BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27840.2
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489548 jgi|Araly1|489548|fgenesh2_kg.6__2682__AT5G27840.1 1788 0.0
Ahg928157 jgi|Araly1|928157|scaffold_300614.1 1070 0.0
> Ahg489548 jgi|Araly1|489548|fgenesh2_kg.6__2682__AT5G27840.1
Length=1476
Score = 1788 bits (968), Expect = 0.0
Identities = 1093/1151 (95%), Gaps = 18/1151 (2%)
Strand=Plus/Plus
Query 6 TTTTAAGACAAAATAGA-TT-T---CTTCT----TCTCTTTGTTTGACCCACATTTTCTC 56
||||||||||||||||| || | ||||| |||||| |||||||||||||||||||
Sbjct 1 TTTTAAGACAAAATAGATTTGTAAACTTCTGGGCTCTCTTCGTTTGACCCACATTTTCTC 60
Query 57 TGGAAAAAATTCGTCT-ACTTTCTCCGATC-GTCTCTTCATTGATCGGAAAACCAACAAC 114
|||||||| |||||| | ||||||||||| || ||||||||||||||||||||||| ||
Sbjct 61 GGGAAAAAA-TCGTCTGA-TTTCTCCGATCGGT-TCTTCATTGATCGGAAAACCAACCAC 117
Query 115 GACCCATTATTCCTCTCCTGTTTCTGGCGCAAACCCTTGTAGCAAGTTTT-GATTTTGGT 173
||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 118 GACCCATTATTCCTCGCCTGTTTCTGGCGCAAACCCTTGTATCAA-TTTTGGATTTTGGT 176
Query 174 GAGAAAATATTTTAGGGATCTGAAGAGAAAGAACACGATGATGACGAGTATGGAAGGGAT 233
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGAAAA-A-TTTAGGGATCTGAAGAGAAAGAACACGATGATGACGAGTATGGAAGGGAT 234
Query 234 GGTGGAGAAAGGAGTATTGGATGATATTATAAGAAGATTGTTAGAAGGTAAAGGAGGCAA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GGTGGAGAAAGGAGTATTGGATGATATTATAAGAAGATTGTTAGAAGGTAAAGGAGGCAA 294
Query 294 ACAGGTTCAGCTTTCCGAGAGCGAGATTCGTCAACTCTGCTTTAACGCTCGTCAAATCTT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACAGGTTCAGCTTTCCGAGAGCGAGATTCGTCAACTCTGCTTTAACGCTCGTCAAATCTT 354
Query 354 CCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCGGTGATATTCA 413
|||||||||||||||||| || |||||||||||||||||||| ||||| |||||||| ||
Sbjct 355 CCTCTCTCAACCTAATCTTCTCGATCTCCATGCCCCAATTCGTATCTGTGGTGATATCCA 414
Query 414 TGGTCAATATCAAGATCTTTTGAGGTTGTTTGAATACGGAGGTTATCCTCCTTCAGCAAA 473
||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 415 TGGCCAGTATCAAGATCTTTTGAGGTTATTTGAATACGGAGGCTATCCTCCTTCAGCAAA 474
Query 474 CTATCTATTCCTTGGTGATTACGTTGACAGAGGCAAACAAAGTCTTGAGACCATATGTTT 533
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 475 CTATCTATTCCTTGGTGATTACGTTGACAGAGGCAAGCAAAGTCTTGAGACCATATGTTT 534
Query 534 GCTTCTTGCTTACAAGATACGGTACCCATCGAAGATATATCTGTTGAGAGGGAACCATGA 593
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 535 GCTTCTTGCTTACAAGATTCGGTATCCGTCGAAGATATATCTGTTGAGAGGGAACCATGA 594
Query 594 GGATGCTAAGATCAACAGGATTTACGGGTTTTATGACGAGTGCAAACGGAGATTCAATGT 653
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 GGATGCTAAGATCAATAGGATTTACGGGTTTTATGACGAGTGCAAACGGAGATTTAATGT 654
Query 654 ACGACTCTGGAAGGTGTTTACTGATTGCTTCAACTGTTTACCTGTAGCTGCACTTATTGA 713
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 655 ACGACTTTGGAAGGTGTTTACTGATTGCTTCAACTGTTTACCCGTAGCTGCACTCATTGA 714
Query 714 TGAGAAGATACTGTGTATGCACGGTGGTTTGTCACCAGATTTGGATAATTTGAATCAGAT 773
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 715 CGAGAAGATACTGTGTATGCACGGTGGGTTGTCACCAGATTTGGACAATTTGAATCAGAT 774
