BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27730.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489556 jgi|Araly1|489556|fgenesh2_kg.6__2690__AT5G27730.1 2257 0.0
> Ahg489556 jgi|Araly1|489556|fgenesh2_kg.6__2690__AT5G27730.1
Length=1575
Score = 2257 bits (1222), Expect = 0.0
Identities = 1459/1570 (93%), Gaps = 29/1570 (2%)
Strand=Plus/Plus
Query 143 GAGGAGCCTCGCCGG--A-AACAGACCAAGACTTGCTTCTCTCGACATATTCCGCGGCCT 199
|||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 22 GAGGAGTCTCGCCGGAAACAACAGACCAAGACTTGCTTCTCTCGACATCTTCCGCGGCCT 81
Query 200 CACTGTCGCCTTGATGATTCTCGTTGATGACGCTGGAGGAGACTGGCCAATGATTGCTCA 259
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 82 CACTGTCGCCTTGATGATTCTCGTGGATGACGCCGGAGGAGACTGGCCAATGATTGCTCA 141
Query 260 TGCTCCGTGGAACGGTTGCAATTTGGCTGATTTCGTTATGCCTTTCTTTTTGTTCATCGT 319
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 142 CGCTCCATGGAACGGCTGCAATTTGGCTGATTTCGTCATGCCTTTCTTTTTGTTCATCGT 201
Query 320 TGGTGTCTCCATTGCTCTCTCCTTAAAGAGGATTTCGAATAAATTTGAAGCTTGTAAGAA 379
||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 202 TGGCGTCTCCATCGCTCTTTCCTTGAAGAGGATTTCGAATAAATTTGAAGCTTGTAAGAA 261
Query 380 GGTTG-GTTTTAGAACCTGCAAGCTCCTCTTCTGGGGTCTTCTACTTCAAGGTGGATTTT 438
|| || ||||||| ||||||||||| || ||||||||||||||||| || |||||||| |
Sbjct 262 GG-TGTGTTTTAGGACCTGCAAGCTTCTTTTCTGGGGTCTTCTACTGCAGGGTGGATTCT 320
Query 439 CTCATGCTCCTGACGAATTAA-CATACGGAGTTGATGTGACTATGATGAGGTTTTGTGGG 497
||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||
Sbjct 321 CTCATGCTCCTGACGAATTAAGC-TATGGTGTTGATGTGACTATGATGAGGTTTTGTGGG 379
Query 498 ATTCTTCAGAGAATAGCTTTATCCTATTTGGTAGTAGCATTGGTCGAGATCTTCACAAAG 557
||||||||||| || ||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 380 ATTCTTCAGAGGATTGCTTTATCCTACTTGGTAGTAGCATTGATCGAAATCTTCACAAAG 439
Query 558 GACTCACATGAGGAGAATCTGTCAACTGGGAGGTTTTCAATATTCAAGTCATATTATTGG 617
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 440 GACTTACATGAGGAGAATCTGTCAACTGGAAGGTTGTCAATATTCAAGTCATATTTTTGC 499
Query 618 CATTGGATTGTGGCCGCATCAGTTCTCGTGATTTATCTGGCTACACTCTATGGAACGTAC 677
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 500 CATTGGATTGTGGGTGTATCAGTTCTCGTGATTTATCTGGCTACACTCTATGGAACTTAC 559
Query 678 GTTCCTGACTGGGAATTTGTTGTCTATGATAAAGATAGCGTTCTGTACGGGAAAATCCTA 737
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 560 GTTCCTGACTGGGAATTTGTTGTCAATGATAAAGATAGCATTCTGTACGGGAAAATCCAA 619
Query 738 TCGGTATCATGTGGAGTGAGAGGAAAGCTGAACCCTCCTTGCAATGCTGTTGGATATGTT 797
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 620 TCTGTATCATGTGGAGTGAGAGGAAAGCTAAACCCTCCTTGCAATGCTGTTGGATATGTT 679
Query 798 GACAGACAAGTTTTAGGGATCAATCATATGTATCACCATCCTGCGTGGAGACGATCCAAG 857
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 680 GACAGAAAAGTTTTAGGGATCAATCATATGTATCACCATCCTGCGTGGAGACGAGCCAAG 739
Query 858 GCTTGCACCGATGATTCCCCCTATGAGGGAGCTATACGCCAAGATGCACCTTCATGGTGC 917
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 740 GCTTGCACCGATGATTCCCCCTATGAGGGAGCTTTACGCCAAGATGCACCGTCATGGTGC 799
