BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27770.1 Length=700 Score E Sequences producing significant alignments: (Bits) Value Ahg489552 jgi|Araly1|489552|fgenesh2_kg.6__2686__AT5G27770.1 839 0.0 Ahg928154 jgi|Araly1|928154|scaffold_300611.1 460 5e-129 > Ahg489552 jgi|Araly1|489552|fgenesh2_kg.6__2686__AT5G27770.1 Length=531 Score = 839 bits (454), Expect = 0.0 Identities = 509/535 (95%), Gaps = 6/535 (1%) Strand=Plus/Plus Query 70 CCATCTTCTTCAACTTCAGAGGTGAAAAATGAGTCGTGGTAACGCAGCAGCAGCTAAGGG 129 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 1 CCATCTTCTTCAACTTCAGAGGTG-AAAATGAGTCGTGGTAACGCAGCAGCAACTAAGGG 59 Query 130 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCTAAACCTGTGGATGATAAGATTAT 189 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 60 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCGAAGCCTGTGGATGATAAGATTAT 119 Query 190 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGG 249 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAAAGGATTAAGGTTGGTGGTAAAGCTGG 179 Query 250 TGCTCTTGGTGATTCTGTTTCTATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGA 309 ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| Sbjct 180 TGCTCTTGGTGATTCTGTTTCCATCACTCGTGAAAAGAGCAAGATTACTGTCACTTCTGA 239 Query 310 TGGTCAATTCTCCAAGAGGTATCTTAAGTACTTGACAAAGAAGTACTTGAAGAAGCACAA 369 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || Sbjct 240 TGGTCAATTCTCCAAGAGATATCGCAAGTACTTGACAAAGAAGTACTTGAAGAAGCATAA 299 Query 370 CGTGAGGGATTGGCTTAGAGTGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAG 429 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 300 CGTGAGGGATTGGCTCAGAGTGATTGCGGCAAACAAGGACCGTAACCTCTATGAGTTGAG 359 Query 430 GTACTTCAACATTGCCGAGAACGAAGCTGAGGAAGAAGATTAAAAC-CGGTTTTGGTCTA 488 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| Sbjct 360 GTACTTCAACATTGCCGAGAACGAAGCAGAGGAAGAAGATTAAAAAACGGTTTTGGGCTA 419 Query 489 GTGCTATATCCTCTGTTCCTCTATTTCTGTTGGTTTGGTTTTGATTCTTCAGTTTTGTGT 548 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 420 GTGCTATATCCTCTGTTCCTCTCTTTCTGTTGGTTTGGTTTTGATTCTTCAATTTTGTGT 479 Query 549 TAGATATTATTATGTAGTTTGATTGAAGTAATACTCTTTGC-TTTTGTTGTTGCG 602 ||||||||||| | |||||||||||||||||||||||| | ||||||||||||| Sbjct 480 TAGATATTATT-T--AGTTTGATTGAAGTAATACTCTTTTCCTTTTGTTGTTGCG 531 > Ahg928154 jgi|Araly1|928154|scaffold_300611.1 Length=435 Score = 460 bits (249), Expect = 5e-129 Identities = 340/384 (89%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 93 GAAAAATGAGTCGTGGTAA-CGCAGCAGCAGCTAAGGGAAAGAAGAAGGGAGTTTCCTTC 151 ||||||||||||| || || ||||| | || ||||||||||||||||||||||||||| Sbjct 16 GAAAAATGAGTCGAGG-AAGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTC 74 Query 152 ACTATCGATTGTTCTAAACCTGTGGATGATAAGATTATGGAGATTGCTT-CTTTAGAGAA 210 || || |||||||| || ||||| ||||| ||||| ||||||||||||| | || ||||| Sbjct 75 ACCATTGATTGTTCGAAGCCTGTTGATGACAAGATCATGGAGATTGCTTCCCTT-GAGAA 133 Query 211 GTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCTGTTTC 270 |||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||||| | Sbjct 134 GTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTCGGTGATTCTGTCAC 193 Query 271 TATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGATGGTCAATTCTCCAAGAGGTA 330 ||||| ||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| Sbjct 194 AATCACCCGTGAGAAGAGCAAGATCACTGTTACTTCAGATGGCCAATTCTCCAAGAGGTA 253 Query 331 TCTT-AAGTACTTGACAAAGAAGTACTTGAAGAAGCACAACGTGAGGGATTGGCTTAGAG 389 | || ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| Sbjct 254 T-TTGAAGTACTTGACAAAGAAGTACCTCAAGAAGCACAATGTGAGGGATTGGCTTAGAG 312 Query 390 TGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCCGAGA 449 ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 313 TGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGA 372 Query 450 ACGAAGCTGAGGAAGAAGATTAAA 473 |||| | ||||| ||||| |||| Sbjct 373 ACGAGGGAGAGGAGGAAGACTAAA 396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25732968975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5