BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27710.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489558 jgi|Araly1|489558|fgenesh2_kg.6__2692__AT5G27710.1 1823 0.0
> Ahg489558 jgi|Araly1|489558|fgenesh2_kg.6__2692__AT5G27710.1
Length=1439
Score = 1823 bits (987), Expect = 0.0
Identities = 1302/1446 (90%), Gaps = 54/1446 (4%)
Strand=Plus/Plus
Query 1 CTCTACAGTCTCTCTTCTCCATTCTCCAAT-T-T----C---TACAAAGATAATGTGGAT 51
|||||| |||||||||| |||||||||||| | | | |||||||||||||||||
Sbjct 1 CTCTACTGTCTCTCTTCACCATTCTCCAATCTCTCCCACAAGAACAAAGATAATGTGGAT 60
Query 52 TCACCAAAAATTCAGAGGAAGGACACGACAATGGTGAATTCGTACGTTCCTCTTCGTTTC 111
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCACCAAAACTTCAGAGGAAGGACACGACAATGGTGAATTCATACGTTCCTCTTCGTTTC 120
Query 112 ACCATTTTCATCTCCTTCTCCATCGCAGCAGCTTCATCCTTCAAACTCCACTCCGCTTCT 171
||||||||||||||||||||||||||||||||||| | |||||||| | | | | |||
Sbjct 121 ACCATTTTCATCTCCTTCTCCATCGCAGCAGCTTC-T--TTCAAACT-CGC-CAG-TTCC 174
Query 172 CATTCTCCGTCGTCATTTCCGAAAGCCACCGGCGACGATCTACTCTCCGTTCTCGGACC- 230
|| |||||||| || ||||| |||||||||| || |||||| ||||| |||||||||||
Sbjct 175 CAATCTCCGTCATCGTTTCCAAAAGCCACCGCCGGCGATCTTCTCTCTGTTCTCGGACCA 234
Query 231 TCCCTCCGCCGCGTCGTGCCTCAACCCAATCGTCTCTCGAGAGATCAAATCGTGTCTTAA 290
| ||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 235 T-CCTCCACCGCGTCTTGCCTCAACCCAATCGTCTCTCGAGAAATCAAATCTTGTCTCAA 293
Query 291 ATTCCTCGTCCCATTCAAATCGGATAAACCTAAACCCGAATTTGGACGATGCTCGCCTCG 350
|||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||| |||
Sbjct 294 ATTCCTCGTCCCTTTCAAATCGGATAAATCTAAACCCGAATTGGGACGATGTTCGCTTCG 353
Query 351 TACTGGACTCTGTTCCGGAAAAATTGACGCCGTTGAG-AGACGGAGCAAGTTTGAAGAGG 409
|||||||||||||| || |||||||||||||||||| || | ||| |||||||||||||
Sbjct 354 CACTGGACTCTGTTCAGGTAAAATTGACGCCGTTGAGAAG-CTGAGTAAGTTTGAAGAGG 412
Query 410 AGAATTCTCTAATCTGGTGGCCACCGGAATCGGTTCTAGAGCTTGCTCGTCTCGCTGTTG 469
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 413 AGAATTCTCTAATCTGGTGGCCACCGGAGTCGGTTCTAGAGCTAGCTCGTCTCGCTGTTG 472
Query 470 ACTCCGGTGGTGATCCCGGTTCAATTCAGCGAACTCTCAATCCGAAAATGATCCCGGTTC 529
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 473 ACTCCGGTGGTGATCCCGGTTCAATTCAGCGAACTCTCAATCCCAAAATGATTCCGGTTC 532
Query 530 CTGATGTTGAACGATCAAGAAAAGATAAATGTCAACTTACTAGAACTCCTTATGGTCGTC 589
||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 533 CTGATGTTGAACGATCAAGAAAAAATAAATGTCAACTTACAAGAAGTCCTTATGGTCGTC 592
Query 590 ATTTTATAGCAGAGGAAGTGAACTCATATTTCGAGTTCTTGTTTCATCTAATTGAATCTA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATTTTATAGCAGAGGAAGTGAACTCATATTTCGAGTTCTTGTTTCATCTAATTGAATCTA 652
Query 650 GGGGACCTAGTGTTGGATTGAATGTTTCATTGAGTAGATATGATTTGTTCCATGGCCATT 709
