BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27870.1
Length=2199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942303 jgi|Araly1|942303|scaffold_602847.1 2531 0.0
> Ahg942303 jgi|Araly1|942303|scaffold_602847.1
Length=1983
Score = 2531 bits (1370), Expect = 0.0
Identities = 1597/1709 (93%), Gaps = 5/1709 (0%)
Strand=Plus/Plus
Query 1 ATGTCATATGGATACGACGATGAGGATGCAAAGAGGAAAAAGAGATATGTAATTATCTCT 60
||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 26 ATGTCATATGGGTACGACGAT---GATGCAAAGAGGAAAAAGAGATACGTTATTATCTCT 82
Query 61 ATCTCCTCTGTTCTTTTAATCTCCATGGTTGTCGCTGTTACCATAGGTGTTAGCGTCAAC 120
||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 83 ATCTCCTCTGTTCTTTTGATCTCCATGGTTGTTGCAGTTACCATAGGCGTTAGCGTCAAC 142
Query 121 AAGTCCGATAACGCTGGTGACGAAGAAATCACAACTTCTGTTAAAGCCATCAAAGATGTT 180
||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 143 AAGTCCGATAACGGAGGTGAAGGAGAAATCACAACTTCTGTTAAAGCCATCAAAGATGTT 202
Query 181 TGTGCACCGACGGATTACAAAGAGACTTGTGAGGATACACTAAGGAAAGATGCGAAGGAC 240
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 203 TGCGCACCGACGGATTACAAGGAGACTTGTGAGGATACTCTAAGGAAAGATGCGAAGAAC 262
Query 241 ACATCAGACCCGTTGGAGCTGGTGAAGACAGCTTTTAACGCAACGATGAAACAAATAAGT 300
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 263 ACATCAGACCCGTTGGAGCTAGTGAAGACAGCTTTTAACGCGACGATGAAACAGATAAGT 322
Query 301 GACGTGGCAAAGAAGTCACAAACTATGATTGAGCTACAAAAGGATCCAAGGGCAAAGATG 360
|||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||
Sbjct 323 GACGTGGCAAAGAAGTCACAGACTATGATTGAGCTACAAAAGGATCCGAGGACGAAGATG 382
Query 361 GCGTTGGATCAATGCAAGGAGCTAATGGATTACGCAATCGGTGAGCTTAGTAAGTCGTTT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GCTTTGGATCAATGCAAGGAGCTAATGGATTACGCAATCGGTGAGCTTAGTAAGTCGTTT 442
Query 421 GAAGAGTTGGGGAAGTTCGAGTTTCATAAAGTTGATGAGGCCTTGGTTAAGTTGAGGATT 480
|| ||||| |||| |||||| |||||||| |||||||| || ||| ||||| ||||||||
Sbjct 443 GAGGAGTTAGGGAGGTTCGAATTTCATAAGGTTGATGAAGCGTTGATTAAGCTGAGGATT 502
Query 481 TGGCTTAGTGCGACGATAAGCCATGAGCAAACTTGTCTTGATGGGTTTCAAGGGACACAA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TGGCTTAGTGCGACGATTAGCCATGAGCAAACTTGTCTTGATGGGTTTCAAGGGACACAA 562
Query 541 GGTAATGCTGGTGAGACGATAAAGAAGGCGTTGAAAACCGCGGTGCAGTTAACGCATAAC 600
|| ||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 563 GGGAATGCAGGTGAGACGATTAAGAAGGCATTGAAAACTGCGGTGCAGTTAACGCATAAC 622
Query 601 GGGCTTGCAATGGTTACCGAAATGTCGAATTACTTAGGACAAATGCAGATTCCGGAGATG 660
|||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 623 GGGCTTGCAATGGTCAGCGAGATGTCGAATTACTTGGGACAAATGCAGATTCCGGAGATG 682
Query 661 AATAGTAGACGGTTGTTGTCCCAAGAGTTTCCTTCGTGGATGGAT-GCGCGAGCACGTAG 719
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 683 AATAGTCGACGGTTGTTGTCCCAAGAGTTTCCTTCGTGGATGGATGGC-CGAGCGCGTAG 741
Query 720 GCTATTGAACGCTCCTATGTCCGAGGTAAAACCCGATATCGTGGTGGCGCAAGACGGAAG 779
||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 742 GCTTTTGAATGCTCCTATGTCCGAGGTCAAACTGGATATCGTGGTGGCGCAAGACGGAAG 801
Query 780 TGGTCAGTACAAGACGATTAACGAGGCATTGAATTTTGTCCCGAAGAAGAAGAACACGAC 839
|||||||||||||||||| || || |||||||||| ||||||||||||||||||||||||
Sbjct 802 TGGTCAGTACAAGACGATCAATGAAGCATTGAATTATGTCCCGAAGAAGAAGAACACGAC 861
Query 840 TTTCGTGGTTCATATTAAGGAAGGAATCTATAAAGAGTATGTTCAGGTGAATAGGAGCAT 899
|||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 862 TTTCGTGGTTCACATTAAGGCCGGAATCTATAAAGAGTACGTTCAGGTGAATAGGAGCAT 921
Query 900 GACACATCTAGTTTTCATAGGTGATGGCCCCGACAAAACTGTCATTTCTGGCAGCAAAAG 959
