BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27690.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489559 jgi|Araly1|489559|fgenesh2_kg.6__2693__AT5G27690.1 1535 0.0
> Ahg489559 jgi|Araly1|489559|fgenesh2_kg.6__2693__AT5G27690.1
Length=1103
Score = 1535 bits (831), Expect = 0.0
Identities = 1013/1096 (92%), Gaps = 31/1096 (3%)
Strand=Plus/Plus
Query 1 CCCTCTTCTTCATCTTCCTCTTTCTCTCCATTATGGATTTAGGAACAGAGATAAAATCAG 60
|||||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 CCCTCTGCTTCGTCTTCCTCTTTCTCTCCAATATGGATTTAGGAACAGAGATCAAATCAG 60
Query 61 ACACAAGACAAGAAGAACAGAGACATGTTTTCGAAGATTACCCTGAACCTCTTAGATACA 120
|||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 61 ACACCAGACAAGAAGAACAGAGACATGTTTTTGAAGATTACCATGAACCTCTTAGATACA 120
Query 121 CCACATGGGTTTTGCGAGTTTCTATCCATTGTGAAGGATGCAAGAGAAAAATCAAGAAAA 180
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CCACATGGGTTTTAAGAGTTTCTATCCATTGCGAAGGATGCAAGAGAAAAATCAAGAAAA 180
Query 181 TATTGAGCAAAATCGATGGTGTATATACAACAAATATCGACGTGAAGCAACAAAAAGTAA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TATTGAGCAAAATCGATGGTGTATATACAACAAATATCGACGTAAAGCAACAAAAAGTAA 240
Query 241 CGGTGATCGGAAACGTAGAGCCGGAGATTTTAATCAAGAAGATCATGAAAGCCGGTAGAC 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGTGATTGGAAACGTAGAGCCGGAGATTTTAATCAAGAAGATCATGAAAGCCGGTAGAC 300
Query 301 ACGCCGAGCTATGGCCAACGTCAATGGAGAACAACATTAACAACGATTGTAACTATCAGA 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 ACGCCGAGCTATGGCCAACGTCAATGGGGAACAACATTAACAACGATTGTAACTATCAGA 360
Query 361 AGAAACCAAAGAAAGATAACGAAGAAACTAGTGGAGATGAAGACGACGACGAAaacaaca 420
||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||
Sbjct 361 GGAAACCAAAGAAAGATAACGAAGAAACCAGTGGAGATGAAGACGACGATG--AA-AACA 417
Query 421 acaacaacaacGGCGGAGGTGACGTCGGTGGTGGAGGTGGTGGTGGAGGAGGAAACTT-T 479
|||||||||||||||||||||||| |||||||||| ||| ||||| || |
Sbjct 418 ACAACAACAACGGCGGAGGTGACGGCGGTGGTGGA------GGT---GGAGG----TTGT 464
Query 480 GATCAGGTTAAACAAGTTGTTACGTTTGTAAACGGTCAACTTCAACCACAAGGAGATGGA 539
|||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct 465 GATCAGGTGAAACAAGTTGTGACGTTCGTTAACGGTCAACTTCAACCTCAAGGAGATGGA 524
Query 540 GCTCCgaagaagaagaagaaaaagaaaaagaagaagaaaagCTTAGGGAACACGACGGTG 599
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GCTCCTAAGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAAGCTTAGGGAACACGACGGTA 584
Query 600 GTAATGGAAGGAGGCGGCGGCGGCGGTGGCGGTGGT-G-G-TCCTCCGCAAAACGATGGA 656
|| |||||||||||||| || || ||||| |||||| | | ||| |||||||||||||||
Sbjct 585 GTGATGGAAGGAGGCGGTGGTGGTGGTGGTGGTGGTGGTGCTCCGCCGCAAAACGATGGA 644
Query 657 CCGCCAGAGACAGTGATATACTCAGCTCCACAAGATCATCACATTATACACGGACCACCT 716
|| |||||||||||||||||||||||||||| |||||||||||| || ||||| ||||
Sbjct 645 CCACCAGAGACAGTGATATACTCAGCTCCACCAGATCATCACATAATTCACGG---ACCT 701
Query 717 CCTCATCTACATCATCATCAGCAGCAGAATCATCCGTATCCAACGGTTCACAGTCCTCCA 776
| || | ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 702 CAACA--T-CATCATCATCATCAGCAGAATCATCCGTATCCAATGGTTCACAGTCCTCCA 758
Query 777 CGTCATCATCCACAACAAATGTACGGGCCGGGTCCGGGACTGCCTCCTCCTTCGTTTTAT 836
|||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||
Sbjct 759 CGTCATCATCCACAACAAATGTACGGTCCGAGTCCGGGACCGCCGCCTCCTTCGTTTTAT 818
Query 837 CATACTCAGCCTCAAACGGCGCCGTCTTATACGGTGAGTTACAACACGGTGCATGGGCCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CATACTCAGCCTCAAACGGCGCCGTCTTATACGGTGAGTTACAACACGGTGCATGGGCCA 878
Query 897 ATTAATAACGGTGGGAATGAGACGGCGTCGTATTACACGGCTCCTCCTTCTCATCCGACG 956
| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 879 AGTAA---CGGTGGGAATGAGACGGCGTCGTATTACACAGCTCCTCCTTCTCATCCGACG 935
Query 957 TCATATTATTCTTATGAGTACGTGGACACTGGCTACGAATCTCCACCGCCCGAATTTTAT 1016
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 936 TCGTATTATTCTTATGAGTACGTGGATACTGGCTACGAATCTCCACCGCCCGAATTTTAT 995
Query 1017 TCGTATAGATCTCAACCGTCGGAATCGTTTGA-GTCACTAAGCGAAGGCAATCCAAACTC 1075
|||||||||||||| ||||| || |||||||| | |||| ||||||||||||||||||||
Sbjct 996 TCGTATAGATCTCAGCCGTCAGATTCGTTTGAAG-CACTTAGCGAAGGCAATCCAAACTC 1054
Query 1076 TTGTTGCGTTATGTGA 1091
||||| ||| ||||||
Sbjct 1055 TTGTTACGTCATGTGA 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5