||||||| |||||||||||||||||||| |||| | ||||||||||||| ||||| ||||
Sbjct 653 GGGGACCAAGTGTTGGATTGAATGTTTCGTTGACTCGATATGATTTGTTTCATGGTCATT 712
Query 710 TATTCCTTGCCTCAGAATCTGGACGCCTTGGAATATTGTTTCATGCTAAAGAGTATCCAG 769
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 713 TATTTCTTGCCTCAGAATCTGGACGCCTTGGAATATTGTTTCATGCTAAAGAGTACCCAG 772
Query 770 CCTATGACAAGAAAGTGTTTCCTTACAACATGGGATATTGCCAGAGAGGATCTGACGTGA 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 773 CCTATGACAAGAAAGTGTTTCCTTACAACATGGGATATTGCCAGAGAGGATCTGACATGA 832
Query 830 AATACAATGATTCAATGAACTTGAGGAATATCCTTTGGCTTGCACCATTACCTAGCAACT 889
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 833 GATACGATGATTCAATGAACTTGAGGAATATCCTTTGGCTTGCACCATTACCCAGCAACT 892
Query 890 CTTCTCCAGATTGGGTTGCTCCAGGTGTACTTGTGGTTCTTGATGCGCATCCGGATGGAA 949
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 893 CTTCTCCAGATTGGCTTGCTCCAGGTGTACTTGTGGTGCTTGATGCGCATCCGGATGGAA 952
Query 950 TCATATACCGAGATCTCATCCCTGACTATGTTAAGTTTGTAAGAACAATATACGAAGATG 1009
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCATATACCGAGATCTGATCCCTGACTATGTTAAGTTTGTAAGAACAATATACGAAGATG 1012
Query 1010 ATTTGGGAACAACCGCAGTTGATGTCAATTACTTGAATGTCGGAGCTCACGAACCTGACT 1069
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ATTTGGGAACAACTGCGGTTGATGTCAATTACTTGAATGTCGGAGCTCACGAACCTGACT 1072
Query 1070 ATCAGCTTTTCATGTGCTGAAACAAACCAGTTACAGATTCACAATTACA-CAGTTGTGTG 1128
||||||||||| ||||||||||| | ||||||||||| |||||| || ||||||| ||
Sbjct 1073 ATCAGCTTTTCGTGTGCTGAAAC---C-AGTTACAGATTTACAATT-CAACAGTTGTCTG 1127
Query 1129 TAATTGAAACTTTGATTAAGATTTAGTTACTGGAGCTGGTC-GAGGTTCAATAACGTTCG 1187
| ||||||||||||||||||| |||||| ||||| ||||| ||||||||| ||||||||
Sbjct 1128 -A-TTGAAACTTTGATTAAGATCTAGTTATTGGAGATGGTCAGAGGTTCAAGAACGTTCG 1185
Query 1188 AGTTGGTTGATAATTTAGAGAGGTCTGAAGTATTGTCGGTTACAAAATAGCTTTAACAAT 1247
|||| |||||||||||||| |||| || || | | ||| | ||| || | | |
Sbjct 1186 AGTTAGTTGATAATTTAGATAGGTA--AA-TA--G-CT-TTA-ACAAT--CTCTCAGG-T 1234
Query 1248 CACATTGCTGAGGCTTTAAGCTTAATTGTAAAAGTTTAGGATTAGATTTGACATATCACT 1307
| |||| | | | ||| ||| | | ||| |||||||||||||||||||||||||||
Sbjct 1235 -A-ATTG-T-A---TA-AAGTTTACTGG-AAACGTTTAGGATTAGATTTGACATATCACT 1285
Query 1308 TGGCTTTGTTTGATTCACACAGTTCGCCTTAGTGATGTAAATTAATTAATTTCGAGAGCA 1367
|| ||||| |||||||||||| | | |||||||||||||||||||||| |||||
Sbjct 1286 TGCCTTTG----ATTCACACAGTTTGTGGTGGTGATGTAAATTAATTAATTTCCAGAGCT 1341
Query 1368 TCAATAACATATTAATGATTAGTTATTTTCCACCAGGTAACCAT-TGCCAACGGCTACAA 1426
||||||||||||||| ||||||||||||| | |||| ||||||| | ||||||||| | |
Sbjct 1342 TCAATAACATATTAAGGATTAGTTATTTTTCTCCAGATAACCATCT-CCAACGGCTGCTA 1400
Query 1427 ATACAC 1432
||||||
Sbjct 1401 ATACAC 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5