BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27700.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value Ahg942326 jgi|Araly1|942326|scaffold_602870.1 425 1e-118 Ahg896656 jgi|Araly1|896656|Al_scaffold_0005_622 198 3e-50 Ahg894670 jgi|Araly1|894670|Al_scaffold_0006_2666 65.8 4e-10 > Ahg942326 jgi|Araly1|942326|scaffold_602870.1 Length=290 Score = 425 bits (230), Expect = 1e-118 Identities = 272/292 (93%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 93 TTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGGTCAGGTCACTGAGCTTTACATTC 152 ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2 TTCAAAGCTAATC-TTCAAGATGCAAAACGAAGAGGGTCAGACCACTGAGCTTTACATTC 60 Query 153 CTAGGAAATGTTCTGCTACTAACCGGTTGATCACATCCAAGGATCATGCCTCTGTTCAGC 212 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CTAGGAAATGCTCTGCTACTAACCGGTTGATCACTTCCAAGGATCATGCCTCTGTTCAGC 120 Query 213 TCAACATTGGTCATTTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTC 272 ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 121 TCAACATTGGTCATTTAGATGCTAATGGCGTGTACACCGGACAATTCACCACCTTTGCTC 180 Query 273 TCTGCGGTTTTGTCCGTGCTCAGGGAGACGCTGACAGTGGTGTCGACAGGTTGTGGCAGA 332 |||| ||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| Sbjct 181 TCTGTGGTTTCGTCCGTGCCCAGGGAGACGCAGACAGTGGTGTCGACAGGCTGTGGCAGA 240 Query 333 AGAAGAAGGTTGAAGCCAAACAAAACTAAGAGCTTAATCTGTCTTGTTTTTT 384 |||||||||| |||||||| |||||||||||| |||| ||||| ||||||| Sbjct 241 AGAAGAAGGTCGAAGCCAAGCAAAACTAAGAGTTTAAGCTGTC--GTTTTTT 290 > Ahg896656 jgi|Araly1|896656|Al_scaffold_0005_622 Length=207 Score = 198 bits (107), Expect = 3e-50 Identities = 166/195 (85%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 162 GTTCTGCTACTAACCGGTTGATCACATCCAAGGATCATGCCTCTGTTCAGCTCAACATTG 221 |||| |||||||| ||||||| ||||| ||||| ||||| || || ||||||||||||| Sbjct 8 GTTCGGCTACTAATAGGTTGATTACATCAAAGGACCATGCTTCAGTGCAGCTCAACATTG 67 Query 222 GTCAT-TTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTCTCTGCGGT 280 ||||| || | |||| |||| | ||||| || || ||||| |||||||||||||||||| Sbjct 68 GTCATCTT-GGTGCTGATGGAATCTACACTGGTCAATTCACTACCTTTGCTCTCTGCGGT 126 Query 281 TTTGTCCGTGCTCAGGGAGACGCTGACAGTGGTGTCGACAGGTTGTGGCAGAAGAAGAAG 340 ||||||||||||||||| || |||||||| ||||||| ||| | |||||||| |||||| Sbjct 127 TTTGTCCGTGCTCAGGGTGATGCTGACAGCAGTGTCGATAGGCTATGGCAGAACAAGAAG 186 Query 341 GTTGAAGCCAAACAA 355 |||||||| |||||| Sbjct 187 GTTGAAGCTAAACAA 201 > Ahg894670 jgi|Araly1|894670|Al_scaffold_0006_2666 Length=402 Score = 65.8 bits (35), Expect = 4e-10 Identities = 40/42 (95%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 30 CTCCGGTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTC 71 |||| |||||||||||||||||||||||||||||| |||||| Sbjct 77 CTCCCGTTGCCGCACCTGCTTCGCTTCTCCTCTCT-GCTCTC 37 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21977619264 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5