BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27850.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489546 jgi|Araly1|489546|fgenesh2_kg.6__2680__AT5G27850.1 1107 0.0
Ahg477850 jgi|Araly1|477850|fgenesh2_kg.3__551__AT3G05590.1 682 0.0
Ahg930003 jgi|Araly1|930003|scaffold_302460.1 139 3e-32
> Ahg489546 jgi|Araly1|489546|fgenesh2_kg.6__2680__AT5G27850.1
Length=742
Score = 1107 bits (599), Expect = 0.0
Identities = 700/748 (94%), Gaps = 10/748 (1%)
Strand=Plus/Plus
Query 1 CTCTCGCAGACGCAGCCATGGGTATCGATCTTATCGCAGGAGGTAAGAGTAAGAAGACCA 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 CTCTCGCAGACGCAGCCATGGGTATCGATCTTATCGCCGGAGGTAAGAGTAAGAAGACAA 60
Query 61 AAAGGACTGCTCCTAAGTCCGATGATGTCTACCTAAAGCTTCTCGTCAAGCTTTACCGGT 120
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 61 AAAGGACTGCTCCAAAGTCCGATGATGTTTACCTCAAGCTTCTCGTCAAGCTTTACCGGT 120
Query 121 TTTTGGTGAGGAGATCT-AACAGCAACTTCAATGCTGTGATTCTGAAAAGGCTTTTCATG 179
||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||||
Sbjct 121 TTTTGGTGAGGAGATCTGAA-AGCAAGTTCAATGCTGTGATTCTCAAGAGGCTTTTCATG 179
Query 180 AGCAAAGTCAACAAAGCTCCTCTTTCACTCTCTAGGCTTGTAGAGTTCATGACTGGCAAG 239
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 180 AGCAAAGTCAACAAAGCTCCTCTTTCGCTCTCTAGGCTTGTGGAGTTCATGACGGGCAAG 239
Query 240 GATGACAAGATTGCTGTGTTGGTTGGAACTATCACTGATGATTTGAGAGTTCATGAGATT 299
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GAGGACAAGATTGCTGTGTTGGTTGGAACCATCACTGATGATTTGAGAGTTCATGAGATT 299
Query 300 CCTGCCATGAAGGTTACTGCCTTGAGGTTTACTGAGAGGGCTAGGGCTAGAATTGAGAAA 359
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 300 CCTGCCATGAAAGTTACTGCCTTGAGGTTCACAGAGAGGGCTAGAGCTAGAATTGAGAAA 359
Query 360 GCTGGTGGAGAGTGCTTAACCTTTGACCAGCTTGCTCTCAGAGCTCCATTGGGACAGAAC 419
||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 360 GCTGGGGGAGAGTGCTTAACCTTTGACCAGCTTGCACTCAAAGCTCCATTGGGCCAGAAC 419
Query 420 ACAGTTCTTCTTAGAGGACCAAAGAACTCGCGTGAAGCAGTGAAGCATTTCGGACCTGCT 479
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 420 ACAGTTCTCCTTAGAGGACCAAAGAACTCTCGTGAAGCAGTGAAGCATTTTGGACCTGCT 479
Query 480 CCTGGTGTGCCACACAGTAACACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAG 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCTGGTGTGCCACACAGTAGCACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAG 539
Query 540 AAAGCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGA-AGA-TGTT-TTCTGG 596
|||||||||||||||||||||||||||||||||||||||||||| | | | || || ||
Sbjct 540 AAAGCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGATA-ACT-TTGTTGTG- 596
Query 597 TTTCGTTTTGCTTGGTTTAAGTATCGAAGTTTTGGTAGGGAACGCTGGTTCCTCTTTACC 656
|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 597 TTTCGTTTTGCTTGGTTTCAGTATCGAATTTTTGGTAGGGAACACTGGTTCCTCTTTGCC 656
Query 657 CTGTTCCAGACTTTGTTTTAAGTTCTGTTTTTCTATTCTCAAGACAATTGGATATTTTGC 716
||| || |||| |||||||||||||||||| || |||| | ||||||||||||||||||
Sbjct 657 CTGATCGAGACATTGTTTTAAGTTCTGTTT--CTGTTCTTACGACAATTGGATATTTTGC 714
