BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27740.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351718 jgi|Araly1|351718|fgenesh1_pg.C_scaffold_6002311 1748 0.0
> Ahg351718 jgi|Araly1|351718|fgenesh1_pg.C_scaffold_6002311
Length=1080
Score = 1748 bits (946), Expect = 0.0
Identities = 1038/1080 (96%), Gaps = 15/1080 (1%)
Strand=Plus/Plus
Query 153 ATGTTGTGGGTCGACAAGTACAGGCCGAAATCACTCGACAAGGTCATAGTTCATGAAGAT 212
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTTGTGGGTCGACAAGTACAGGCCGAAATCACTCGACAAGGTCATCGTTCATGAAGAT 60
Query 213 ATCGCCCAAAAACTCAAGAAATTGGTTTCCGAGCAAGATTGTCCACATTTGCTCTTTTAT 272
||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| |||
Sbjct 61 ATCGCCCAAAATCTCAAGAAATTGGTTACCGAACAAGATTGTCCGCATTTGCTCTTCTAT 120
Query 273 GGGCCGTCAGGTTCTGGTAAGAAAACCCTAATTATGGCTCTTCTCAAGCAGATATATGGG 332
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GGGCCGTCAGGTTCTGGTAAGAAAACCCTAATCATGGCTCTTCTCAAGCAGATATATGGT 180
Query 333 GCCAGTGCAGAGAAGGTGAAAGTGGAGAACAGGGCATGGAAAGTTGATGCTGGGAGTAGA 392
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GCCAGTGCAGAGAAGGTGAAAGTGGAGAACAGGGCGTGGAAAGTTGATGCTGGGAGTAGA 240
Query 393 ACTATTGATCTGGAGCTCACTACATTATCAAGCACCAATCATGTGGAACTTACTCCAAGT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTATTGATCTGGAGCTCACTACATTATCAAGCACCAATCATGTGGAACTTACTCCAAGT 300
Query 453 GATGCAGGCTTTCAGGACAGATATATTGTTCAGGAGATAATTAAAGAAATGGCCAAGAAC 512
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GATGCAGGCTTTCAGGACCGATATATCGTTCAGGAGATAATTAAAGAAATGGCCAAGAAC 360
Query 513 AGACCAATTGACACGAAAGGAAAGAAGGGATATAAGGTGTTGGTATTAAATGAGGTTGAC 572
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 AGACCAATTGACACAAAAGGAAAGAAGGGATATAAGGTGCTGGTATTAAATGAGGTTGAC 420
Query 573 AAGCTCTCACGAGAAGCTCAACATTCTCTGCGGAGAACAATGGAGAAATACAGCTCATCT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGCTCTCACGAGAAGCTCAACATTCTCTGCGGAGAACAATGGAGAAATACAGCTCATCT 480
Query 633 TGCCGTCTCATCTTATGCTGCAACAGCTCTTCGAAGGTTACCGAAGCCATTAAGTCTCGT 692
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCCGTCTCATCTTATGCTGTAACAGCTCTTCGAAGGTTACCGAAGCCATTAAGTCTCGT 540
Query 693 TGTCTCAATGTGCGCATAAATGCACCTTCGCAGGAAGAGATAGTGAAAGTGTTGGAGTTC 752
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 TGTCTTAATGTGCGCATAAATGCACCTTCACAGGAAGAGATAGTGAAAGTGTTGGAGTTC 600
Query 753 GTTGCAAAGAAAGAAAGTCTGCAACTGCCCCAGGGTTTTGCTGCTCGTATTGCTGAAAAA 812
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GTTGCAAAGAAAGAAAGTCTGCAACTGCCCCAGGGTTTTGCTGCTCGAATTGCTGAAAAA 660
Query 813 TCAAATCGCAGTCTAAGAAGAGCTATTTTGTCACTTGAAACTTGTCGTGTCCAAAACTAT 872
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 TCAAATCGCAGTCTAAGACGAGCTATTTTGTCACTTGAGACTTGTCGTGTCCAAAACTAT 720
Query 873 CCGTTCACAGGTAACCAAGTGATATCTCCCATGGATTGGGAAGAGTATGTTGCTGAAATA 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCGTTCACAGGTAACCAAGTGATATCTCCCATGGATTGGGAAGAGTATGTTGCTGAAATA 780
Query 933 GCAACTGACATGATGAAAGAACAAAGCCCTAAAAAGTTATTTCAGGTGCGTGGAAAGGTG 992
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAACTGACATGATGAAGGAACAAAGCCCTAAAAAGTTATTTCAGGTGCGTGGAAAGGTG 840
Query 993 TACGAATTACTAGTTAATTGTATTCCACCAGAAGTCATTCTAAAG---A-G-------A- 1040
|||||||| |||||||| || |||||||||||||||||||||||| | | |
Sbjct 841 TACGAATTGCTAGTTAACTGCATTCCACCAGAAGTCATTCTAAAGTTTATGCTTTCCCAG 900
Query 1041 ---CTCCTTCATGAATTGCTGAAGAAACTGGACTCAGAGCTAAAGCTTGAAGTCTGCCAC 1097
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGACTTCTTCATGAATTGCTGAAGAAACTGGACTCAGAGCTAAAGCTTGAAGTCTGCCAC 960
Query 1098 TGGGCTGCATATTATGAACATCGGATGCGATTAGGTCAGAAAGCCATATTTCACATAGAA 1157
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 TGGGCTGCATATTATGAACATCGGATGCGACTAGGTCAGAAAGCCATATTTCACATAGAA 1020
Query 1158 GCATTTGTGGCCAAGTTTATGAGCATATACAAAAACTTCCTCATTTCAACGTTTGGGTAG 1217
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1021 GCATTTGTGGCCAAGTTTATGAGCATATATAAAAACTTCCTCATTTCAACATTTGGGTAG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5