BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27860.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489545 jgi|Araly1|489545|fgenesh2_kg.6__2679__AT5G27860.1 1158 0.0
> Ahg489545 jgi|Araly1|489545|fgenesh2_kg.6__2679__AT5G27860.1
Length=797
Score = 1158 bits (627), Expect = 0.0
Identities = 748/805 (93%), Gaps = 13/805 (2%)
Strand=Plus/Plus
Query 1 TGTTTGATTTGTCCTCTCAACAATGGCGGCTTCATCATCTTCGTCTTCCTCCGACGTCTC 60
|||||||||| ||||| |||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1 TGTTTGATTTTTCCTCCCAACAATGGCGGCTTCATCATC-T--TCTTCCTCTGACGTCTC 57
Query 61 CTCTGATTCTTCAGACTCTCATCGTCGCCGTAAGGATCGCCGTCATCATCGTAGAAACGA 120
|||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 58 CTCTGACTCTTCAGACTCTCATCGTCGCCGTAAGGATCGCCGCCGTCACCGTAGAAACGA 117
Query 121 TCGAGACAGAGACTCGCTCAAAGTACGGAAAAAGAGCCGATCCACCTCGAAAAAACGCCG 180
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 118 CCGAGACAGAGACTCGCTCAAAGTACGGAAGAAGAGTCGATCCACCTCGAAAAAACGCCG 177
Query 181 TAGACGCCAACACTCCTCCGATTCCTCTGATTCTTCTTACTCCGATTCCTCCAGTGAGAG 240
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 TAGACGCCAGCATTCCTCCGATTCCTCTGATTCTTCTTACTCCGATTCATCCAGTGAGAG 237
Query 241 CTCAGATAGTGAGCATGAGAAGTCACGAAGGCACAAGAAGCATGAAAAGCCAAAGAAGGC 300
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 238 CTCAGATAGTGAGCACGAGAGGTCACGAAGGCACAAGAAGCATGCAAAGCCAAAGAAGGC 297
Query 301 TAAGGATAAGGAACGAAGCAAGAGTCATCGTCATAAACGGCATAAGAACAGAGAAAGAAA 360
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 298 TAAGGATAAGGAACGAAACAAGAGTCATCGTCATAAACGGCATAAGAACAGAGATAGAAA 357
Query 361 GAAAGGGGAAGGAGAAGGAAGTAGCGGGCCTGTAAAACTATCAAAGTTTTTGAACCGCGA 420
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 358 GAAAGGGGAAGGAGAAGGAAGCAGCGGGCCTGTTAAACTATCAAAGTTTTTGAACCGTGA 417
Query 421 CAAAGACGATGGTGAACGTAGAAGTGCTGTTTCAGGGaaaaaaaTTCTGCTGAAGGTTGA 480
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAAAGAGGATGGTGAGCGTAGAAGTGCTGTTTCAGGGAAAAAAATTCTGCTGAAGGTTGA 477
Query 481 CAAGTCCAAAGAGGACAAAGCTGCAGAGAGCAAAAGAAATGAACTGCTTAAGTTCTTAAA 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 CAAGTCCAAAGAGGACAAAGCTGCAGAGAGCAAAAGAAATGAACTACTTAAGTTCTTAAA 537
Query 541 CGCAAGTTTCGACTAGTATTTTTCGCTTTTGTCTCGATGACAGAATCTCAACAACAAGAA 600
||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||| ||
Sbjct 538 CGCAAGTTTTGACTAGTATTTTTCGCTTTTGTCTCCATGACAGGATCTCAAGAACAACAA 597
Query 601 GAATGTAAGATGGTATTTGATTAGATTCTAGTTTCCGTATCTGTTTGGTGATTCAGATCC 660
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 598 GAATGTAAGATGCTATATGATTAGATTCTAGTTTGCGTATCTGTTTGGTGATTCGGATGC 657
Query 661 TTGTTTTGTTTTTCCAGAGGACTAATCCTGTCATGGATTTG--TT-TTACTTCTATTTTC 717
||||||||||| ||||||||||||| ||||||||||||||| || ||| || || |
Sbjct 658 TTGTTTTGTTTATCCAGAGGACTAAGCCTGTCATGGATTTGAGTTGTTA-TTATAGC--C 714
Query 718 TTGTTTAGTCTTA-AAG-TTTGTGTTATCGCACACTGTTCTTCTTGGAAACCCGAGAAAT 775
| || | |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AT-TTGAA-CTTATAAACTTTGTGTTATCGCACACTGTTCTTCTTGGAAACCCGAGAAAT 772
Query 776 GGTTACTGAGATTTTATCCGTGCGT 800
|||||||||||||||||| ||||||
Sbjct 773 GGTTACTGAGATTTTATCGGTGCGT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5