BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27830.4
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489549 jgi|Araly1|489549|fgenesh2_kg.6__2683__AT5G27830.1 1454 0.0
> Ahg489549 jgi|Araly1|489549|fgenesh2_kg.6__2683__AT5G27830.1
Length=1114
Score = 1454 bits (787), Expect = 0.0
Identities = 951/1025 (93%), Gaps = 32/1025 (3%)
Strand=Plus/Plus
Query 54 ATCAGTGAAGAGAAAAGATGGGAAGATGTTTAACGAAGAAGGTGTTTTTGATTCAGAGTC 113
|||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 39 ATCAGTGAAGAG-AAAGATGGGAAGATGTTTATCGAAGAGGGTGTTTTTGATTCATAGTC 97
Query 114 CGATCTTGTTTCTTCATCTCCTGATCTCTTTATCGTCCGAACAATGTTTTCAGGTGCAGT 173
|||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 98 CGATCTTGTTTCTTCATCTCCTGATCTCTTTATCGT-----C--------C-GGTGCAGT 143
Query 174 GAAACCGGATTTGAAAGGAGTATGTGTTTCTAAAGGAGGGAGGTTTCCGCCATATGAGTT 233
|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 144 GAAACCAGATTTGAAAGGAGTATGTGTTTCTAAAGGAGGGCGGTTTCCGCCTTATGAATC 203
Query 234 GGAAGGGAAGCCTCCTAAGTCTGTTGGTAGGGGATCCAAGGATCTTACTCTGTGCCGGGT 293
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 204 AGAAGGAAAGCCTCCTAAATCTGTTGGTAGAGGATCCAAGGATCTTACTCTGTGCCGGGT 263
Query 294 GTTTCGTAAAAAGACTTGTTGTTCTTCTGTTCAGACTAACCCGGCTTTCGTAGCTGTTAG 353
||||||||||| |||||||||| || |||||||||| |||||||||||||||||||| ||
Sbjct 264 GTTTCGTAAAAGGACTTGTTGTACTGCTGTTCAGACAAACCCGGCTTTCGTAGCTGTCAG 323
Query 354 AAACCTGGCTACTTATGGAGAAGCTAGTCAAGAATGCTTGGAGTTGTTTGAGTTATTGGA 413
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AAACTTGGCTACTTATGGAGAAGCTAGTCAAGAATGCTTGGAGTTGTTTGAGTTATTGGA 383
Query 414 GTGTTCAATCTGTAACCCAAATGTTGGAATTCAACCGGGTCCTCCTCGTATATGCGCCTC 473
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 384 GTGTTCAATCTGTAACCCAAATGTTGGAATTCAACCAGGTCCTCCTCGTATTTGCGCCTC 443
Query 474 GTTCTGTGACAGAGTCTTTGAAGCCTGCAAAGATGCATACTTTGCCAGTAATGCACTTAA 533
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 444 GTTTTGTGACAGAGTCTTTGAAGCATGCAAAGATGCATACTTTGCCAGTAATGCACTTAC 503
Query 534 ACGGGTGATTGGCCCTTGTGGAGTAAACGACGACATAATCTGCATTAAGGCCTCAAATTG 593
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 504 ACGGGTGATTGGCCCTTGTGGAGTAAACGATGACATAATCTGCGTTAAGGCCTCAAATTG 563
Query 594 GGAATCCAATGGCACATCATTCTGTGAAGCAGCTGGTTTTGCTGTTCAAAGGAATGATGA 653
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 564 GGAATCCAATGGCACAGCATTCTGTGAAGCAGCTGGTTTTGCTGTTCAAACAAATCATGA 623
Query 654 TTCTAGAGAAAAACCGTGCTACGGAAGCAAAGCAAGTCTAGAATCAGTAGTGGAATCATG 713
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TTCTAGAGAAAAACCATGCTACGGAAGCAAAGCAAGTCTAGAATCAGTAGTGGAATCATG 683
Query 714 GTCAAGAGACTCTCGAAAGGAGACGCCTTTAAAAACTGAGACTTTGTCATGTTTTAAAGA 773
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 684 GTCAAGAGACTCTCGAAAGGAGACGCCTTTAAAGACTGAGACTTTGTCATGTTTTAAAGA 743
Query 774 TCTTCTCCAATGGGTTCGCGAAATGACAACGATTCAGAAA-ATTTCTTTGGGAATGTCGT 832
|||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 744 TCTTCTCCAATGGGTTCGGGAAATGACAACGATTCA-AAAGATTTCTTTGGGAATGTCGT 802
Query 833 TTCTTATAGCAGGAATGTTCTTGATCAGGTACTACAGGCAATCTAATAACCGTAATCAGA 892
||||| ||||||||||||| || | | | | ||||||||||||||||||||||||||
Sbjct 803 TTCTTGTAGCAGGAATGTT-TT--T--G--A-T-CAGGCAATCTAATAACCGTAATCAGA 853
Query 893 AGCAGCGACTAGCTGCGATTCAGAGGACCGCTAGAAGATTGAGAGGGAACGGGAACGGGG 952
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 854 AGCAGCGGCTAGCTGCGATTCAGAGGACCGCTAGAAGATTGGGAGGGAACGGGAATGGGA 913
Query 953 ATTCATACAGTGCAGCTATAAATAGAAGAACAAGCTCTGATTAAGCTTATGGAATGAATA 1012
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 914 ATTCATACAGTGCAGCTATAAATAGAAGAACAAGCTCTGATTAAGGTTATCGAAGGA-TA 972
Query 1013 TTTTA---CAGTAGTTTGTAAAAG-CCATGAATTTAACTGTTATCAATAGTAAAGGCTTG 1068
||||| |||||||||||||||| ||||||||||| |||||| ||| ||||||||||||
Sbjct 973 TTTTAAAGCAGTAGTTTGTAAAAGACCATGAATTTA-CTGTTACCAAAAGTAAAGGCTTG 1031
Query 1069 TCTCA 1073
|||||
Sbjct 1032 TCTCA 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5