BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G27760.1

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942310 jgi|Araly1|942310|scaffold_602854.1                        508    1e-143


> Ahg942310 jgi|Araly1|942310|scaffold_602854.1
Length=331

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 310/327 (95%), Gaps = 2/327 (1%)
 Strand=Plus/Plus

Query  38   CTCATCTTCTTCAACAATGGCGGAACCAAAGACAAAAGTTGCAGAAATCAGGGAATGGAT  97
            ||||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||
Sbjct  5    CTCATCTTCTTCAACAATGGCAGAATCAAAGACAAAATTTGCAGAAGTCAGGGAATGGAT  64

Query  98   CATCGAACATAAGCTTCGTACCGTTGGTTGCTTATGGCTAAGTGGTATCTCTGGTTCAAT  157
            | ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  65   CGTCGAACACAAGCTTCGTACCGTTGGTTGTTTATGGCTTAGTGGTATCTCTGGTTCAAT  124

Query  158  TGCTTATAATTGGTCTAAACCTGCCATGAAAACCAGTGTCAGAATCATCCACGCTAGGTT  217
             || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  CGCCTATAACTGGTCAAAACCTGCCATGAAAACCAGTGTCAGAATCATCCACGCTAGGTT  184

Query  218  GCATGCTCAGGCGCTGACATTAGCCGCTCTGGCTGGAGCAGCTGCAGTGGAGTACTATGA  277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  GCATGCTCAGGCGCTGACATTAGCCGCTCTGGCTGGAGCAGCTGCAGTGGAGTACTATGA  244

Query  278  TCACAAATCTGGAGCCACTGATCGAATCCCGAAATTTCTGAAGCCTGATAACTTAAATAA  337
            |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  245  TCACAAATCTGGAGCCACTGATAGAATCCCAAAATTTCTGAAGCCTGATAACTTAAATAA  304

Query  338  GGACTAGAAATCTCCGTACCATGGCTC  364
            |||||||||| | || |||||||||||
Sbjct  305  GGACTAGAAA-C-CCTTACCATGGCTC  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21023729539


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5