||||||||| ||||| || || |||||||| || |||||||||||||| |||||||||||
Sbjct 922 GACACATCTGGTTTTTATCGGCGATGGCCCTGAGAAAACTGTCATTTCCGGCAGCAAAAG 981
Query 960 TTACAAGGACGGTATTACTACCTACAAAACAGCCACCGTTGCAATCGTTGGAGATCATTT 1019
||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 982 TTACAAGGATGGTATTACCACCTACAAAACCGCCACTGTTGCAATCGTTGGAGATCATTT 1041
Query 1020 CATTGCCAAGAACATTGCCTTCGAGAACACAGCCGGGGCAATAAAGCATCAAGCGGTTGC 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1042 CATTGCCAAGAACATTGGGTTCGAGAACACAGCCGGGGCAATAAAGCATCAAGCAGTTGC 1101
Query 1080 TATTAGGGTTCTAGCAGATGAGTCAATATTCTACAATTGTAAATTCGATGGTTACCAAGA 1139
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GATTAGGGTTCTATCAGATGAGTCAATATTCTACAATTGTAAATTCGATGGTTACCAAGA 1161
Query 1140 CACTCTATATGCACATTCCCACCGTCAGTTTTACCGTGACTGTACTATCTCGGGCACAAT 1199
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1162 TACTCTATATGCACATTCCCACCGTCAGTTTTACCGCGACTGTACTATCTCGGGCACCAT 1221
Query 1200 CGATTTTCTCTTTGGAGACGCAGCTGCGGTATTCCAAAACTGTACTTTACTGGTGAGAAA 1259
|||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1222 CGATTTTCTCTTTGGAGATGCAGCTGCGGTATTCCAGAATTGTACTTTATTGGTGAGAAA 1281
Query 1260 GCCACTTCTAAACCAAGCATGCCCCATTACAGCCCATGGACGTAAAGATCCGCGAGAATC 1319
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GCCACTTCTAAATCAAGCATGCCCCATTACAGCCCATGGACGTAAAGATCCGCGAGAATC 1341
Query 1320 CACGGGATTTGTTCTCCAAGGATGTACGATTGTTGGCGAACCGGATTACTTGGCAGTCAA 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1342 CACGGGATTTGTTCTCCAAGGATGTACGATTGTTGGTGAACCGGATTACTTGGCAGTCAA 1401
Query 1380 GGAACAGAGCAAAACTTATCTTGGAAGACCATGGAAAGAGTATTCAAGAACTATCATCAT 1439
|||| | |||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1402 GGAAAATAGCAAAGCTTACCTTGGAAGGCCATGGAAAGAGTATTCAAGAACTATCATCAT 1461
Query 1440 GAACACGTTCATACCAGATTTTGTTCCGCCGGAAGGATGGCAACCGTGGCTCGGCGAATT 1499
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 1462 GAACACGTTCATCCCAGATTTTATTCCGCCGGAAGGATGGCAACCGTGGCTTGGCGATTT 1521
Query 1500 CGGTCTTAACACACTTTTCTACTCGGAGGTGCAGAACACTGGGCCGGGTGCAGCTATCAC 1559
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 1522 CGGTCTTAACACACTTTTCTACTCGGAGGTACAGAACACTGGGCCAGGTGCACCTATCAC 1581
Query 1560 AAAACGGGTTACTTGGCCAGGAATCAAGAAGTTGAGTGATGAAGAAATCCTTAAATTCAC 1619
|||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||
Sbjct 1582 AAAACGGGTTACTTGGCCTGGAATCAAGAAGTTGAGTGAAGAAGAAATACTTACATTCAC 1641
Query 1620 TCCAGCTCAATACATCCAAGGTGACGCTTGGATTCCTGGTAAAGGTGTTCCGTACATCCT 1679
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1642 TCCAGCTCAATACATCCAAGGTGATGCTTGGATTCCGGGTAAAGGTGTTCCGTATATCCC 1701
Query 1680 AGGTCTTTTTAGTGGAAACGGTTCCACAA 1708
||||||||| | |||||| || || ||||
Sbjct 1702 AGGTCTTTTCACTGGAAATGGCTCAACAA 1730
Score = 178 bits (96), Expect = 2e-43
Identities = 129/145 (89%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 1895 CACCATCAATGGTAGTGTCTCCTTCAACTTCTCCACCAGCTGGTCATCTTGGTTCCCCAT 1954
|||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1812 CACCTTCGACGGTAGTGTCTCCTTCAACTTCTCCACCAGCTGGCCATCTTGGTTCCCCAC 1871
Query 1955 CAGATACACCTTCATCGTTAGTTTCTCCTTCAACTTCTCCACCAGCTGGTCATCTTGGTT 2014
||| |||||||||| || |||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 1872 CAGCTACACCTTCAACGATAGTGTCTCCTTCAACATCTCCACCAGCTGACCATCTTGGTT 1931
Query 2015 CTCCATCAGA-TACACCTTCATCGG 2038
| ||| || | ||||||||||||||
Sbjct 1932 CCCCACCA-ACTACACCTTCATCGG 1955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82770102385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5