAAGC 2354
||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 2272 TAACTTATGTGATGTTTGCAAGGAAGGGCCCCCGGAGCTAGTAAATGTACGAGAGGAAGC 2331
Query 2355 TAATCTTTTGTTTCAAGTAATCACTGCTTTTCATTTGCAGGTAGACAATGACTCTGAGCA 2414
||||||||||||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 2332 TAATCTTTTGTTTCAAGTAATCAATGCTTTTCAT--G----TAGACAATGACTCTGAGCA 2385
Query 2415 TGCACCATATGAAGATTATGGACTCGGCAACAGCAAACAAAATAAATTATCCCACAAGCC 2474
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2386 TGCACCATATGAAGATTATGGACTCGGCAACAGCAAACAAAAGAAATTATCCCACAAGCC 2445
Query 2475 AAATCTTCTGTTCTTCATCAGTAAACTCAGGGAACAGTGTGAAAAATTCAAGGAAACAGA 2534
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2446 AAATCTTCTGTTCTTCATCAGTAAAATCAGGGAACAGTGTCAAAAATTCAAGGAAACAGA 2505
Query 2535 TTGTCTTTGGTGGAAAGGTCTTGCCCGTATCATGGAAGCCGAAGGA-TACATCAAAGAGA 2593
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2506 TTGTCTTTGGTGGAAAGGTCTTGCCCGTATCATGGAAGCC-AAGGAATACATCAAAGAGC 2564
Query 2594 TGGATAACAAGGATCGTCGAGTTGAGATTAAATTCATACAACCAACAGAAAAAGGGAAGA 2653
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2565 TGGATAACAAGGATCGTCGAGTTGAGATTAAATTTATACAACCAACAGAAAAAGGGAAGA 2624
Query 2654 AACAACTAGATTTCCAAGATGACAAACCACTCTATGTTTATCCAGAAGCCGACATGCTAC 2713
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2625 AGCAACTAGATTTCGAAGATGACAAACCACTCTATGTTTATCCAGAAGCCGACATGCTAC 2684
Query 2714 TTTCGTTGAAACAAGATAGAACATACAGTGGATTCTCTGAATGGGGAAAAGGATGGGCAG 2773
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2685 TTTCGTTGAAACAAGACAGAACATACAGCGGATTCTCTGAATGGGGAAAAGGATGGGCAG 2744
Query 2774 ATCCAGAGATCCGGCGCCAGCGGTTagagagaagagaaagaaagcctcgaagagaaagga 2833
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2745 ATCCAGAGATCCGGCGCCAGCGGTTAGAGAGAAGAGAAAGGAAGCCCCGAAGAGAAAGGA 2804
Query 2834 aaccccgaaaaaaaCGAACACGAGGACGTTCTTCGACGAAGTTACATCCATGGAGAAGCA 2893
||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 2805 AACCCCGAAAAAAGCGAACACGAGGACCTTCTTCGAAGAAGTTGCATCCATGGAGAAGCA 2864
Query 2894 AAGAATAAGAATCTCAACCCTCTT---TAAGCTCCTTCTTTGCTCTGAGTCCCATCTTGA 2950
|||||||| ||||||||||||||| ||||||||||||||||| | | |||||| ||||
Sbjct 2865 AAGAATAATAATCTCAACCCTCTTAAGTAAGCTCCTTCTTTGCTTTCAATCCCATATTGA 2924
Query 2951 GGCATAGATACCGCGCCATCGAGAAGCTGAGGCTTGTAAACGAGGCTTTGGTAACGGCGG 3010
|||| ||| | ||||||||||||||| | | || ||||| ||||| ||||| | ||||
Sbjct 2925 GGCAGAGACATCGCGCCATCGAGAAGTTAAAACTCGTAAATGAGGCCTTGGTCGCTGCGG 2984
Query 3011 AAGAGAACGTAACAAGGCTTCAAGAACGTCATGATGTGATTCTCAAAGAGATATGTTCTT 3070
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2985 AAGAGAATGTAGCAAGGCTTCAAGAACGTCATGATGTGATCCTCAAAGAGATATGTTCTT 3044
Query 3071 ATTATCTCGTTAACACCGAGCTCCATGAAGCTTTGGTTTCATCTCGTGCAGCCATTAATG 3130
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3045 ATTATCTCGTTAACACCGAGCTCCATGAAGCTTTGGTTTCAGCTCGTGCAGCCATTAATG 3104
Query 3131 ATGCTTCTTCATTTGTCATGGAGCTTAGAAGATTACAGTTGAATATCTTAAACTCTCTTT 3190
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 3105 ATGCTTCTTCATTTGTCATGGAGCTTAGAAGACTACAGTTGAATATCTTAAACTCTTTTT 3164
Query 3191 CTTAATCACA-TTTTTTG-TACTTATTACACTAATTAAAACCAGAGTTTGGGT 3241
|||||||| | ||||||| | |||||||| |||||||||| |||||||||||
Sbjct 3165 CTTAATCA-AGTTTTTTGGTGCTTATTACGCTAATTAAAATTAGAGTTTGGGT 3216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123002075936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5