Query 774 TCGAGAGATTCAAAGGCCTATTGAGATTCCAGACAGTGGTCTTCTTTGTGATTTACTTTG 833
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCGAGAGATTCAGCGGCCTACAGAGATTCCAGACAGTGGTCTTCTTTGTGATTTACTTTG 834
Query 834 GTCAGATCCTGATCAGAAGATTGAAGGTTGGGCTGATAGTGATCGAGGTATCTCTTGCAC 893
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 GTCAGATCCTGATCAGAAGATTGAAGGGTGGGCTGATAGTGATCGAGGTATCTCTTGCAC 894
Query 894 TTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCG 953
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTTTGGAGCCGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCG 954
Query 954 AGGCCATCAGGTAGTAGAAGACGGGTATGAGTTTTTCGCAAAACGGAGATTAGTCACGAT 1013
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGGACATCAGGTAGTGGAAGACGGGTATGAGTTTTTCGCAAAACGGAGATTAGTCACGAT 1014
Query 1014 ATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAACGCTGGTGCGTTATTAAGCGTTGA 1073
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1015 ATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAACGCTGGTGCATTATTAAGCGTGGA 1074
Query 1074 CGAGTCTCTTGTATGTTCCTTTGAGATTATGAAACCAGCCCCAGCTTCAAGCAGTCATCC 1133
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1075 TGAGTCTCTTGTTTGCTCCTTTGAGATTATGAAACCCGCCCCAGCTTCAAGCAGTCATCC 1134
Query 1134 TCTCAAGAAGG 1144
|||||||||||
Sbjct 1135 TCTCAAGAAGG 1145
Score = 327 bits (177), Expect = 1e-88
Identities = 281/326 (86%), Gaps = 28/326 (9%)
Strand=Plus/Plus
Query 1237 GGTACCGAAGATGGGGAAGTCTTGAATATCTAG-TC-CTCTCTATGTCAATAT-CACGGT 1293
||||||||| ||||||||||||||||| ||||| || |||||| | || | | ||| |
Sbjct 1144 GGTACCGAAAATGGGGAAGTCTTGAATTTCTAGTTCTCTCTCTCTCTCTGT-TCCAC--T 1200
Query 1294 TCCACAGCTCAAGCTAGGCTCAAGATTCTGAGTGTCATTACAACTGTGTCTGTGTCTCCA 1353
||||||||||||||||||| ||||||| || |||||||| |||||||| ||||||||||
Sbjct 1201 TCCACAGCTCAAGCTAGGCAAAAGATTCAGACTGTCATTATAACTGTGTTTGTGTCTCCA 1260
Query 1354 ATTATGGGTTGAATGCAATGAAGAACCCAAAGGGTACTTACTTAGTCATCAAACAACTTC 1413
||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1261 GTTATGTGTTGAATGCAATGAAGAACCCAAAGGGTACTTA----GTC-T----------- 1304
Query 1414 TGTaaaaaaacaaaaaaagtgagaaaacaaaaaCACACTTTGTTTTCTTTGTATAGATGC 1473
|||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1305 -GTAAAAAACCAAAAAA-GTGAGAAAACAAAAACACACTTCGTTTTCTTTGTATAGATGC 1362
Query 1474 AGAAAATGAtctgtcttctgcttctggagattttatctccttattagtctctcttttctt 1533
|||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1363 AGAA--TGATCTGTCTTCTGCTTCTGGGGATTTTATCTCCTTATTAGTCTCT-TTT-CTT 1418
Query 1534 tcttcttttagcccttttagtttaat 1559
||||||||||||||||||||||||||
Sbjct 1419 TCTTCTTTTAGCCCTTTTAGTTTAAT 1444
> Ahg928157 jgi|Araly1|928157|scaffold_300614.1
Length=994
Score = 1070 bits (579), Expect = 0.0
Identities = 819/937 (87%), Gaps = 8/937 (1%)
Strand=Plus/Plus
Query 212 TGATGACGAGTATGGAAGGGATGGTGGAGAAAGGAGTATTGGATGATATTATAAGAAGAT 271
||||||||| ||||||||||||| |||||| || || |||||||||||||| || ||||
Sbjct 19 TGATGACGACTATGGAAGGGATGATGGAGATGGGTGTGTTGGATGATATTATTAGGAGAT 78
Query 272 TGTTAGAAGGTAAAGGAGGCAAACAGGTTCAGCTTTCCGAGAGCGAGATTCGTCAACTCT 331
|||| |||||||||||||| ||||||||||||||||| |||| |||||| |||||||| |
