BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27770.1
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489552 jgi|Araly1|489552|fgenesh2_kg.6__2686__AT5G27770.1 839 0.0
Ahg928154 jgi|Araly1|928154|scaffold_300611.1 460 5e-129
> Ahg489552 jgi|Araly1|489552|fgenesh2_kg.6__2686__AT5G27770.1
Length=531
Score = 839 bits (454), Expect = 0.0
Identities = 509/535 (95%), Gaps = 6/535 (1%)
Strand=Plus/Plus
Query 70 CCATCTTCTTCAACTTCAGAGGTGAAAAATGAGTCGTGGTAACGCAGCAGCAGCTAAGGG 129
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1 CCATCTTCTTCAACTTCAGAGGTG-AAAATGAGTCGTGGTAACGCAGCAGCAACTAAGGG 59
Query 130 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCTAAACCTGTGGATGATAAGATTAT 189
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 60 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCGAAGCCTGTGGATGATAAGATTAT 119
Query 190 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGG 249
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAAAGGATTAAGGTTGGTGGTAAAGCTGG 179
Query 250 TGCTCTTGGTGATTCTGTTTCTATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGA 309
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||
Sbjct 180 TGCTCTTGGTGATTCTGTTTCCATCACTCGTGAAAAGAGCAAGATTACTGTCACTTCTGA 239
Query 310 TGGTCAATTCTCCAAGAGGTATCTTAAGTACTTGACAAAGAAGTACTTGAAGAAGCACAA 369
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 TGGTCAATTCTCCAAGAGATATCGCAAGTACTTGACAAAGAAGTACTTGAAGAAGCATAA 299
Query 370 CGTGAGGGATTGGCTTAGAGTGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAG 429
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CGTGAGGGATTGGCTCAGAGTGATTGCGGCAAACAAGGACCGTAACCTCTATGAGTTGAG 359
Query 430 GTACTTCAACATTGCCGAGAACGAAGCTGAGGAAGAAGATTAAAAC-CGGTTTTGGTCTA 488
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 360 GTACTTCAACATTGCCGAGAACGAAGCAGAGGAAGAAGATTAAAAAACGGTTTTGGGCTA 419
Query 489 GTGCTATATCCTCTGTTCCTCTATTTCTGTTGGTTTGGTTTTGATTCTTCAGTTTTGTGT 548
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 420 GTGCTATATCCTCTGTTCCTCTCTTTCTGTTGGTTTGGTTTTGATTCTTCAATTTTGTGT 479
Query 549 TAGATATTATTATGTAGTTTGATTGAAGTAATACTCTTTGC-TTTTGTTGTTGCG 602
||||||||||| | |||||||||||||||||||||||| | |||||||||||||
Sbjct 480 TAGATATTATT-T--AGTTTGATTGAAGTAATACTCTTTTCCTTTTGTTGTTGCG 531
> Ahg928154 jgi|Araly1|928154|scaffold_300611.1
Length=435
Score = 460 bits (249), Expect = 5e-129
Identities = 340/384 (89%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 93 GAAAAATGAGTCGTGGTAA-CGCAGCAGCAGCTAAGGGAAAGAAGAAGGGAGTTTCCTTC 151
||||||||||||| || || ||||| | || |||||||||||||||||||||||||||
Sbjct 16 GAAAAATGAGTCGAGG-AAGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTC 74
Query 152 ACTATCGATTGTTCTAAACCTGTGGATGATAAGATTATGGAGATTGCTT-CTTTAGAGAA 210
|| || |||||||| || ||||| ||||| ||||| ||||||||||||| | || |||||
Sbjct 75 ACCATTGATTGTTCGAAGCCTGTTGATGACAAGATCATGGAGATTGCTTCCCTT-GAGAA 133
Query 211 GTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCTGTTTC 270
|||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||||| |
Sbjct 134 GTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTCGGTGATTCTGTCAC 193
Query 271 TATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGATGGTCAATTCTCCAAGAGGTA 330
||||| ||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 194 AATCACCCGTGAGAAGAGCAAGATCACTGTTACTTCAGATGGCCAATTCTCCAAGAGGTA 253
Query 331 TCTT-AAGTACTTGACAAAGAAGTACTTGAAGAAGCACAACGTGAGGGATTGGCTTAGAG 389
| || ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 254 T-TTGAAGTACTTGACAAAGAAGTACCTCAAGAAGCACAATGTGAGGGATTGGCTTAGAG 312
Query 390 TGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCCGAGA 449
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 313 TGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGA 372
Query 450 ACGAAGCTGAGGAAGAAGATTAAA 473
|||| | ||||| ||||| ||||
Sbjct 373 ACGAGGGAGAGGAGGAAGACTAAA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25732968975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5