Query 918 CGTGCTCCGTTTGAGCCTGAAGGAATCTTAAGCTCCATATCTGCTATTCTTTCTACAATC 977
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 800 CGTGCTCCGTTTGAGCCTGAAGGAATCTTAAGCTCCATATCTGCTATTCTCTCTACAATC 859
Query 978 ATCGGAGTCCATTTTGGACATATTATTTTACACTTGAAGGGACATTCAGCGCGGCTAAAA 1037
|||||||||||||||||||||||||| || |||||||||| |||||||| ||||| |||
Sbjct 860 ATCGGAGTCCATTTTGGACATATTATCATAGACTTGAAGGGGCATTCAGCTCGGCTGAAA 919
Query 1038 CATTGGATCTCCACCGGTCTTGTTCTCCTCGCTCTCGGACTTACTCTGCATTTCACCCAC 1097
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 920 CATTGGATCTCCACCGGTCTTGTTCTCCTCACTCTGGGACTTACTCTGCATTTCACACAC 979
Query 1098 TTGATGCCTCTGAACAAACAACTCTACAGTTTCAGCTACATATGCGTGACCTCCGGTGCA 1157
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 980 TTGATGCCTTTGAACAAACAACTCTACAGTTTCAGCTACATATGTGTGACCTCCGGTGCA 1039
Query 1158 GCAGCGCTCGTCTTCTCTTCGTTGTATTCTCTGGTCGATATATTGGAGTGGAAACACATG 1217
|| || |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1040 GCTGCACTCGTCTTCTCTTCATTGTATTCTCTGGTTGATGTATTGGAGTGGAAACACATG 1099
Query 1218 TTTCTGCCTCTAAAATGGATAGGCATGAACGCAATGTTGGTGTACGTGATGGGAGCTGAA 1277
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1100 TTTCTGCCTCTAAAATGGATAGGCATGAACGCAATGCTGGTCTACGTGATGGGAGCTGAA 1159
Query 1278 GGCATTTTGGCTGCTTTCTTCAATGGTTGGTACTATCGCCACCCGCACAATACACTGATA 1337
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1160 GGCATTTTGGCTGCTTTCTTCAATGGTTGGTACTATCGCCACCCACACAATACACTGATA 1219
Query 1338 AATTGGATTCGGGAGCATGTTTTTATCCGAGTTTGGCATTCAAGAAGAGTTGGTGTGCTA 1397
| |||||| || ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1220 ACTTGGATCCGAGAGCATGTTTTTATCAGAGTTTGGCATTCAAAAAGAGTTGGTGTGCTT 1279
Query 1398 ATGTATGTCATTTTCGCGGAGATTCTCTTCTGGGGTTTGGTCACTGGTGTGTTTCACAGA 1457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1280 ATGTATGTCATTTTCGCGGAGATTCTCTTCTGGGGTTTGGTCACTGGTGTGTTTCATAGA 1339
Query 1458 TTCAAGATCTATTGGAAACTCTAAGTAGACCGTGAAAATACCTAACTCTATGTTGAAGTT 1517
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1340 TTCAAGATCTATTGGAAACTCTAAGTAGACCGTGAAAATACCTA-CTCTATGTTGAAGTT 1398
Query 1518 GTTA-TAGTTTAG--G-ATATATAAAATCAAATTCATGGTAAGTAATGTAGTCAAATTCA 1573
|| | |||||| | | | | || ||||||||||||| ||||| ||||| |||||||||
Sbjct 1399 GT-ACTAGTTT-GTCGCA-AC-TACAATCAAATTCATGATAAGTTATGTAATCAAATTCA 1454
Query 1574 TGATAAGTTATGTATATT-TTTCGTAAACCTTG-GTCAGAATATCCTTTGTTGATGTTGA 1631
|||||||||||||||| | ||| ||||||||| |||||||| |||||||||||| |
Sbjct 1455 TGATAAGTTATGTATAATGTTTA-TAAACCTTGAGTCAGAAT--CCTTTGTTGATG---A 1508
Query 1632 TGATATAGGCCT-GTATATGCATTTCAGGCCAATTTCACCGATCTACC-GTATTGGAACT 1689
| ||| ||| | |||| ||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1509 T-ATA--GGCTTTGTATGTGCATTTCAGGCCGGTTTCACCGATCTACCCGGATTGGAACT 1565
Query 1690 TAAATATCCG 1699
||||||||||
Sbjct 1566 TAAATATCCG 1575
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 62 AATGGCGGAAATCAAAGTGGAGAGGAGTC 90
|||||||||||||||||||||||||||||
Sbjct 1 AATGGCGGAAATCAAAGTGGAGAGGAGTC 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5