Sbjct 79 TGTTGGAAGGTAAAGGAGGGAAACAGGTTCAGCTTTCGGAGATCGAGATCCGTCAACTTT 138
Query 332 GCTTTAACGCTC-GTCAAATCTTCCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCA 390
|| ||||||| | | ||||||||||| ||||| |||||||| || || || ||||||||
Sbjct 139 GCGTTAACGC-CAGACAAATCTTCCTTTCTCAGCCTAATCTTCTCGAGCTTCATGCCCCC 197
Query 391 ATTCGCATCTGCGGTGATATTCATGGTCAATATCAAGATCTTTTGAGGTTGTTTGAATAC 450
||||||||||| |||||||| ||||| || || ||||||||| ||||| | |||||||||
Sbjct 198 ATTCGCATCTGTGGTGATATCCATGGACAGTACCAAGATCTTCTGAGGCTATTTGAATAC 257
Query 451 GGAGGTTATCCTCCTTCAGCAAACTATCTATTCCTTGGTGATTACGTTGACAGAGGCAAA 510
||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 258 GGAGGCTATCCTCCTTCAGCTAACTATCTCTTCCTCGGTGATTACGTTGATAGAGGCAAG 317
Query 511 CAAAGTCTTGAGACCATATGTTTGCTTCTT-GCTTACAAGATACGGTACCCATCGAAGAT 569
||||||||||| || |||||||| | |||| ||||| || || ||||||||||| |||||
Sbjct 318 CAAAGTCTTGAAACAATATGTTTAC-TCTTGGCTTATAAAATCCGGTACCCATCCAAGAT 376
Query 570 ATATCTGTTGAGAGGGAACCATGAGGATGCTAAGATCAACAGGATTTACGGGTTTTATGA 629
|| ||| |||||||| |||||||| || |||||||||||||||||||||||||| |||||
Sbjct 377 ATTTCTCTTGAGAGGAAACCATGAAGACGCTAAGATCAACAGGATTTACGGGTTCTATGA 436
Query 630 CGAGTGCAAACGGAGATTCAATGTACGACTCTGGAAGGTGTTTACTGATTGCTTCAACTG 689
||| ||||| ||||||||||||||||| || |||||| | || || ||||||||||||||
Sbjct 437 CGAATGCAAGCGGAGATTCAATGTACGGCTTTGGAAGATATTCACCGATTGCTTCAACTG 496
Query 690 TTTACCTGTAGCTGCACTTATTGATGAGAAGATACTGTGTATGCACGGTGGTTTGTCACC 749
|||||| |||||||| || ||||| |||||||| || |||||||| ||||| ||||||||
Sbjct 497 TTTACCGGTAGCTGCTCTCATTGACGAGAAGATTCTATGTATGCATGGTGGGTTGTCACC 556
Query 750 AGATTTGGATAATTTGAATCAGATTCGAGAGATTCAAAGGCCTATTGAGATTCCAGACAG 809
|| ||||| || |||| ||||||||| |||| |||||||||| |||||||||||||
Sbjct 557 GGAATTGGAAAACTTGAGGCAGATTCGAAAGATCCAAAGGCCTACGGAGATTCCAGACAA 616
Query 810 TGGTCTTCTTTGTGATTTACTTTGGTCAGATCCTGATCAGAAGATTGAAGGTTGGGCTGA 869
|||||||||||||||| |||||||||| ||||||||||| |||| |||||||||| ||||
Sbjct 617 TGGTCTTCTTTGTGATCTACTTTGGTCTGATCCTGATCAAAAGAATGAAGGTTGGACTGA 676
Query 870 TAGTGATCGAGGTATCTCTTGCACTTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAA 929
||| |||||||||||||| ||||| |||||||| ||| ||||||||| || ||||||||
Sbjct 677 TAGCGATCGAGGTATCTCCTGCACGTTTGGAGCCGATGTAGTCGCTGACTTTTTGGATAA 736
Query 930 GAATGATCTTGACCTCATTTGCCGAGGCCATCAGGTAGTAGAAGACGGGTATGAGTTTTT 989
||||||||| || |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 737 GAATGATCTCGATCTCATTTGCCGAGGCCATCAGGTAGTGGAAGATGGGTACGAGTTTTT 796
Query 990 CGCAAAACGGAGATTAGTCACGATATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAA 1049
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 797 CGCAAAACGGAGATTAGTCACGATATTTTCAGCTCCAAACTATGGTGGGGAGTTTGACAA 856
Query 1050 CGCTGGTGCGTTATTAAGCGTTGA-CGAGTCTCTTGTATGTTCCTTTGAGATTATGAAAC 1108
|| ||||| ||||| || || || | | ||||| || || |||||||||||| ||||||
Sbjct 857 TGCCGGTGCATTATTGAGTGTGGATCAA-TCTCTCGTTTGCTCCTTTGAGATTCTGAAAC 915
Query 1109 CAGCCCCAGCTTCAAGCAGTCA-TCCTCTCAAGAAGG 1144
| || |||||||| ||||| || ||||||||||||||
Sbjct 916 CGGCTCCAGCTTCTAGCAG-CAATCCTCTCAAGAAGG 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5