BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G27720.1

Length=912
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326933 jgi|Araly1|326933|fgenesh1_pm.C_scaffold_6002153           592    2e-168


> Ahg326933 jgi|Araly1|326933|fgenesh1_pm.C_scaffold_6002153
Length=432

 Score =  592 bits (320),  Expect = 2e-168
 Identities = 352/368 (96%), Gaps = 0/368 (0%)
 Strand=Plus/Plus

Query  228  ATGCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATGCTCGTGGAGCTTAAG  287
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  1    ATGCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGTCATCCTATGCTCGTGGAGCTCAAG  60

Query  288  AATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTG  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  61   AATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATTCATCTT  120

Query  348  CGTGAAGTCATATGTACATCAAAGGACGGAGATAGATTTTGGAGGATGCCGGAATGTTAT  407
            ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  121  CGTGAAGTCATCTGTACATCAAAGGACGGAGATAGGTTTTGGAGAATGCCGGAATGTTAT  180

Query  408  ATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGGTGATTGATAAAGTACAG  467
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  181  ATCCGTGGTAACACAATCAAATACCTTCGAGTTCCAGATGAGGTGATTGATAAAGTACAG  240

Query  468  GAGGAGAAGACACGCACAGATAGAAAACCACCAGGTGTTGGACGTGGAAGAGGACGTGGT  527
            ||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  241  GAGGAGAAGAGTCGCACAGATAGAAAACCACCAGGGGTTGGACGGGGAAGAGGACGTGGT  300

Query  528  GTGGATGATGGAGGAGCCAGAGGCAGAGGCAGAGGAACTTCAATGGGGAAGATGGGTGGC  587
            |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct  301  GTGGATGATGGAGGGGCCAGAGGCAGAGGCCGAGGAACTTCAATGGGTAAGATGGGTGGC  360

Query  588  AACAGAGG  595
            ||||||||
Sbjct  361  AACAGAGG  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33815027379


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5