BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G27700.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942326 jgi|Araly1|942326|scaffold_602870.1                        425    1e-118
  Ahg896656 jgi|Araly1|896656|Al_scaffold_0005_622                     198    3e-50 
  Ahg894670 jgi|Araly1|894670|Al_scaffold_0006_2666                   65.8    4e-10 


> Ahg942326 jgi|Araly1|942326|scaffold_602870.1
Length=290

 Score =  425 bits (230),  Expect = 1e-118
 Identities = 272/292 (93%), Gaps = 3/292 (1%)
 Strand=Plus/Plus

Query  93   TTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGGTCAGGTCACTGAGCTTTACATTC  152
            ||||||||||| | |||||||||||||||||||||||||||  |||||||||||||||||
Sbjct  2    TTCAAAGCTAATC-TTCAAGATGCAAAACGAAGAGGGTCAGACCACTGAGCTTTACATTC  60

Query  153  CTAGGAAATGTTCTGCTACTAACCGGTTGATCACATCCAAGGATCATGCCTCTGTTCAGC  212
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  61   CTAGGAAATGCTCTGCTACTAACCGGTTGATCACTTCCAAGGATCATGCCTCTGTTCAGC  120

Query  213  TCAACATTGGTCATTTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTC  272
            ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct  121  TCAACATTGGTCATTTAGATGCTAATGGCGTGTACACCGGACAATTCACCACCTTTGCTC  180

Query  273  TCTGCGGTTTTGTCCGTGCTCAGGGAGACGCTGACAGTGGTGTCGACAGGTTGTGGCAGA  332
            |||| ||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct  181  TCTGTGGTTTCGTCCGTGCCCAGGGAGACGCAGACAGTGGTGTCGACAGGCTGTGGCAGA  240

Query  333  AGAAGAAGGTTGAAGCCAAACAAAACTAAGAGCTTAATCTGTCTTGTTTTTT  384
            |||||||||| |||||||| |||||||||||| |||| |||||  |||||||
Sbjct  241  AGAAGAAGGTCGAAGCCAAGCAAAACTAAGAGTTTAAGCTGTC--GTTTTTT  290


> Ahg896656 jgi|Araly1|896656|Al_scaffold_0005_622
Length=207

 Score =  198 bits (107),  Expect = 3e-50
 Identities = 166/195 (85%), Gaps = 2/195 (1%)
 Strand=Plus/Plus

Query  162  GTTCTGCTACTAACCGGTTGATCACATCCAAGGATCATGCCTCTGTTCAGCTCAACATTG  221
            |||| ||||||||  ||||||| ||||| ||||| ||||| || || |||||||||||||
Sbjct  8    GTTCGGCTACTAATAGGTTGATTACATCAAAGGACCATGCTTCAGTGCAGCTCAACATTG  67

Query  222  GTCAT-TTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTCTCTGCGGT  280
            ||||| || | |||| ||||  | ||||| || || ||||| ||||||||||||||||||
Sbjct  68   GTCATCTT-GGTGCTGATGGAATCTACACTGGTCAATTCACTACCTTTGCTCTCTGCGGT  126

Query  281  TTTGTCCGTGCTCAGGGAGACGCTGACAGTGGTGTCGACAGGTTGTGGCAGAAGAAGAAG  340
            ||||||||||||||||| || ||||||||  ||||||| ||| | |||||||| ||||||
Sbjct  127  TTTGTCCGTGCTCAGGGTGATGCTGACAGCAGTGTCGATAGGCTATGGCAGAACAAGAAG  186

Query  341  GTTGAAGCCAAACAA  355
            |||||||| ||||||
Sbjct  187  GTTGAAGCTAAACAA  201


> Ahg894670 jgi|Araly1|894670|Al_scaffold_0006_2666
Length=402

 Score = 65.8 bits (35),  Expect = 4e-10
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand=Plus/Minus

Query  30  CTCCGGTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTC  71
           |||| |||||||||||||||||||||||||||||| ||||||
Sbjct  77  CTCCCGTTGCCGCACCTGCTTCGCTTCTCCTCTCT-GCTCTC  37



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5