Query 717 TTTGTCTTTTAATCTTACTACTATTAGC 744
||||||||||||||||| ||||| ||||
Sbjct 715 TTTGTCTTTTAATCTTATTACTACTAGC 742
> Ahg477850 jgi|Araly1|477850|fgenesh2_kg.3__551__AT3G05590.1
Length=704
Score = 682 bits (369), Expect = 0.0
Identities = 508/576 (88%), Gaps = 5/576 (1%)
Strand=Plus/Plus
Query 18 ATGGGTATCGATCTTATCGCAGGAGGTAAGAGTAAGAAGACCAAAAGGACTGCTCCTAAG 77
|||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 44 ATGGGTATTGATCTGATCGCCGGAGGTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAG 103
Query 78 TCCGATGATGTCTACCTAAAGCTT-CTCGTCAAGCTTTACCGGTTTTTGGTGAGGAGATC 136
|| |||||||||||||| |||||| || |||||||||||||||||| |||| |||||| |
Sbjct 104 TCTGATGATGTCTACCTCAAGCTTACT-GTCAAGCTTTACCGGTTTCTGGTAAGGAGAAC 162
Query 137 TAACAGCAACTTCAATGCTGTGAT-TCTGAAAAGGCTTTTCATGAGCAAAGTCAACAAAG 195
| | ||||| |||||||||||||| | |||| ||||| ||||||||||||||||||||||
Sbjct 163 TCAGAGCAAGTTCAATGCTGTGATAT-TGAAGAGGCTCTTCATGAGCAAAGTCAACAAAG 221
Query 196 CTCCTCTTTCACTCTCTAGGCTTGTAGAGTTCATGACTGGCAAGGATGACAAGATTGCTG 255
|||||||||| || ||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 222 CTCCTCTTTCTCTTTCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCTG 281
Query 256 TGTTGGTTGGAACTATCACTGATGATTTGAGAGTTCATGAGATTCCTGCCATGAAGGTTA 315
| |||||||||||| | |||||||||||||| || || |||||||| || ||||| || |
Sbjct 282 TCTTGGTTGGAACTGTTACTGATGATTTGAGGGTACACGAGATTCCAGCAATGAAAGTGA 341
Query 316 CTGCCTTGAGGTTTACTGAGAGGGCTAGGGCTAGAATTGAGAAAGCTGGTGGAGAGTGCT 375
||||| |||| || || ||||| ||||||||| | |||||||||||||| || || ||||
Sbjct 342 CTGCCCTGAGATTCACAGAGAGAGCTAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCT 401
Query 376 TAACCTTTGACCAGCTTGCTCTCAGAGCTCCATTGGGACAGAACACAGTTCTTCTTAGAG 435
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 402 TAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAG 461
Query 436 GACCAAAGAACTCGCGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACA 495
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACA 521
Query 496 GTAACACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAGAAAGCTAGAGGAAAGC 555
|| || | ||||||||||| || |||||||||||||| ||||| || ||||||| |
Sbjct 522 GTCACTCCAAGCCATATGTGCGGGGCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAGGA 581
Query 556 GAAAGAGTCGTGGATTCAAGGTCTAAGAA-GATGTT 590
| |||||||||||||||||||| |||||| | ||||
Sbjct 582 GGAAGAGTCGTGGATTCAAGGTTTAAGAAAGTTGTT 617
> Ahg930003 jgi|Araly1|930003|scaffold_302460.1
Length=454
Score = 139 bits (75), Expect = 3e-32
Identities = 93/101 (92%), Gaps = 4/101 (4%)
Strand=Plus/Minus
Query 142 GCAACTTCAATGCTGTGAT-TCTGAAAAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCT 200
|||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 154 GCAAGTTCAATGTTGTGATAT-TGAAAAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCT 96
Query 201 CTTTCACTC-TCTAGGCTTGTAGAGTTCATGACTGGCAAGG 240
||||| | | ||||||||||| |||||||||||||||||||
Sbjct 95 CTTTCGC-CATCTAGGCTTGTGGAGTTCATGACTGGCAAGG 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5